Items where Year is 2011

A

Adams, B., Golding, S., Biddlestone-Thorpe, L., Beckta, J., Saleh, H., Enikopolov, G., Valerie, K. (2011) In Vivo and In Vitro Human Brain Tumor Models for Improving the Therapeutic Ratio of Ionizing Radiation and DNA Repair Inhibitors. International Journal of Radiation Oncology Biology Physics, 81 (S2). S741-S742. ISSN 0360-3016

Adusumilli, Prasad S, Gholami, Sepideh, Chun, Yun Shin, Mullerad, Michael, Chan, Mei Ki, Yu, Zhenkun, Ben-Porat, Leah, Rusch, Valerie W, Fong, Yuman (2011) Fluorescence-assisted cytological testing (FACT): Ex Vivo viral method for enhancing detection of rare cancer cells in body fluids. Molecular Medicine, 17 (7-8). pp. 628-634. ISSN 1076-1551

Akst, J. (August 2011) Chromosomes and Cancer. The Scientist.

Al-Balool, H. H., Weber, D., Liu, Y., Wade, M., Guleria, K., Nam, P. L. P., Clayton, J., Rowe, W., Coxhead, J., Irving, J., Elliott, D. J., Hall, A. G., Santibanez-Koref, M., Jackson, M. S. (November 2011) Post-transcriptional exon shuffling events in humans can be evolutionarily conserved and abundant. Genome Research, 21 (11). pp. 1788-1799. ISSN 10889051 (ISSN)

Al-Jaber, Nabilah A, Awaad, Amani S, Moses, John E (October 2011) Review on some antioxidant plants growing in Arab world. Journal of Saudi Chemical Society, 15 (4). pp. 293-307. ISSN 1319-6103

Albers, C., Illert, A. L., Miething, C., Leischner, H., Thiede, M., Peschel, C., Duyster, J. (August 2011) An RNAi-based system for loss-of-function analysis identifies Raf1 as a crucial mediator of BCR-ABL - Driven leukemogenesis. Blood, 118 (8). pp. 2200-2210. ISSN 00064971 (ISSN)

Albert, F. W., Hodges, E., Jensen, J. D., Besnier, F., Xuan, Z. Y., Rooks, M., Bhattacharjee, A., Brizuela, L., Good, J. M., Green, R. E., Burbano, H. A., Plyusnina, I. Z., Trut, L., Andersson, L., Schoneberg, T., Carlborg, O., Hannon, G. J., Paabo, S. (September 2011) Targeted resequencing of a genomic region influencing tameness and aggression reveals multiple signals of positive selection. Heredity, 107 (3). pp. 205-214. ISSN 0018-067X

Amador-Arjona, A., Elliott, J., Miller, A., Ginbey, A., Pazour, G. J., Enikolopov, G. N., Roberts, A. J., Terskikh, A. V. (July 2011) Primary cilia regulate proliferation of amplifying progenitors in adult hippocampus: implications for learning and memory. J Neurosci, 31 (27). pp. 9933-44. ISSN 1529-2401 (Electronic) 0270-6474 (Linking)

Argout, X., Salse, J., Aury, J. M., Guiltinan, M. J., Droc, G., Gouzy, J., Allegre, M., Chaparro, C., Legavre, T., Maximova, S. N., Abrouk, M., Murat, F., Fouet, O., Poulain, J., Ruiz, M., Roguet, Y., Rodier-Goud, M., Barbosa-Neto, J. F., Sabot, F., Kudrna, D., Ammiraju, J. S. S., Schuster, S. C., Carlson, J. E., Sallet, E., Schiex, T., Dievart, A., Kramer, M. R., Gelley, L., Shi, Z., Bérard, A., Viot, C., Boccara, M., Risterucci, A. M., Guignon, V., Sabau, X., Axtell, M. J., Ma, Z., Zhang, Y, Brown, S., Bourge, M., Golser, W., Song, X., Clement, D., Rivallan, R., Tahi, M., Akaza, J. M., Pitollat, B., Gramacho, K., D'Hont, A., Brunel, D., Infante, D., Kebe, I., Costet, P., Wing, R., McCombie, W. R., Guiderdoni, E., Quetier, F., Panaud, O., Wincker, P., Bocs, S., Lanaud, C. (2011) The genome of Theobroma cacao. Nature Genetics, 43 (2). pp. 101-108. ISSN 10614036

B

Balagula, Y., Pulitzer, M. P., Maki, R. G., Myskowski, P. L. (September 2011) Pigmentary changes in a patient treated with imatinib. J Drugs Dermatol, 10 (9). pp. 1062-6. ISSN 1545-9616 (Print)1545-9616 (Linking)

Banks, J. A., Nishiyama, T., Hasebe, M., Bowman, J. L., Gribskov, M., Depamphilis, C., Albert, V. A., Aono, N., Aoyama, T., Ambrose, B. A., Ashton, N. W., Axtell, M. J., Barker, E., Barker, M. S., Bennetzen, J. L., Bonawitz, N. D., Chapple, C., Cheng, C., Correa, L. G. G., Dacre, M., Debarry, J., Dreyer, I., Elias, M., Engstrom, E. M., Estelle, M., Feng, L., Finet, C., Floyd, S. K., Frommer, W. B., Fujita, T., Gramzow, L., Gutensohn, M., Harholt, J., Hattori, M., Heyl, A., Hirai, T., Hiwatashi, Y., Ishikawa, M., Iwata, M., Karol, K. G., Koehler, B., Kolukisaoglu, U., Kubo, M., Kurata, T., Lalonde, S., Li, K., Li, Y., Litt, A., Lyons, E., Manning, G., Maruyama, T., Michael, T. P., Mikami, K., Miyazaki, S., Morinaga, S., Murata, T., Mueller-roeber, B., Nelson, D. R., Obara, M., Oguri, Y., Olmstead, R. G., Onodera, N., Petersen, B. L., Pils, B., Prigge, M., Rensing, S. A., Riaño-Pachón, D. M., Roberts, A. W., Sato, Y., Scheller, H. V., Schulz, B., Schulz, C., Shakirov, E. V., Shibagaki, N., Shinohara, N., Shippen, D. E., Sørensen, I., Sotooka, R., Sugimoto, N., Sugita, M., Sumikawa, N., Tanurdzic, M., Theiben, G., Ulvskov, P., Wakazuki, S., Weng, J., Willats, W. W. G. T., Wipf, D., Wolf, P. G., Yang, L., Zimmer, A. D., Zhu, Q., Mitros, T., Hellsten, U., Loqué, D., Otillar, R., Salamov, A., Schmutz, J., Shapiro, H., Lindquist, E. (May 2011) The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants. Science, 332 (6032). pp. 963-966. ISSN 00368075

Baumann, U., Targosz, B. S., Lemeer, S., Nikolova, V., Kratzat, S., Fernandez-Saiz, V., Reiter, C., Rudelius, M., Miething, C., Kuster, B., Peschel, C., Keller, U., Bassermann, F. (September 2011) SCF(Fbxo25) suppresses B cell lymphomagenesis by targeting Hax-1 for ubiquitin mediated proteasomal degradation. Onkologie, 34. p. 190. ISSN 0378-584X

Bell, S., Li, J., Walter, J. (September 2011) EUKARYOTIC DNA REPLICATION & GENOME MAINTENANCE. In: 2011 meeting on EUKARYOTIC DNA REPLICATION & GENOME MAINTENANCE, September 6–September 10, 2011.

Benitez-Alfonso, Y., Jackson, D. P., Maule, A. (2011) Redox regulation of intercellular transport. Protoplasma, 248 (1). pp. 131-140.

Berezikov, E., Robine, N., Samsonova, A., Westholm, J. O., Naqvi, A., Hung, J. H., Okamura, K., Dai, Q., Bortolamiol-Becet, D., Martin, R., Zhao, Y. J., Zamore, P. D., Hannon, G. J., Marra, M. A., Weng, Z. P., Perrimon, N., Lai, E. C. (February 2011) Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence. Genome Research, 21 (2). pp. 203-215. ISSN 1088-9051

Bergmann, J. H., Rodriguez, M. G., Martins, N. M. C., Kimura, H., Kelly, D. A., Masumoto, H., Larionov, V., Jansen, L. E. T., Earnshaw, W. C. (December 2011) Epigenetic engineering shows H3K4me2 is required for HJURP targeting and CENP-A assembly on a synthetic human kinetochore. EMBO Journal, 30 (2). pp. 328-340.

