Items where Subject is "visual cortex"

Paper

Adesnik, H., Bruns, W., Taniguchi, H., Huang, Z. J., Scanziani, M. (October 2012) A neural circuit for spatial summation in visual cortex. Nature, 490 (7419). pp. 226-231. ISSN 0028-0836

Aizenman, C. D., Akerman, C. J., Jensen, K. R., Cline, H. T. (August 2003) Visually driven regulation of intrinsic neuronal excitability improves stimulus detection in vivo. Neuron, 39 (5). pp. 831-842. ISSN 0896-6273

Bestman, J. E., Cline, H. T. (December 2008) The RNA binding protein CPEB regulates dendrite morphogenesis and neuronal circuit assembly in vivo. Proc Natl Acad Sci U S A, 105 (51). 20494-20499 .

Blot, Antonin, Roth, Morgane M, Gasler, Ioana, Javadzadeh, Mitra, Imhof, Fabia, Hofer, Sonja B (June 2021) Visual intracortical and transthalamic pathways carry distinct information to cortical areas. Neuron, 109 (12). 1996-2008.e6. ISSN 0896-6273

Burac̆as, G. T., Zador, A. M., DeWeese, M. R., Albright, T. D. (1998) Efficient Discrimination of Temporal Patterns by Motion-Sensitive Neurons in Primate Visual Cortex. Neuron, 20 (5). pp. 959-969. ISSN 0896-6273

Burbridge, Timothy J, Ratliff, Jacob M, Dwivedi, Deepanjali, Vrudhula, Uma, Alvarado-Huerta, Francisco, Sjulson, Lucas, Ibrahim, Leena Ali, Cheadle, Lucas, Fishell, Gordon, Batista-Brito, Renata (April 2024) Disruption of Cholinergic Retinal Waves Alters Visual Cortex Development and Function. bioRxiv. (Public Dataset) (Submitted)

Chattopadhyaya, B., Di Cristo, G., Higashiyama, H., Knott, G. W., Kuhlman, S. J., Welker, E., Huang, Z. J. (October 2004) Experience and activity-dependent maturation of perisomatic GABAergic innervation in primary visual cortex during a postnatal critical period. Journal of Neuroscience, 24 (43). pp. 9598-611. ISSN 0270-6474

Chattopadhyaya, B., Di Cristo, G., Wu, C. Z., Knott, G., Kuhlman, S. J., Fu, Y., Palmiter, R. D., Huang, Z. J. (June 2007) GAD67-mediated GABA synthesis and signaling regulate inhibitory synaptic innervation in the visual cortex. Neuron, 54 (6). pp. 889-903. ISSN 0896-6273 (Print)

Chklovskii, D. B. (2000) Binocular disparity can explain the orientation of ocular dominance stripes in primate primary visual area (V1). Vision Research, 40 (13). pp. 1765-1773. ISSN 0042-6989

Chklovskii, D. B., Koulakov, A. A. (2004) Maps in the brain: what can we learn from them? Annu Rev Neurosci, 27. pp. 369-92. ISSN 0147-006X (Print)

Chklovskii, D. B., Koulakov, A. A. (September 2000) A wire length minimization approach to ocular dominance patterns in mammalian visual cortex. Physica A-Statistical Mechanics and Its Applications, 284 (1-4). pp. 318-334. ISSN 0378-4371

Chklovskii, D. B., Mel, B. W., Svoboda, K. (October 2004) Cortical rewiring and information storage. Nature, 431 (7010). pp. 782-788. ISSN 0028-0836

Cline, H. T., Constantine-Paton, M. (June 1990) The differential influence of protein kinase inhibitors on retinal arbor morphology and eye-specific stripes in the frog retinotectal system. Neuron, 4 (6). pp. 899-908. ISSN 0896-6273 (Print)0896-6273 (Linking)

Constantine-Paton, M., Cline, H. T., Debski, E. (1990) Patterned activity, synaptic convergence, and the NMDA receptor in developing visual pathways. Annu Rev Neurosci, 13. pp. 129-54. ISSN 0147-006X (Print)0147-006X (Linking)

Cowley, Benjamin R, Smith, Matthew A, Kohn, Adam, Yu, Byron M (December 2016) Stimulus-Driven Population Activity Patterns in Macaque Primary Visual Cortex. PLoS Computational Biology, 12 (12). e1005185. ISSN 1553-734X