Bernard Chera, T.H. , Sing Chana, H. , Kleinb, G. F. , Jabkowskib, J. , Schadenböck-Kranzlc, G. , Zachd, O. , Roca, X., Alex Law, S.K. (January 2011) A novel 3′ splice-site mutation and a novel gross deletion in leukocyte adhesion deficiency (LAD)-1star, open. Biochemical and Biophysical Research Communications, 404 (4). pp. 1099-1104. ISSN 0006-291X

Birbrair, A., Wang, Z. M., Messi, M. L., Enikolopov, G. N. , Delbono, O. (February 2011) Nestin-GFP transgene reveals neural precursor cells in adult skeletal muscle. PLoS ONE, 6 (2). ISSN 19326203 (ISSN)

Bivona, T. G., Hieronymus, H., Parker, J., Chang, K., Taron, M., Rosell, R., Moonsamy, P., Dahlman, K., Miller, V. A., Costa, C., Hannon, G. J., Sawyers, C. L. (March 2011) FAS and NF-kappa B signalling modulate dependence of lung cancers on mutant EGFR. Nature, 471 (7339). pp. 523-526. ISSN 0028-0836

Bogdanove, A. J., Koebnik, R., Lu, H., Furutani, A., Angiuoli, S. V., Patil, P. B., Van Sluys, M. A., Ryan, R. P., Meyer, D. F., Han, S. W., Aparna, G., Rajaram, M., Delcher, A. L., Phillippy, A. M., Puiu, D., Schatz, M. C., Shumway, M., Sommer, D. D., Trapnell, C., Benahmed, F., Dimitrov, G., Madupu, R., Radune, D., Sullivan, S., Jha, G., Ishihara, H., Lee, S. W., Pandey, A., Sharma, V., Sriariyanun, M., Szurek, B., Vera-Cruz, C. M., Dorman, K. S., Ronald, P. C., Verdier, V., Dow, J. M., Sonti, R. V., Tsuge, S., Brendel, V. P., Rabinowicz, P. D., Leach, J. E., White, F. F., Salzberg, S. L. (2011) Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. Journal of Bacteriology, 193 (19). pp. 5450-5464. ISSN 00219193 (ISSN)

Borges, F., Pereira, P. A., Slotkin, R. K., Martienssen, R. A., Becker, J. D. (March 2011) MicroRNA activity in the Arabidopsis male germline. Journal of Experimental Botany, 62 (5). pp. 1611-1620. ISSN 0022-0957

Botcheva, K., McCorkle, S. R., McCombie, W. R., Dunn, J. J., Anderson, C. W. (December 2011) Distinct p53 genomic binding patterns in normal and cancer-derived human cells. Cell Cycle, 10 (24). pp. 4237-4249. ISSN 1538-4101

Brady, S. M., Zhang, L., Megraw, M., Martinez, N. J., Jiang, E., Yi, C. S., Liu, W., Zeng, A., Taylor-Teeples, M., Kim, D., Ahnert, S., Ohler, U., Ware, D. H., Walhout, A. J. M., Benfey, P. N. (January 2011) A stele-enriched gene regulatory network in the Arabidopsis root. Molecular Systems Biology, 7. p. 459.

Brennand, K. J., Simone, A., Jou, J., Gelboin-Burkhart, C., Tran, N., Sangar, S., Li, Y., Mu, Y., Chen, G., Yu, D., McCarthy, S. E., Sebat, J., Gage, F. H. (May 2011) Modelling schizophrenia using human induced pluripotent stem cells. Nature, 473 (7346). 221 - 225. ISSN 00280836 (ISSN)

Brumby, A. M., Goulding, K. R., Schlosser, T., Loi, S., Galea, R., Khoo, P., Bolden, J. E., Aigaki, T., Humbert, P. O., Richardson, H. E. (May 2011) Identification of novel Ras-cooperating oncogenes in Drosophila melanogaster: A RhoGEF/Rho-family/JNK pathway is a central driver of tumorigenesis. Genetics, 188 (1). pp. 105-125. ISSN 00166731 (ISSN)

Burnley, J., Ralph, M., Sharma, P., Moses, J. E. (2011) Biomimetic Electrocyclization Reactions toward Polyketide-Derived Natural Products. In: Biomimetic Organic Synthesis. John Wiley & Sons, pp. 591-635. ISBN 9783527634606

Bush, K., Courvalin, P., Dantas, G., Davies, J., Eisenstein, B., Huovinen, P., Jacoby, G. A., Kishony, R., Kreiswirth, B. N., Kutter, E., Lerner, S. A., Levy, S., Lewis, K., Lomovskaya, O., Miller, J. H., Mobashery, S., Piddock, L. J. V., Projan, S., Thomas, C. M., Tomasz, A., Tulkens, P. M., Walsh, T. R., Watson, J. D., Witkowski, J., Witte, W., Wright, G., Yeh, P., Zgurskaya, H. I. (December 2011) Tackling antibiotic resistance. Nature Reviews Microbiology, 9 (12). pp. 894-896. ISSN 17401526 (ISSN)

C

Cabal, R., Khanin, R., Viali, A., Socci, N., Lucito, R., Olshen, A., Zhang, J., Gerald, W., Powers, S., Ladanyi, M. (February 2011) Testing and Validating High Throughput Genomic Analysis of FFPE Samples: Systematic Gene Expression Differences between Matched Frozen and FFPE Samples Due to Rapid mRNA Degradation Signals. Modern Pathology, 24. p. 1875. ISSN 0893-3952

Calarco, J. P., Martienssen, R. A. (February 2011) Genome reprogramming and small interfering RNA in the Arabidopsis germline. Curr Opin Genet Dev, 21 (2). pp. 134-9. ISSN 1879-0380 (Electronic) 0959-437X (Linking)

Chan, C. S., Glajch, K. E., Gertler, T. S., Guzman, J. N., Mercer, J. N., Lewis, A. S., Goldberg, A. B., Tkatch, T., Shigemoto, R., Fleming, S. M., Chetkovich, D. M., Osten, P., Kita, H., Surmeier, D. J. (January 2011) HCN channelopathy in external globus pallidus neurons in models of Parkinson's disease. Nature Neuroscience, 14 (1). 85-U117. ISSN 1097-6256

Chen, M. H., Pratt, C. P., Zeeman, M. E., Schultz, N., Taylor, B. S., O'Neill, A., Castillo-Martin, M., Nowak, D. G., Naguib, A., Grace, D. M., Murn, J., Navin, N., Atwal, G. S., Sander, C., Gerald, W. L., Cordon-Cardo, C., Newton, A. C., Carver, B. S., Trotman, L. C. (August 2011) Identification of PHLPP1 as a Tumor Suppressor Reveals the Role of Feedback Activation in PTEN-Mutant Prostate Cancer Progression. Cancer Cell, 20 (2). pp. 173-186. ISSN 1535-6108

Cheng, J., Zhu, Y., He, S., Lu, Y., Chen, J., Han, B., Petrillo, M., Wrzeszczynski, K. O., Yang, S., Dai, P., Zhai, S., Han, D., Zhang, M. Q., Li, W., Liu, X., Li, H., Chen, Z. Y., Yuan, H. (July 2011) Functional Mutation of SMAC/DIABLO, Encoding a Mitochondrial Proapoptotic Protein, Causes Human Progressive Hearing Loss DFNA64. The American Journal of Human Genetics, 89 (1). pp. 56-66. ISSN 0002-9297

Cherbas, L., Willingham, A., Zhang, D., Yang, L., Zou, Y., Eads, B. D., Carlson, J. W., Landolin, J. M., Kapranov, P., Dumais, J., Samsonova, A., Choi, J. H., Roberts, J., Davis, C. A., Tang, H., Van Baren, M. J., Ghosh, S., Dobin, A., Bell, K. G., Lin, W., Langton, L., Duff, M. O., Tenney, A. E., Zaleski, C., Brent, M. R., Hoskins, R. A., Kaufman, T. C., Andrews, J., Graveley, B. R., Perrimon, N., Celniker, S. E., Gingeras, T. R., Cherbas, P. (2011) The transcriptional diversity of 25 Drosophila cell lines. Genome Research, 21 (2). pp. 301-314. ISSN 10889051 (ISSN) (Public Dataset)

Chia, J. M., Ware, D. H. (February 2011) Sequencing for the cream of the crop. Nature Biotechnology, 29 (2). pp. 138-9. ISSN 1546-1696 (Electronic) 1087-0156 (Linking)

Chien, Y., Scuoppo, C., Wang, X., Fang, X., Balgley, B., Bolden, J. E., Premsrirut, P., Luo, W., Chicas, A., Lee, C. S., Kogan, S. C., Lowe, S. W. (October 2011) Control of the senescence-associated secretory phenotype by NF-kappaB promotes senescence and enhances chemosensitivity. Genes Dev, 25 (20). pp. 2125-36. ISSN 1549-5477 (Electronic) 0890-9369 (Linking)

Cho, S. Y., Hoang, A., Sinha, R., Zhong, X. Y., Fu, X. D., Krainer, A. R., Ghosh, G. (May 2011) Interaction between the RNA binding domains of Ser-Arg splicing factor 1 and U1-70K snRNP protein determines early spliceosome assembly. Proceedings of the National Academy of Sciences of the United States of America, 108 (20). pp. 8233-8238. ISSN 0027-8424

Choi, Y. J., Lin, C. P., Ho, J. J., He, X., Okada, N., Bu, P., Zhong, Y., Kim, S. Y., Bennett, M. J., Chen, C., Ozturk, A., Hicks, G. G., Hannon, G. J., He, L. (2011) MiR-34 miRNAs provide a barrier for somatic cell reprogramming. Nature Cell Biology, 13 (11). pp. 1353-1360. ISSN 14657392 (ISSN)

Churchland, A. K. (May 2011) Normalizing relations between the senses. Nature Neuroscience, 14 (6). pp. 672-3. ISSN 1097-6256

Churchland, A. K. (November 2011) Talk from Anne Churchland at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Churchland, A. K., Kiani, R., Chaudhuri, R., Wang, X. J., Pouget, A., Shadlen, M. N. (February 2011) Variance as a Signature of Neural Computations during Decision Making. Neuron, 69 (4). pp. 818-831.

Cifani, Paolo, Bendz, Maria, Wårell, Kristofer, Hansson, Karin, Levander, Fredrik, Sandin, Marianne, Krogh, Morten, Ovenberger, Marie, Fredlund, Erik, Vaapil, Marica, Pietras, Alexander, Påhlman, Sven, James, Peter (April 2011) Hunting for Protein Markers of Hypoxia by Combining Plasma Membrane Enrichment with a New Approach to Membrane Protein Analysis. Journal of Proteome Research, 10 (4). pp. 1645-1656. ISSN 1535-3893

Clark, M. B., Amaral, P. P., Schlesinger, F. J., Dinger, M. E., Taft, R. J., Rinn, J. L., Ponting, C. P., Stadler, P. F., Morris, K. V., Morillon, A., Rozowsky, J. S., Gerstein, M. B., Wahlestedt, C., Hayashizaki, Y., Carninci, P., Gingeras, T. R., Mattick, J. S. (July 2011) The reality of pervasive transcription. Plos Biology, 9 (7). ISSN 15449173 (Public Dataset)

Comte, I., Kim, Y., Young, C. C., van der Harg, J. M., Hockberger, P., Bolam, P. J., Poirier, F., Szele, F. G. (March 2011) Galectin-3 maintains cell motility from the subventricular zone to the olfactory bulb. Journal of Cell Science, 124 (14). pp. 2438-2447. ISSN 00219533 (ISSN)

Consortium, Arabidopsis Interactome Mapping (July 2011) Evidence for Network Evolution in an Arabidopsis Interactome Map. Science, 333 (6042). pp. 601-607.

Creasey, K. M., Martienssen, R. A. (2011) Germline Reprogramming of Heterochromatin in Plants. Cold Spring Harbor Symposia on Quantitative Biology, 75. pp. 269-274. ISSN 00917451 (ISSN)

Croft, D., O'Kelly, G., Wu, G., Haw, R., Gillespie, M., Matthews, L., Caudy, M., Garapati, P., Gopinath, G., Jassal, B., Jupe, S., Kalatskaya, I., MayMahajan, S., May, B., Ndegwa, N., Schmidt, E., Shamovsky, V., Yung, C., Birney, E., Hermjakob, H., D'Eustachio, P., Stein, L. D. (January 2011) Reactome: A database of reactions, pathways and biological processes. Nucleic Acids Research, 39 (SUPPL.).

Croft, D., O'Kelly, G., Wu, G., Haw, R., Gillespie, M., Matthews, L., Caudy, M., Garapati, P., Gopinath, G., Jassal, B., Jupe, S., Kataskaya, I., Mahajan, S., May, B., Ndegwa, N., Schmidt, E., Shamovsky, V., Yung, C., Birney, E., Hermjakob, H., D'Eustachio, P., Stein, L. D. (January 2011) Reactome: a database of reactions, pathways and biological processes. Nucleic Acids Res, 39 (Suppl ). D691-7. ISSN 1362-4962 (Electronic) 0305-1048 (Linking)

Czech, B., Hannon, G. J. (January 2011) Small RNA sorting: matchmaking for Argonautes. Nat Rev Genet, 12 (1). pp. 19-31. ISSN 1471-0064 (Electronic) 1471-0056 (Linking)

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Daher, M., Lacouture, M. E., Rathkopf, D., Maki, R. G., Keohan, M. L., Gansukh, B., Chen, H., Abou-Alfa, G. K. (July 2011) Case series of dermatologic events associated with the insulin-like growth factor receptor 1 inhibitor cixutumumab. J Clin Oncol, 29 (21). e638-40. ISSN 1527-7755 (Electronic)0732-183X (Linking)

Darnell, J. C., Van Driesche, S. J., Zhang, C., Hung, K. Y. S., Mele, A., Fraser, C. E., Stone, E. F., Chen, C., Fak, J. J., Chi, S. W., Licatalosi, D. D., Richter, J. D., Darnell, R. B. (July 2011) FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism. Cell, 146 (2). pp. 247-261. ISSN 00928674 (ISSN)

DeNicola, G. M., Karreth, F. A., Humpton, T. J., Gopinathan, A., Wei, C., Frese, K., Mangal, D., Yu, K. H., Yeo, C. J., Calhoun, E. S., Scrimieri, F., Winter, J. M., Hruban, R. H., Iacobuzio-Donahue, C., Kern, S. E., Blair, I. A., Tuveson, D. A. (July 2011) Oncogene-induced Nrf2 transcription promotes ROS detoxification and tumorigenesis. Nature, 475 (7354). pp. 106-9. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Delmore, J. E., Issa, G. C., Lemieux, M. E., Rahl, P. B., Shi, J. W., Jacobs, H. M., Kastritis, E., Gilpatrick, T., Paranal, R. M., Qi, J., Chesi, M., Schinzel, A. C., McKeown, M. R., Heffernan, T. P., Vakoc, C. R., Bergsagel, P.  , Ghobrial, I. M., Richardson, P. G., Young, R. A., Hahn, W. C., Anderson, K. C., Kung, A. L., Bradner, J. E., Mitsiades, C. S. (September 2011) BET Bromodomain Inhibition as a Therapeutic Strategy to Target c-Myc. Cell, 146 (6). pp. 904-917. ISSN 00928674 (ISSN)

Deng, X., Hiatt, J. B., Nguyen, D. K., Ercan, S., Sturgill, D., Hillier, L. W., Schlesinger, F., Davis, C. A., Reinke, V. J., Gingeras, T. R., Shendure, J., Waterston, R. H., Oliver, B., Lieb, J. D., Disteche, C. M. (2011) Balance of the x restored: evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster. Nature Genetics, 43 (12). pp. 1179-85. ISSN 10614036 (ISSN)

Depge-Fargeix, N., Javelle, M., Chambrier, P., Frangne, N., Gerentes, D., Perez, P., Rogowsky, P. M., Vernoud, V. (2011) Functional characterization of the HD-ZIP IV transcription factor OCL1 from maize. Journal of Experimental Botany, 62 (1). pp. 293-305.