Cowley, Benjamin R, Snyder, Adam C, Acar, Katerina, Williamson, Ryan C, Yu, Byron M, Smith, Matthew A (November 2020) Slow Drift of Neural Activity as a Signature of Impulsivity in Macaque Visual and Prefrontal Cortex. Neuron, 108 (3). 551-567.e8. ISSN 0896-6273

Cowley, Benjamin R, Stan, Patricia L, Pillow, Jonathan W, Smith, Matthew A (November 2023) Compact deep neural network models of visual cortex. bioRxiv. (Submitted)

DeWeese, M. R. (June 2000) An optimal preparation for studying optimization. Neuron, 26 (3). pp. 546-548. ISSN 0896-6273

Debski, E. A., Cline, H. T., Constantine-Paton, M. (January 1990) Activity-dependent tuning and the NMDA receptor. J Neurobiol, 21 (1). pp. 18-32.

Engel, Tatiana (May 2022) Volatile neurons unite to stabilize visual experience. Nature, 605 (7911). pp. 625-626. ISSN 0028-0836

Engel, T. A., Steinmetz, N. A., Gieselmann, M. A., Thiele, A., Moore, T., Boahen, K. (December 2016) Selective modulation of cortical state during spatial attention. Science, 354 (6316). pp. 1140-1144. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Gianfranceschi, L., Siciliano, R., Walls, J., Morales, B., Kirkwood, A., Huang, Z. J., Tonegawa, S., Maffei, L. (October 2003) Visual cortex is rescued from the effects of dark rearing by overexpression of BDNF. Proceedings of the National Academy of Sciences of the United States of America, 100 (21). pp. 12486-12491. ISSN 0027-8424

Han, Y., Kebschull, J. M., Campbell, R. A. A., Cowan, D., Imhof, F., Zador, A. M., Mrsic-Flogel, T. D. (April 2018) The logic of single-cell projections from visual cortex. Nature, 556 (7699). pp. 51-56. ISSN 0028-0836

Hangya, Balázs, Kepecs, Adam (June 2015) Vision: How to Train Visual Cortex to Predict Reward Time. Current Biology, 25 (12). R490-R492. ISSN 0960-9822

Hanover, J. L., Huang, Z. J., Tonegawa, S., Stryker, M. P. (1999) Brain-derived neurotrophic factor overexpression induces precocious critical period in mouse visual cortex. Journal of Neuroscience, 19 (22). ISSN 0270-6474

He, M., Liu, Y., Wang, X., Zhang, M. Q., Hannon, G. J., Huang, Z. J. (January 2012) Cell-Type-Based Analysis of MicroRNA Profiles in the Mouse Brain. Neuron, 73 (1). pp. 35-48. ISSN 1097-4199 (Electronic)0896-6273 (Linking)

Holtmaat, A. J. G. D., Trachtenberg, J. T., Wilbrecht, L., Shepherd, G. M., Zhang, Xi., Knott, G. W., Svoboda, Karel. (January 2005) Transient and persistent dendritic spines in the neocortex in vivo. Neuron, 45 (2). pp. 279-91. ISSN 0896-6273 (Print)

Hrvatin, S., Hochbaum, D. R., Nagy, M. A., Cicconet, M., Robertson, K., Cheadle, L., Zilionis, R., Ratner, A., Borges-Monroy, R., Klein, A. M., Sabatini, B. L., Greenberg, M. E. (January 2018) Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex. Nat Neurosci, 21 (1). pp. 120-129. ISSN 1097-6256 (Print)1097-6256

Huang, Z. J., Di Cristo, G. (August 2008) Time to change: retina sends a messenger to promote plasticity in visual cortex. Neuron, 59 (3). pp. 355-8. ISSN 1097-4199 (Electronic)

Huang, Z. J., Kirkwood, A., Pizzorusso, T., Porciatti, V., Morales, B., Bear, M. F., Maffei, L., Tonegawa, S. (1999) BDNF regulates the maturation of inhibition and the critical period of plasticity in mouse visual cortex. Cell, 98 (6). pp. 739-755. ISSN 00928674 (ISSN)

Huo, B. X., Zeater, N., Lin, M. K., Takahashi, Y. S., Hanada, M., Nagashima, J., Lee, B. C., Hata, J., Zaheer, A., Grunert, U., Miller, M. I., Rosa, M. G. P., Okano, H., Martin, P. R., Mitra, P. P. (July 2019) Relation of koniocellular layers of dorsal lateral geniculate to inferior pulvinar nuclei in common marmosets. Eur J Neurosci. ISSN 0953-816x (Public Dataset)