Ding, Z. H., Wu, C. J., Chu, G. C., Xiao, Y. H., Ho, D., Zhang, J. F., Perry, S. R., Labrot, E. S., Wu, X. Q., Lis, R., Hoshida, Y., Hiller, D., Hu, B. L., Jiang, S., Zheng, H. W., Stegh, A. H., Scott, K. L., Signoretti, S., Bardeesy, N., Wang, Y. A., Hill, D. E., Golub, T. R., Stampfer, M. J., Wong, W. H., Loda, M., Mucci, L., Chin, L., DePinho, R. A. (February 2011) SMAD4-dependent barrier constrains prostate cancer growth and metastatic progression. Nature, 470 (7333). pp. 269-73. ISSN 0028-0836

Donia, M. S., Fricke, W. F., Partensky, F., Cox, J., Elshahawi, S. I., White, J. R., Phillippy, A. M., Schatz, M. C., Piel, J., Haygood, M. G., Ravel, J., Schmidt, E. W. (2011) Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis. Proceedings of the National Academy of Sciences of the United States of America, 108 (51). E1423-E1432. ISSN 00278424 (ISSN)

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Earl, D., Bradnam, K., St. John, J., Darling, A., Lin, D., Fass, J., Yu, H. O. K., Buffalo, V., Zerbino, D. R., Diekhans, M., Nguyen, N., Ariyaratne, P. N., Sung, W. K., Ning, Z., Haimel, M., Simpson, J. T., Fonseca, N. A., Birol, I., Docking, T. R., Ho, I. Y., Rokhsar, D. S., Chikhi, R., Lavenier, D., Chapuis, G., Naquin, D., Maillet, N., Schatz, M. C., Kelley, D. R., Phillippy, A. M., Koren, S., Yang, S. P., Wu, W., Chou, W. C., Srivastava, A., Shaw, T. I., Ruby, J. G., Skewes-Cox, P., Betegon, M., Dimon, M. T., Solovyev, V., Seledtsov, I., Kosarev, P., Vorobyev, D., Ramirez-Gonzalez, R., Leggett, R., MacLean, D., Xia, F., Luo, R., Li, Z., Xie, Y., Liu, B., Gnerre, S., MacCallum, I., Przybylski, D., Ribeiro, F. J., Sharpe, T., Hall, G., Kersey, P. J., Durbin, R., Jackman, S. D., Chapman, J. A., Huang, X., DeRisi, J. L., Caccamo, M., Li, Y., Jaffe, D. B., Green, R. E., Haussler, D., Korf, I., Paten, B. (2011) Assemblathon 1: A competitive assessment of de novo short read assembly methods. Genome Research, 21 (12). pp. 2224-2241. ISSN 10889051 (ISSN)

Egeblad, M. (November 2011) Talk from Mikala Egeblad at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Encinas, J. M., Hamani, C., Lozano, A. M., Enikolopov, G. N. (January 2011) Neurogenic hippocampal targets of deep brain stimulation. Journal of Comparative Neurology, 519 (1). pp. 6-20. ISSN 1096-9861 (Electronic) 0021-9967 (Linking)

Encinas, J. M., Michurina, T. V., Peunova, N., Park, J.H., Tordo, J., Peterson, D. A., Fishell, G., Koulakov, A. A., Enikolopov, G. N. (May 2011) Division-Coupled Astrocytic Differentiation and Age-Related Depletion of Neural Stem Cells in the Adult Hippocampus. Cell Stem Cell, 8 (5). pp. 566-579. ISSN 1934-5909

Engel, T. A., Wang, X. J. (May 2011) Same or different? A neural circuit mechanism of similarity-based pattern match decision making. J Neurosci, 31 (19). pp. 6982-96. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Enikolopov, G. N. (November 2011) Talk from Grigori Enikolopov at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Erlich, Y., Edvardson, S., Hodges, E., Zenvirt, S., Thekkat, P., Shaag, A., Dor, T., Hannon, G. J., Elpeleg, O. (May 2011) Exome sequencing and disease-network analysis of a single family implicate a mutation in KIF1A in hereditary spastic paraparesis. Genome Research, 21 (5). pp. 658-664. ISSN 1088-9051

Errani, C., Zhang, L., Sung, Y. S., Hajdu, M., Singer, S., Maki, R. G., Healey, J. H., Antonescu, C. R. (August 2011) A novel WWTR1-CAMTA1 gene fusion is a consistent abnormality in epithelioid hemangioendothelioma of different anatomic sites. Genes Chromosomes Cancer, 50 (8). pp. 644-53. ISSN 1098-2264 (Electronic)1045-2257 (Linking)

Ewald, A. J., Werb, Z., Egeblad, M. (February 2011) Dynamic, Long-Term In Vivo Imaging of Tumor–Stroma Interactions in Mouse Models of Breast Cancer Using Spinning-Disk Confocal Microscopy. Cold Spring Harbor Protocols, 2011 (2).

Ewald, A. J., Werb, Z., Egeblad, M. (February 2011) Monitoring of vital signs for long-term survival of mice under anesthesia. Cold Spring Harbor Protocols, 2011 (2). ISSN 1559-6095

Ewald, A. J., Werb, Z., Egeblad, M. (February 2011) Preparation of mice for long-term intravital imaging of the mammary gland. Cold Spring Harbor Protocols, 2011 (2). ISSN 1559-6095

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Fellmann, C., Zuber, J., McJunkin, K., Chang, K. , Malone, C. D., Dickins, R. A., Xu, Q., Hengartner, M. O., Elledge, S. J., Hannon, G. J., Lowe, S. W. (March 2011) Functional Identification of Optimized RNAi Triggers Using a Massively Parallel Sensor Assay. Molecular Cell, 41 (6). pp. 733-746. ISSN 1097-2765

Feng, W., Jacob, Y., Veley, K. M., Ding, L., Yu, X., Choe, G., Michaels, S. D. (2011) Hypomorphic alleles reveal FCA-independent roles for FY in the regulation of FLOWERING LOCUS C. Plant Physiology, 155 (3). pp. 1425-1434. ISSN 00320889 (ISSN)

Feng, X., Grossman, R., Stein, L. D. (May 2011) PeakRanger: A cloud-enabled peak caller for ChIP-seq data. Bmc Bioinformatics, 12. p. 139. ISSN 1471-2105

Fesen, R. A., Zastrow, J. A., Hammell, M. C., Shull, J. M., Silvia, D. W. (August 2011) Ejecta Knot Flickering, Mass Ablation, and Fragmentation in Cassiopeia A. Astrophysical Journal, 736 (2). p. 13. ISSN 0004-637X

Fields, R. C., Hameed, M., Qin, L. X., Moraco, N., Jia, X., Maki, R. G., Singer, S., Brennan, M. F. (February 2011) Dermatofibrosarcoma protuberans (DFSP): predictors of recurrence and the use of systemic therapy. Ann Surg Oncol, 18 (2). pp. 328-36. ISSN 1534-4681 (Electronic)1068-9265 (Linking)

Finigan, P. (August 2011) The origin of novel phenotypic variation in Arabidopsis allopolyploids. PhD thesis, Cold Spring Harbor Laboratory.

Forgeard, M. J. C., Haigh, E. A. P., Beck, A. T., Davidson, R. J., Henn, F. A., Maier, S. F., Mayberg, H. S., Seligman, M. E. P. (2011) Beyond depression: Toward a process-based approach to research, diagnosis, and treatment. Clinical Psychology: Science and Practice, 18 (4). pp. 275-299. ISSN 09695893 (ISSN)

Furukawa, H. (November 2011) Talk from Hiro Furukawa at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

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Gerbasi, V. R., Preall, J. B., Golden, D. E., Powell, D. W., Cummins, T. D., Sontheimer, E. J. (2011) Blanks, a nuclear siRNA/dsRNA-binding complex component, is required for Drosophila spermiogenesis. Proceedings of the National Academy of Sciences of the United States of America, 108 (8). pp. 3204-3209. ISSN 00278424 (ISSN)

Gholami, Sepideh, Haddad, Dana, Chen, Chun-Hao, Chen, Nanhai G, Zhang, Qian, Zanzonico, Pat B, Szalay, Aladar A, Fong, Yuman (December 2011) Novel therapy for anaplastic thyroid carcinoma cells using an oncolytic vaccinia virus carrying the human sodium iodide symporter. Surgery, 150 (6). pp. 1040-1047. ISSN 0039-6060

Gillis, J., Pavlidis, P. (2011) Figure data from "The role of indirect connections in gene networks in predicting function" Gillis, J. and Pavlidis, P. (2011) Bioinformatics, 27 (13). pp. 1860-1866. [Dataset]

Gillis, J., Pavlidis, P. (2011) Gene Ontology matrices from The role of indirect connections in gene networks in predicting function Gillis, J. and Pavlidis, P. (2011) Bioinformatics, 27 (13). pp. 1860-1866. [Dataset]

Gillis, J., Pavlidis, P. (2011) Gene lists from The role of indirect connections in gene networks in predicting function Gillis, J. and Pavlidis, P. (2011) Bioinformatics, 27 (13). pp. 1860-1866. [Dataset]

Gillis, J., Pavlidis, P. (2011) Network data from The role of indirect connections in gene networks in predicting function Gillis, J. and Pavlidis, P. (2011)Bioinformatics, 27 (13). pp. 1860-1866. [Dataset]

Gillis, J., Pavlidis, P. (2011) The impact of multifunctional genes on guilt "by association "analysis. PLoS One, 6 (2). ISSN 19326203 (ISSN)

Gillis, J., Pavlidis, P. (2011) The role of indirect connections in gene networks in predicting function. Bioinformatics, 27 (13). pp. 1860-1866. ISSN 13674803 (ISSN)

Gilman, S. R, Iossifov, I., Levy, D., Ronemus, M., Wigler, M. H., Vitkup, D. (June 2011) Rare De Novo Variants Associated with Autism Implicate a Large Functional Network of Genes Involved in Formation and Function of Synapses. Neuron, 70 (5). pp. 898-907. ISSN 0896-6273

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Gottipati, S., Arbiza, L., Siepel, A., Clark, A. G., Keinan, A. (August 2011) Analyses of X-linked and autosomal genetic variation in population-scale whole genome sequencing. Nat Genet, 43 (8). pp. 741-3. ISSN 1061-4036

Gounder, M. M., Lefkowitz, R. A., Keohan, M. L., D'Adamo, D. R., Hameed, M., Antonescu, C. R., Singer, S., Stout, K., Ahn, L., Maki, R. G. (June 2011) Activity of Sorafenib against desmoid tumor/deep fibromatosis. Clin Cancer Res, 17 (12). pp. 4082-90. ISSN 1078-0432 (Print)1078-0432 (Linking)

Govek, E. E., Hatten, M. E., Van Aelst, L. (June 2011) The role of Rho GTPase proteins in CNS neuronal migration. Developmental Neurobiology, 71 (6). pp. 528-553. ISSN 19328451 (ISSN)

Grange, Pascal, Bohland, Jason, Bokil, Hemant, Nelson, Sacha, Okaty, Benjamin, Sugino, Ken, Ng, Lydia, Hawrylycz, Michael, Mitra, Partha P (November 2011) A cell-type based model explaining co-expression patterns of genes in the brain. (Submitted)

Grange, Pascal, Mitra, Partha P (April 2011) Algorithmic choice of coordinates for injections into the brain: encoding a neuroanatomical atlas on a grid. (Submitted)

Grange, Pascal, Mitra, Partha P (May 2011) Marker Genes for Anatomical Regions in the Brain: Insights from the Allen Gene Expression Atlas. (Submitted)

Grange, Pascal, Mitra, Partha P (November 2011) Statistical analysis of co-expression properties of sets of genes in the mouse brain. (Submitted)

Graveley, B. R., Brooks, A. N., Carlson, J., Duff, M. O., Landolin, J. M., Yang, L., Artieri, C. G., van Baren, M. J., Boley, N., Booth, B. W., Brown, J. B., Cherbas, L., Davis, C. A., Dobin, A., Li, R. H., Lin, W., Malone, J. H., Mattiuzzo, N. R., Miller, D., Sturgill, D., Tuch, B. B., Zaleski, C., Zhang, D. Y., Blanchette, M., Dudoit, S., Eads, B., Green, R. E., Hammonds, A., Jiang, L. C., Kapranov, P., Langton, L., Perrimon, N., Sandler, J. E., Wan, K. H., Willingham, A., Zhang, Y., Zou, Y., Andrews, J., Bickel, P. J., Brenner, S. E., Brent, M. R., Cherbas, P., Gingeras, T. R., Hoskins, R. A., Kaufman, T. C., Oliver, B., Celniker, S. E. (March 2011) The developmental transcriptome of Drosophila melanogaster. Nature, 471 (7339). pp. 473-479. ISSN 0028-0836

Grellscheid, S., Dalgliesh, C., Storbeck, M., Best, A., Liu, Y., Jakubik, M., Mende, Y., Ehrmann, I., Curk, T., Rossbach, K., Bourgeois, C. F., Stévenin, J., Grellscheid, D., Jackson, M. S., Wirth, B., Elliott, D. J. (2011) Identification of evolutionarily conserved exons as regulated targets for the splicing activator Tra2β in development. PLoS Genetics, 7 (12). ISSN 15537390 (ISSN)

Grodzicker, T., Stewart, D., Stillman, B. (2011) Metabolism and Disease. In: Cold Spring Harbor Symposia on Quantitative Biology LXXVI: Metabolism and Disease, Cold Spring Harbor.

Gronau, I., Hubisz, M. J., Gulko, B., Danko, C. G., Siepel, A. (October 2011) Bayesian inference of ancient human demography from individual genome sequences. Nat Genet, 43 (10). pp. 1031-4. ISSN 1061-4036

Guberman, J. M., Ai, J., Arnaiz, O., Baran, J., Blake, A., Baldock, R., Chelala, C., Croft, D., Cros, A., Cutts, R. J., Di Génova, A., Forbes, S., Fujisawa, T., Gadaleta, E., Goodstein, D. M., Gundem, G., Haggarty, B., Haider, S., Hall, M., Harris, T., Haw, R., Hu, S., Hubbard, S., Hsu, J., Iyer, V., Jones, P., Katayama, T., Kinsella, R., Kong, L., Lawson, D., Liang, Y., Lopez-Bigas, N., Luo, J., Lush, M., Mason, J., Moreews, F., Ndegwa, N., Oakley, D., Perez-Llamas, C., Primig, M., Rivkin, E., Rosanoff, S., Shepherd, R., Simon, R., Skarnes, B., Smedley, D., Sperling, L., Spooner, W., Stevenson, P., Stone, K., Teague, J., Wang, J., Whitty, B., Wong, D. T., Wong-Erasmus, M., Yao, L., Youens-Clark, K., Yung, C., Zhang, J., Kasprzyk, A. (2011) BioMart Central Portal: an open database network for the biological community. Database : the journal of biological databases and curation, 2011. ISSN 17580463 (ISSN)

Guo, T., Zhang, L., Chang, N. E., Singer, S., Maki, R. G., Antonescu, C. R. (January 2011) Consistent MYC and FLT4 gene amplification in radiation-induced angiosarcoma but not in other radiation-associated atypical vascular lesions. Genes Chromosomes Cancer, 50 (1). pp. 25-33. ISSN 1098-2264 (Electronic)1045-2257 (Linking)

Gutmann, D. H., Stiles, C. D., Lowe, S. W., Bollag, G. E., Furnari, F. B., Charest, A. (2011) Report from the fifth national cancer institute mouse models of human cancers consortium nervous system tumors workshop. Neuro-Oncology, 13 (7). pp. 692-699. ISSN 15228517 (ISSN)

Gymrek, M., Erlich, Y. (November 2011) Using DNA sequencers as stethoscopes. Genome Med, 3 (11). p. 73. ISSN 1756-994X (Electronic)

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Hah, N., Danko, C. G., Core, L., Waterfall, J. J., Siepel, A., Lis, J. T., Kraus, W. L. (May 2011) A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells. Cell, 145 (4). pp. 622-34. ISSN 0092-8674

Hammell, M. (November 2011) Talk from Molly Hammell at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Hangya, B., Tihanyi, B. T., Entz, L., Fabo, D., Eross, L., Wittner, L., Jakus, R., Varga, V., Freund, T. F., Ulbert, I. (June 2011) Complex Propagation Patterns Characterize Human Cortical Activity during Slow-Wave Sleep. Journal of Neuroscience, 31 (24). pp. 8770-8779. ISSN 0270-6474

Hansen, K. R., Hazan, I., Shanker, S., Watt, S., Verhein-Hansen, J., Bahler, J., Martienssen, R. A., Partridge, J. F., Cohen, A., Thon, G. (January 2011) H3K9me-Independent Gene Silencing in Fission Yeast Heterochromatin by Clr5 and Histone Deacetylases. Plos Genetics, 7 (1). ISSN 1553-7390

Haque, Aftabul, Andersen, J. N., Salmeen, A., Barford, D., Tonks, N. K. (September 2011) Conformation-Sensing Antibodies Stabilize the Oxidized Form of PTP1B and Inhibit Its Phosphatase Activity. Cell, 147 (1). pp. 185-198. ISSN 0092-8674

Harder, N., Bodnar, M., Eils, R., Spector, D. L., Rohr, K. (2011) 3D segmentation and quantification of mouse embryonic stem cells in fluorescence microscopy images. 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. pp. 216-219.