Ibrahim, Leena Ali, Huang, Shuhan, Fernandez-Otero, Marian, Sherer, Mia, Qiu, Yanjie, Vemuri, Spurti, Xu, Qing, Machold, Robert, Pouchelon, Gabrielle, Rudy, Bernardo, Fishell, Gord (November 2021) Bottom-up inputs are required for establishment of top-down connectivity onto cortical layer 1 neurogliaform cells. Neuron, 109 (21). 3473-3485.e5. ISSN 0896-6273

Javadzadeh, Mitra, Hofer, Sonja B (August 2022) Dynamic causal communication channels between neocortical areas. Neuron, 110 (15). 2470-2483.e7. ISSN 0896-6273

Jiang, B., Huang, Z. J., Morales, B., Kirkwood, A. (2005) Maturation of GABAergic transmission and the timing of plasticity in visual cortex. Brain Research Reviews, 50 (1). pp. 126-133. ISSN 01650173 (ISSN)

Koulakov, A. A., Chklovskii, D. B. (June 2002) Direction of motion maps in the visual cortex: a wire length minimization approach. Neurocomputing, 44. pp. 489-494. ISSN 0925-2312

Koulakov, A. A., Chklovskii, D. B. (February 2001) Orientation preference patterns in mammalian visual cortex: A wire length minimization approach. Neuron, 29 (2). pp. 519-527. ISSN 0896-6273

Koulakov, A. A., Hromadka, T., Zador, A. M. (March 2009) Correlated Connectivity and the Distribution of Firing Rates in the Neocortex. J Neurosci, 29 (12). pp. 3685-3694. ISSN 0270-6474

Krishnan, K., Wang, B. S., Lu, J., Wang, L., Maffei, A., Cang, J., Huang, Z. J. (August 2015) MeCP2 regulates the timing of critical period plasticity that shapes functional connectivity in primary visual cortex. Proc Natl Acad Sci U S A, 112 (34). E4782-E4791. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Lazarus, M. S., Huang, Z. J. (May 2010) Differential Impact of GAD67 Deficiency on Inhibitory Synaptic Transmission in Primary Visual vs. Prefrontal Cortex in Mice. Biological Psychiatry, 67 (9). p. 909. ISSN 0006-3223

Lazarus, M. S., Huang, Z. J. (August 2011) Distinct maturation profiles of perisomatic and dendritic targeting GABAergic interneurons in the mouse primary visual cortex during the critical period of ocular dominance plasticity. Journal of Neurophysiology, 106 (2). pp. 775-787. ISSN 0022-3077

Lee, S. H., Kwan, A. C., Zhang, S., Phoumthipphavong, V., Flannery, J. G., Masmanidis, S. C., Taniguchi, H., Huang, Z. J., Zhang, F., Boyden, E. S., Deisseroth, K., Dan, Y. (August 2012) Activation of specific interneurons improves V1 feature selectivity and visual perception. Nature, 488 (7411). pp. 379-383. ISSN 0028-0836

Lendvai, B., Stern, E. A., Chen, B., Svoboda, K. (April 2000) Experience-dependent plasticity of dendritic spines in the developing rat barrel cortex in vivo. Nature, 404 (6780). pp. 876-881. ISSN 0028-0836

Liu, Y., Li, M., Zhang, X., Lu, Y., Gong, H., Yin, J., Chen, Z., Qian, L., Yang, Y., Andolina, I. M., Shipp, S., McLoughlin, N., Tang, S., Wang, W. (August 2020) Hierarchical Representation for Chromatic Processing across Macaque V1, V2, and V4. Neuron, 108 (3). pp. 538-550. ISSN 0896-6273

Lu, J., Tucciarone, J., Lin, Y., Huang, Z. J. (November 2014) Input-specific maturation of synaptic dynamics of parvalbumin interneurons in primary visual cortex. Proceedings of the National Academy of Sciences of the United States of America, 111 (47). pp. 16895-16900. ISSN 0027-8424

Majka, P., Rosa, M. G. P., Bai, S., Chan, J. M., Huo, B. X., Jermakow, N., Lin, M. K., Takahashi, Y. S., Wolkowicz, I. H., Worthy, K. H., Rajan, R., Reser, D. H., Wójcik, D. K., Okano, H., Mitra, P. P. (October 2018) Unidirectional monosynaptic connections from auditory areas to the primary visual cortex in the marmoset monkey. Brain Structure and Function, 224 (1). pp. 111-131. ISSN 18632653 (ISSN)