Haseltine, W. A. (July 2011) Interview: Commercial translation of cell-based therapies and regenerative medicine: learning by experience. Regen Med, 6 (4). pp. 431-5. ISSN 1746-076X (Electronic) 1746-0751 (Linking)

Hattangadi, S. M., Wong, P., Zhang, L., Flygare, J., Lodish, H. F. (December 2011) From stem cell to red cell: regulation of erythropoiesis at multiple levels by multiple proteins, RNAs, and chromatin modifications. Blood, 118 (24). pp. 6258-68. ISSN 1528-0020 (Electronic)0006-4971 (Linking)

Haw, R., Hermjakob, H., D'Eustachio, P., Stein, L. D. (September 2011) Reactome pathway analysis to enrich biological discovery in proteomics data sets. Proteomics, 11 (18). pp. 3598-3613. ISSN 16159853 (ISSN)

Haw, R. A., Croft, D., Yung, C. K., Ndegwa, N., D'Eustachio, P., Hermjakob, H., Stein, L. D. (2011) The Reactome BioMart. Database : the journal of biological databases and curation, 2011. ISSN 17580463 (ISSN)

He, Shuning, Krens, Sf Gabby, Zhan, Huiqing, Gong, Zhiyuan, Hogendoorn, Pancras Cw, Spaink, Herman P, Snaar-Jagalska, B Ewa (September 2011) A ΔRaf1-ER-inducible oncogenic zebrafish liver cell model identifies hepatocellular carcinoma signatures. Journal of Pathology, 225 (1). pp. 19-28. ISSN 0022-3417

Hein, N., Bywater, M. J., Stanley, K., Verbrugge, I., Cullinane, C., Baker, A., Zuber, H., Rappaport, A., Drygin, D., Huser, N., Bliesath, J., Ryckman, D. M., Rice, W. G., Lowe, S. W., Johnstone, R. W., Pearson, R. B., McArthur, G. A., Hannan, R. D. (November 2011) Inhibition of RNA Polymerase I Transcription by CX-5461 As a Therapeutic Strategy for the Cancer-Specific Activation of p53 in MLL-Rearranged Acute Myeloid Leukemias. Blood, 118 (21). p. 1548. ISSN 0006-4971

Henn, F. A. (December 2011) Dopamine: A Marker of Psychosis and Final Common Driver of Schizophrenia Psychosis. American Journal of Psychiatry, 168 (12). pp. 1239-1240. ISSN 0002-953X

Herrmann, H., Blatt, K., Shi, J. W., Rappaport, A. R., Gleixner, K. V., Cerny-Reiterer, S., Peter, B., Wang, E., Sperr, W. R., Bradner, J. E., Lowe, S. W., Vakoc, C. R., Zuber, J., Valent, P. (November 2011) Small-Molecule Inhibition of BRD4 Is a Novel Promising Approach to Therapeutically Target Leukemia Stem Cells in AML. Blood, 118 (21). p. 3484. ISSN 0006-4971

Hirokawa, J., Sadakane, O., Sakata, S., Bosch, M., Sakurai, Y., Yamamori, T. (September 2011) Multisensory information facilitates reaction speed by enlarging activity difference between superior colliculus hemispheres in rats. PLoS ONE, 6 (9). ISSN 1932-6203 (Electronic)

Hodges, E., Molaro, A., Dos Santos, C. O., Thekkat, P., Song, Q., Uren, P. J., Park, J. H., Butler, J., Rafii, S., McCombie, W. R., Smith, A. D., Hannon, G. J. (2011) Directional DNA Methylation Changes and Complex Intermediate States Accompany Lineage Specificity in the Adult Hematopoietic Compartment. Molecular Cell, 44 (1). pp. 17-28. ISSN 1097-2765

Hoek, M., Myers, M. P., Stillman, B. (January 2011) An analysis of CAF-1 interacting proteins reveals dynamic and direct interactions with the ku complex and 14-3-3 proteins. Journal of Biological Chemistry, 286 (12). pp. 10876-10887. ISSN 0021-9258

Honegger, K. S., Campbell, R. A. A., Turner, G. C. (August 2011) Cellular-Resolution Population Imaging Reveals Robust Sparse Coding in the Drosophila Mushroom Body. Journal of Neuroscience, 31 (33). pp. 11772-11785. ISSN 0270-6474

Horev, G., Ellegood, J., Lerch, J. P., Son, Y. E., Muthuswamy, L., Vogel, H., Krieger, A. M., Buja, A., Henkelman, R. M., Wigler, M. H., Mills, A. A. (October 2011) Dosage-dependent phenotypes in models of 16p11.2 lesions found in autism. Proceedings of the National Academy of Sciences of the United States of America, 108 (41). pp. 17076-81. ISSN 0027-8424

Horev, G., Saig, A., Knutsen, P. M., Pietr, M., Yu, C. X., Ahissar, E. (November 2011) Motor-sensory convergence in object localization: a comparative study in rats and humans. Philosophical Transactions of the Royal Society B-Biological Sciences, 366 (1581). pp. 3070-3076. ISSN 0962-8436

Hrecka, K., Hao, C., Gierszewska, M., Swanson, S. K., Kesik-Brodacka, M., Srivastava, S., Florens, L., Washburn, M. P., Skowronski, J. (2011) Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein. Nature, 474 (7353). pp. 658-61. ISSN 1476-4687 (Electronic) 0028-0836 (Linking)

Hua, Y., Sahashi, K., Rigo, F., Hung, G., Horev, G., Bennett, C. F., Krainer, A. R. (October 2011) Peripheral SMN restoration is essential for long-term rescue of a severe spinal muscular atrophy mouse model. Nature, 478 (7367). pp. 123-6. ISSN 1476-4687 (Electronic) 0028-0836 (Linking)

Hubisz, M. J., Lin, M. F., Kellis, M., Siepel, A. (2011) Error and error mitigation in low-coverage genome assemblies. PLoS One, 6 (2). e17034. ISSN 1932-6203

Hubisz, M. J., Pollard, K. S., Siepel, A. (January 2011) PHAST and RPHAST: phylogenetic analysis with space/time models. Brief Bioinform, 12 (1). pp. 41-51. ISSN 1467-5463

Hyun, S. W., Anglin, I. E., Liu, A., Yang, S., Sorkin, J. D., Lillehoj, E., Tonks, N. K., Passaniti, A., Goldblum, S. E. (2011) Diverse injurious stimuli reduce protein tyrosine phosphatase-μ expression and enhance epidermal growth factor receptor signaling in human airway epithelia. Experimental Lung Research, 37 (6). pp. 327-343. ISSN 01902148 (ISSN)

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Iossifov, I. (November 2011) Talk from Ivan Iossifov at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Issa, G. C., Delmore, J. E., McKeown, M. R., Lemieux, M. E., Rahl, P. B., Jacobs, H. M., Kastritis, E., Gilpatrick, T., Paranal, R. M., Qi, J., Shi, J. W., Chesi, M., Schinzel, A. C., Vakoc, C. R., Bergsagel, P. L., Richardson, P. G., Young, R., Hahn, W. C., Ghobrial, I. M., Anderson, K. C., Kung, A. L., Mitsiades, C. S., Bradner, J. E. (November 2011) Inhibition of c-Myc Expression and Function in Hematologic Malignancies. Blood, 118 (21). p. 1409. ISSN 0006-4971