Mesik, L., Ma, W. P., Li, L. Y., Ibrahim, L. A., Huang, Z. J., Zhang, L. I., Tao, H. W. (May 2015) Functional response properties of VIP-expressing inhibitory neurons in mouse visual and auditory cortex. Front Neural Circuits, 9. p. 22. ISSN 1662-5110 (Electronic)1662-5110 (Linking)

Miraucourt, L. S., da Silva, J. S., Burgos, K., Li, J., Abe, H., Ruthazer, E. S., Cline, H. T. (January 2012) GABA expression and regulation by sensory experience in the developing visual system. PLoS ONE, 7 (1). ISSN 19326203 (ISSN)

Mohanty, A., Li, Q., Tadayon, M. A., Roberts, S. P., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A., Lipson, M. (February 2020) Reconfigurable nanophotonic silicon probes for sub-millisecond deep-brain optical stimulation. Nat Biomed Eng, 4 (2). pp. 223-231. ISSN 2157-846x (Public Dataset)

Nedivi, E., Javaherian, A., Cantallops, I., Cline, H. T. (July 2001) Developmental regulation of CPG15 expression in Xenopus. Journal of Comparative Neurology, 435 (4). pp. 464-473. ISSN 0021-9967

Nienborg, H., Hasenstaub, A., Nauhaus, I., Taniguchi, H., Huang, Z. J., Callaway, E. M. (July 2013) Contrast dependence and differential contributions from somatostatin- and parvalbumin-expressing neurons to spatial integration in mouse v1. Journal of Neuroscience, 33 (27). pp. 11145-54. ISSN 0270-6474

Oberauer, K., Stoneking, C., Wabersich, D., Lin, H. Y. (May 2017) Hierarchical Bayesian measurement models for continuous reproduction of visual features from working memory. J Vis, 17 (5). p. 11. ISSN 1534-7362

Pfeffer, C. K., Xue, M., He, M., Huang, Z. J., Scanziani, M. (August 2013) Inhibition of inhibition in visual cortex: The logic of connections between molecularly distinct interneurons. Nature Neuroscience, 16 (8). pp. 1068-1076. ISSN 10976256

Prechtl, J. C., Cohen, L. B., Pesaran, B., Mitra, P. P., Kleinfeld, D. (1997) Visual stimuli induce waves of electrical activity in turtle cortex. Proceedings of the National Academy of Sciences of the United States of America, 94 (14). pp. 7621-7626. ISSN 00278424 (ISSN)

Ruthazer, E. S., Akerman, C. J., Cline, H. T. (July 2003) Control of axon branch dynamics by correlated activity in vivo. Science, 301 (5629). pp. 66-70. ISSN 0036-8075

Seely, J. S., Kaufman, M. T., Ryu, S. I., Shenoy, K. V., Cunningham, J. P., Churchland, M. M. (November 2016) Tensor Analysis Reveals Distinct Population Structure that Parallels the Different Computational Roles of Areas M1 and V1. PLoS Comput Biol, 12 (11). e1005164. ISSN 1553-7358 (Electronic)1553-734X (Linking)

Shi, Yan-Liang, Steinmetz, Nicholas A, Moore, Tirin, Boahen, Kwabena, Engel, Tatiana A (January 2022) Cortical state dynamics and selective attention define the spatial pattern of correlated variability in neocortex. Nature Communications, 13 (1). p. 44. ISSN 2041-1723

Smith, A. L., Parsons, C. H., Lanyon, R. G., Bizley, J. K., Akerman, C. J., Baker, G. E., Dempster, A. C., Thompson, I. D., King, A. J. (June 2004) An investigation of the role of auditory cortex in sound localization using muscimol-releasing Elvax. European Journal of Neuroscience, 19 (11). pp. 3059-3072. ISSN 0953-816X

Song, S., Sjöström, P. J., Reigl, M., Nelson, S., Chklovskii, D. B. (March 2005) Highly nonrandom features of synaptic connectivity in local cortical circuits. PLoS Biol, 3 (3). e68. ISSN 1545-7885 (Electronic)

Stepanyants, A., Hirsch, J. A., Martinez, L. M., Kisvarday, Z. F., Ferecsko, A. S., Chklovskii, D. B. (January 2008) Local Potential Connectivity in Cat Primary Visual Cortex. Cerebral Cortex, 18 (1). pp. 13-28.