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Jacob, Y., Martienssen, R. A. (January 2011) Chromatin reprogramming: gender equality during Arabidopsis germline differentiation. Current biology, 21 (1). R20-2. ISSN 1879-0445 (Electronic)0960-9822 (Linking)

Janas, J. A., Van Aelst, L. (May 2011) Oncogenic tyrosine kinases target Dok-1 for ubiquitin-mediated proteasomal degradation to promote cell transformation. Molecular and Cellular Biology, 31 (13). pp. 2552-2565. ISSN 0270-7306

Janowitz, T. (January 2011) Biopharmaceuticals and monoclonal antibodies in oncology trials--a cross-sectional analysis. Protein Eng Des Sel, 24 (1-2). pp. 105-11. ISSN 1741-0126

Javadzadeh, Mitra, Abbasfar, Aliazam (January 2011) The Role of Nodes Distribution in Extending the Lifetime of Wireless Sensor Networks. International Journal of Distributed Sensor Networks, 7 (1). p. 978164. ISSN 1550-1477

Javelle, M., Klein-Cosson, C., Vernoud, V., Boltz, V., Maher, C., Timmermans, M. C. P., Depege-Fargeix, N., Rogowsky, P. M. (October 2011) Genome-Wide Characterization of the HD-ZIP IV Transcription Factor Family in Maize: Preferential Expression in the Epidermis. Plant Physiology, 157 (2). pp. 790-803. ISSN 0032-0889

Javelle, M., Marco, C. F., Timmermans, M. (2011) In Situ Hybridization for the Precise Localization of Transcripts in Plants. Journal of Visualized Experiments (57). ISSN 1940-087X (Electronic)1940-087X (Linking)

Jiang, L. C., Schlesinger, F. J., Davis, C. A., Zhang, Y., Li, R. H., Salit, M., Gingeras, T. R., Oliver, B. (September 2011) Synthetic spike-in standards for RNA-seq experiments. Genome Research, 21 (9). pp. 1543-1551. ISSN 1088-9051 (Public Dataset)

Jones, R. L., Constantinidou, A., Thway, K., Ashley, S., Scurr, M., Al-Muderis, O., Fisher, C., Antonescu, C. R., D'Adamo, D. R., Keohan, M. L., Maki, R. G., Judson, I. R. (September 2011) Chemotherapy in clear cell sarcoma. Med Oncol, 28 (3). pp. 859-63. ISSN 1559-131X (Electronic)1357-0560 (Linking)

Joshua-Tor, L. (November 2011) Talk from Leemor Joshua-Tor at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Joshua-Tor, L., Hannon, G. J. (October 2011) Ancestral Roles of Small RNAs: An Ago-Centric Perspective. Cold Spring Harb Perspect Biol, 3 (10). ISSN 1943-0264 (Electronic)

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Kang, B., Pu, M., Hu, G., Wen, W., Dong, Z., Zhao, K., Stillman, B., Zhang, Z. (July 2011) Phosphorylation of H4 Ser 47 promotes HIRA-mediated nucleosome assembly. Genes and Development, 25 (13). pp. 1359-1364. ISSN 08909369 (ISSN)

Karakas, E., Simorowski, N., Furukawa, H. (July 2011) Subunit arrangement and phenylethanolamine binding in GluN1/GluN2B NMDA receptors. Nature, 475 (7355). 249- U170. ISSN 00280836 (Public Dataset)

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Karp, X., Hammell, M., Ow, M. C., Ambros, V. (April 2011) Effect of life history on microRNA expression during C. elegans development. RNA, 17 (4). pp. 639-651. ISSN 13558382 (ISSN)

Kees, T., Egeblad, M. (July 2011) Innate Immune Cells in Breast Cancer - From Villains to Heroes? Journal of Mammary Gland Biology and Neoplasia, 16 (3). pp. 189-203. ISSN 1573-7039 (Electronic)1083-3021 (Linking)

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Kepecs, A. (May 2011) Neuroscience: My brain made me do it. Nature, 473 (7347). pp. 280-281. ISSN 0028-0836

Kepecs, A. (November 2011) Talk from Adam Kepecs at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

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Kim, Il-Han, Chen, Yi-Chun M., Spector, David L., Eils, Roland, Rohr, Karl (2011) Nonrigid registration of 2-D and 3-D dynamic cell nuclei images for improved classification of subcellular particle motion. IEEE Trans Image Process., 20 (4). pp. 1011-1022. ISSN 1941-0042

Kim, Sang Yong, Wu, Priscilla, Eom, So Young, Paik, Raehum, Huang, Z Josh (October 2011) Rapid generation of genetically engineered mouse from C57BL/6 ES cell lines using tetraploid complementation. In: UNSPECIFIED.

Kinney, J. B. (November 2011) Talk from Justin Kinney at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Kopec, C. D., Bowers, A. C., Pai, S. , Brody, C. D. (March 2011) Semi-automated atlas-based analysis of brain histological sections. Journal of Neuroscience Methods, 196 (1). ISSN 0165-0270

Koulakov, A. A., Kolterman, B. E., Enikolopov, A. G., Rinberg, D. (September 2011) In search of the structure of human olfactory space. Frontiers in Systems Neuroscience, 5. p. 65. ISSN 1662-5137 (Electronic)1662-5137 (Linking)

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Krainer, A. R. (November 2011) Talk from Adrian Krainer at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Krainer, A. R., Hua, Y. M., Sahashi, K., Rigo, F., Hung, G. N., Horev, G., Bennett, C. F. (October 2011) Systemic Versus CNS Delivery Of MOE Antisense Oligonucleotide to Correct Defective Splicing in a Severe Mouse Model of Spinal Muscular Atrophy. Nucleic Acid Therapeutics, 21 (5). A57-A57. ISSN 2159-3337

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Kubota, T., Roca, X., Kimura, T., Kokunai, Y., Nishino, I., Sakoda, S., Krainer, A. R., Takahashi, M. P. (July 2011) A mutation in a rare type of intron in a sodium-channel gene results in aberrant splicing and causes myotonia. Human Mutation, 32 (7). pp. 773-782. ISSN 10597794 (ISSN)

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Lavy, Tali, Prakash, Rajesh K, He, Hongzhen, Joshua-Tor, Leemor (2011) The GAL regulon in S. CEREVISIAE: the Gal3p/Gal80p interaction. In: Acta Crystallographica.

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Lee, Yoon-ha, Ronemus, Michael, Kendall, Jude, Lakshmi, B, Leotta, Anthony, Levy, Dan, Esposito, Diane, Grubor, Vladimir, Ye, Kenny, Wigler, Michael, Yamrom, Boris (May 2011) Removing System Noise from Comparative Genomic Hybridization Data by Self-Self Analysis. (Submitted)

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Lee, P. T., Lin, H. W., Chang, Y. H., Fu, T. F., Dubnau, J. T., Hirsh, J., Lee, T., Chiang, A. S. (August 2011) Serotonin-mushroom body circuit modulating the formation of anesthesia-resistant memory in Drosophila. Proceedings of the National Academy of Sciences of the United States of America, 108 (33). pp. 13794-13799. ISSN 0027-8424

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Leung, A., Cajigas, I., Jia, P., Ezhkova, E., Brickner, J. H., Zhao, Z., Geng, F., Tansey, W. P. (August 2011) Histone H2B ubiquitylation and H3 lysine 4 methylation prevent ectopic silencing of euchromatic loci important for the cellular response to heat. Mol Biol Cell, 22 (15). pp. 2741-2753. ISSN 1939-4586 (Electronic)1059-1524 (Linking)

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Levy, Dan, Pachter, Lior (2011) The neighbor-net algorithm. Advances in Applied Mathematics, 47 (2). pp. 240-258. ISSN 0196-8858

Li, B. (March 2011) SYNAPTIC AND CIRCUITRY MECHANISMS UNDERLYING COGNITIVE ABERRATIONS IN MICE DEFICIENT IN GENES LINKED TO SCHIZOPHRENIA. Schizophrenia Bulletin, 37. p. 37. ISSN 1745-1701

Li, B., Piriz, J., Mirrione, M., Chung, C. H., Proulx, C. D., Schulz, D., Henn, F. A., Malinow, R. (February 2011) Synaptic potentiation onto habenula neurons in the learned helplessness model of depression. Nature, 470 (7335). 535-U125. ISSN 0028-0836

Li, F., Martienssen, R. A., Cande, W. Z. (July 2011) Coordination of DNA replication and histone modification by the Rik1-Dos2 complex. Nature, 475 (7355). 244-U2562. ISSN 0028-0836 (Public Dataset)

Lin, G., Aranda, V., Muthuswamy, S. K., Tonks, N. K. (July 2011) Identification of PTPN23 as a novel regulator of cell invasion in mammary epithelial cells from a loss-of-function screen of the 'PTP-ome'. Genes & Development, 25 (13). pp. 1412-1425. ISSN 0890-9369

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Lu, Y., Xue, C. (2011) The power of the purse and budgetary accountability: Experiences from subnational governments in china. Public Administration and Development, 31 (5). pp. 351-362. ISSN 02712075 (ISSN)

Lucas, C. L., Workman, C. J., Beyaz, S., LoCascio, S., Zhao, G., Vignali, D. A., Sykes, M. (May 2011) LAG-3, TGF-beta, and cell-intrinsic PD-1 inhibitory pathways contribute to CD8 but not CD4 T-cell tolerance induced by allogeneic BMT with anti-CD40L. Blood, 117 (20). pp. 5532-40. ISSN 1528-0020 (Electronic)0006-4971 (Linking)

Lucito, R. (November 2011) Talk from Rob Lucito at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Lukey, M. J., Roessler, M. M., Parkin, A., Evans, R. M., Davies, R. A., Lenz, O., Friedrich, B., Sargent, F., Armstrong, F. A. (October 2011) Oxygen-tolerant [NiFe]-hydrogenases: the individual and collective importance of supernumerary cysteines at the proximal Fe-S cluster. J Am Chem Soc, 133 (42). pp. 16881-92. ISSN 1520-5126

Luo, W. J., Friedman, M. S., Hankenson, K. D., Woolf, P. J. (May 2011) Time series gene expression profiling and temporal regulatory pathway analysis of BMP6 induced osteoblast differentiation and mineralization. BMC Systems Biology, 5 (82). ISSN 1752-0509

Lyon, Gholson J. (2011) Finding and Analyzing Human Genetic Variation in Neuropsychiatric Disorders. In: Faculty Recruitment Talk, Dec 2011, Cold Spring Harbor Laboratory. (Unpublished)

Lyon, Gholson J. (2011) Personal account of the discovery of a new disease using next-generation sequencing. Interview by Natalie Harrison. Pharmacogenomics, 12 (11). pp. 1519-1523. ISSN 1744-8042

Lyon, Gholson J. (September 2011) Returning Research Results from Next‐Generation Sequencing and Analysis to Patients with Idiopathic Disorders? In: Personal Genomes Meeting, Sept 30th - Oct 2nd 2011, Cold Spring Harbor Laboratory. (Unpublished)

Lyon, Gholson J., Abi-Dargham, Anissa, Moore, Holly, Lieberman, Jeffrey A., Javitch, Jonathan A., Sulzer, David (2011) Presynaptic regulation of dopamine transmission in schizophrenia. Schizophrenia Bulletin, 37 (1). pp. 108-117. ISSN 1745-1701

Lyon, Gholson J., Jiang, Tao, Van Wijk, Richard, Wang, Wei, Bodily, Paul Mark, Xing, Jinchuan, Tian, Lifeng, Robison, Reid J., Clement, Mark, Lin, Yang, Zhang, Peng, Liu, Ying, Moore, Barry, Glessner, Joseph T., Elia, Josephine, Reimherr, Fred, van Solinge, Wouter W., Yandell, Mark, Hakonarson, Hakon, Wang, Jun, Johnson, William Evan, Wei, Zhi, Wang, Kai (2011) Exome sequencing and unrelated findings in the context of complex disease research: ethical and clinical implications. Dscovery Medicine, 12 (62). pp. 41-55. ISSN 1944-7930

Lyon, Gholson J. (October 2011) The 2011 William Allan Award of the American Society of Human Genetics to the Right Person "J.M. Opitz"? [Teaching Resource] (Unpublished)

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Mager, E. M., Brix, K. V., Gerdes, R. M., Ryan, A. C., Grosell, M. (March 2011) Effects of water chemistry on the chronic toxicity of lead to the cladoceran, Ceriodaphnia dubia. Ecotoxicology and Environmental Safety, 74 (3). pp. 238-243. ISSN 01476513 (ISSN)

Makino, H., Malinow, R. (2011) Compartmentalized versus global synaptic plasticity on dendrites controlled by experience. Neuron, 72 (6). pp. 1001-1011. ISSN 08966273 (ISSN)

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Maniati, Eleni, Bossard, Maud, Cook, Natalie, Candido, Juliana B, Emami-Shahri, Nia, Nedospasov, Sergei A, Balkwill, Frances R, Tuveson, David A, Hagemann, Thorsten (December 2011) Crosstalk between the canonical NF-κB and Notch signaling pathways inhibits Pparγ expression and promotes pancreatic cancer progression in mice. Journal of Clinical Investigation, 121 (12). pp. 4685-4699. ISSN 0021-9738

Mao, Y. S., Sunwoo, H., Zhang, B., Spector, D. L. (2011) Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs. Nature Cell Biology, 13 (1). pp. 95-9101. ISSN 1465-7392

Mao, Y. S., Zhang, B., Spector, D. L. (2011) Biogenesis and function of nuclear bodies. Trends in Genetics, 27. pp. 295-306. ISSN 0168-9525

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Mehta, M. S., Vazquez, A., Kulkarni, D. A., Kerrigan, J. E., Atwal, G. S., Metsugi, S., Toppmeyer, D. L., Levine, A. J., Hirshfield, K. M. (February 2011) Polymorphic variants in TSC1 and TSC2 and their association with breast cancer phenotypes. Breast Cancer Research and Treatment, 125 (3). pp. 861-868.

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Menges, F., Narzisi, G., Mishra, B. (September 2011) TotalReCaller: improved accuracy and performance via integrated alignment and base-calling. Bioinformatics, 27 (17). pp. 2330-2337. ISSN 1367-4803

Menon, R. K., Bhat, G. P., Schatz, M. C. (2011) Rapid parallel genome indexing with MapReduce. MapReduce '11 Proceedings of the second international workshop on MapReduce and its applications . pp. 51-58.

Micklos, D., Lauter, S., Nisselle, A. (2011) Essays on science and society. Lessons from a science education portal. Science, 334 (6063). pp. 1657-1658. ISSN 00368075 (ISSN)

Mills, A. A. (November 2011) Talk from Alea Mills at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Mirbahai, Leda, Williams, Timothy D, Zhan, Huiqing, Gong, Zhiyuan, Chipman, J Kevin (January 2011) Comprehensive profiling of zebrafish hepatic proximal promoter CpG island methylation and its modification during chemical carcinogenesis. BMC Genomics, 12 (1). p. 3. ISSN 1471-2164

Mirrione, M. M., Li, B., Henn, F. A. (May 2011) Lateral Habenula Circuit Activity Following High Frequency Deep Brain Stimulation. Biological Psychiatry, 69 (9). 127S-128S. ISSN 0006-3223

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Mitra, P. P. (November 2011) Talk from Partha Mitra at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Molaro, A., Hodges, E., Fang, F., Song, Q., McCombie, W. R., Hannon, G. J., Smith, A. D. (September 2011) Sperm Methylation Profiles Reveal Features of Epigenetic Inheritance and Evolution in Primates. Cell, 146 (6). pp. 1029-1041. ISSN 0092-8674 (Public Dataset)

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Stillman, B. (November 2011) Talk from Bruce Stillman at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

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Zheng, H. (November 2011) Talk from Hongwu Zheng at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Zheng, S. Y., Tansey, W. P., Hiebert, S. W., Zhao, Z. M. (August 2011) Integrative network analysis identified key genes and pathways in the progression of hepatitis C virus induced hepatocellular carcinoma. BMC Medical Genomics, 4 (62). ISSN 1755-8794

Zhong, Y. (November 2011) Talk from Yi Zhong at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

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