Triplett, J. W., Pfeiffenberger, C., Yamada, J., Stafford, B. K., Sweeney, N. T., Litke, A. M., Sher, A., Koulakov, A. A., Feldheim, D. A. (November 2011) Competition is a driving force in topographic mapping. Proceedings of the National Academy of Sciences of the United States of America, 108 (47). pp. 19060-19065. ISSN 00278424

Umakantha, Akash, Morina, Rudina, Cowley, Benjamin R, Snyder, Adam C, Smith, Matthew A, Yu, Byron M (September 2021) Bridging neuronal correlations and dimensionality reduction. Neuron, 109 (17). 2740-2754.e12. ISSN 0896-6273

Van Keuren-Jensen, K. R., Cline, H. T. (September 2008) Homer proteins shape Xenopus optic tectal cell dendritic arbor development in vivo. Developmental Neurobiology, 68 (11). pp. 1315-1324. ISSN 1932-846X

Wang, Bor-Shuen, Bernardez Sarria, Maria Sol, An, Xu, He, Miao, Alam, Nazia M, Prusky, Glen T, Crair, Michael C, Huang, Z Josh (February 2021) Retinal and Callosal Activity-Dependent Chandelier Cell Elimination Shapes Binocularity in Primary Visual Cortex. Neuron, 109 (3). 502-515.e7. ISSN 0896-6273

Williamson, Ryan C, Cowley, Benjamin R, Litwin-Kumar, Ashok, Doiron, Brent, Kohn, Adam, Smith, Matthew A, Yu, Byron M (December 2016) Scaling Properties of Dimensionality Reduction for Neural Populations and Network Models. PLoS Computational Biology, 12 (12). e1005141. ISSN 1553-734X

Zeraati, Roxana, Shi, Yan-Liang, Steinmetz, Nicholas, Gieselmann, Marc, Thiele, Alexander, Moore, Tirin, Levina, Anna, Engel, Tatiana (2021) Intrinsic timescales in the visual cortex change with selective attention and reflect spatial connectivity. bioRxiv. (Submitted)

Zeraati, Roxana, Shi, Yan-Liang, Steinmetz, Nicholas A, Gieselmann, Marc A, Thiele, Alexander, Moore, Tirin, Levina, Anna, Engel, Tatiana A (April 2023) Intrinsic timescales in the visual cortex change with selective attention and reflect spatial connectivity. Nature Communications, 14 (1). p. 1858. ISSN 2041-1723

Zhang, Anqi, Zador, Anthony M (July 2022) Diversity and task-dependence of task representations in V1 during freely-moving decisions. bioRxiv. (Submitted)

Zhang, Anqi, Zador, Anthony M (December 2023) Neurons in the primary visual cortex of freely moving rats encode both sensory and non-sensory task variables. PLoS Biology, 21 (12). e3002384. ISSN 1545-7885

Zhu, J. J., Lo, F. S. (March 2000) Recurrent inhibitory circuitry in the deep layers of the rabbit superior colliculus. Journal of Physiology, 523 (3). pp. 731-740. ISSN 0022-3751

van Kempen, J., Gieselmann, M. A., Boyd, M., Steinmetz, N. A., Moore, T., Engel, T. A., Thiele, A. (December 2020) Top-down coordination of local cortical state during selective attention. Neuron. ISSN 0896-6273

Conference or Workshop Item

Auguste, YSS, Isko, E, Cheadle, LM (July 2021) Sensory experience shapes non-neuronal transcriptomic plasticity and cell:cell interactions in primary visual cortex. In: European Meeting on Glial Cells in Health and Disease.

Kannan, UV, Palaniswamy, Ramesh, Cain, Nicholas, Harris, Julie, Osten, Pavel (August 2019) Characterizing spatial distribution of neuronal cell types in visual areas of mice brain imaged using Serial 2-photon tomography. In: ARVO Imaging in the Eye Conference.

Klindt, David, Acosta, Francisco, Conwell, Colin, Sanborn, Sophia, Miolane, Nina (December 2023) Evaluation of Representational Similarity Scores Across Human Visual Cortex. In: UniReps: the First Workshop on Unifying Representations in Neural Models.

Thesis

Krasniak, Christopher (April 2022) Mesoscale imaging, inactivation, and collaboration in a standardized visual decision-making task. PhD thesis, Cold Spring Harbor Laboratory.

Zhang, Anqi (July 2020) Representations in Rodent Primary Visual Cortex During Visual Discrimination. PhD thesis, Cold Spring Harbor.