Items where Subject is "protein expression"

A

Antberg, Linn, Cifani, Paolo, Sandin, Marianne, Levander, Fredrik, James, Peter (May 2012) Critical Comparison of Multidimensional Separation Methods for Increasing Protein Expression Coverage. Journal of Proteome Research, 11 (5). pp. 2644-2652. ISSN 1535-3893

Aznarez, Isabel, Nomakuchi, Tomoki T., Tetenbaum-Novatt, Jaclyn, Rahman, Mohammad Alinoor, Fregoso, Oliver, Rees, Holly, Krainer, Adrian R. (May 2018) Mechanism of Nonsense-Mediated mRNA Decay Stimulation by Splicing Factor SRSF1. Cell Reports, 23 (7). pp. 2186-2198. ISSN 2211-1247

B

Ballester, R., Michaeli, T., Ferguson, K., Xu, H. P., McCormick, F., Wigler, M. H. (November 1989) Genetic analysis of mammalian GAP expressed in yeast. Cell, 59 (4). pp. 681-6. ISSN 0092-8674

Barford, D. (December 1991) Molecular mechanisms for the control of enzymic activity by protein phosphorylation. Biochim Biophys Acta, 1133 (1). pp. 55-62. ISSN 0006-3002 (Print)0006-3002 (Linking)

Barnhart, Michael D, Yang, Yi, Nakagaki-Silva, Erick E, Hammond, Thomas H, Pizzinga, Mariavittoria, Gooding, Clare, Stott, Katherine, Smith, Christopher WJ (November 2022) Phosphorylation of the smooth muscle master splicing regulator RBPMS regulates its splicing activity. Nucleic Acids Research, 50 (20). pp. 11895-11915. ISSN 0305-1048

Berasain, C. (May 2010) New therapeutic targets in HCC: Reptin ATPase and HCC senescence. Journal of Hepatology, 52 (5). pp. 633-634. ISSN 0168-8278 (Electronic) 0168-8278 (Linking)

Bibel, Brianna, Elkayam, Elad, Silletti, Steve, Komives, Elizabeth, Joshua-Tor, Leemor (January 2022) Target binding triggers hierarchical phosphorylation of human Argonaute-2 to promote target release. Elife, 11 (e76908). ISSN 2050-084x

Bibel, Brianna, Elkayam, Elad, Silletti, Steve, Komives, Elizabeth A, Joshua-Tor, Leemor (May 2022) Target binding triggers hierarchical phosphorylation of human Argonaute-2 to promote target release. eLife, 11. ISSN 2050-084X

Birchmeier, C., Broek, D., Wigler, M. H. (December 1985) RAS proteins can induce meiosis in Xenopus oocytes. Cell, 43 (3 PART). pp. 615-622.

Boguth, C. A., Singh, Puja, Huang, C. C., Tesmer, J. J. G. (August 2010) Molecular basis for activation of G protein-coupled receptor kinases. EMBO Journal, 29 (19). pp. 3249-3259.

Boivin, B., Tonks, N. K. , Yang, M. (August 2010) Targeting the reversibly oxidized protein tyrosine phosphatase superfamily. Science Signaling, 3 (137).

Bommert, P., Nagasawa, N. S., Jackson, D. (March 2013) Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus. Nature Genetics, 45 (3). pp. 334-337. ISSN 1061-4036

Bonham, ChristopherA, Mandati, Vinay, Singh, RakeshK, Pappin, DarrylJ, Tonks, NicholasK (March 2023) Coupling substrate-trapping with proximity-labeling to identify protein tyrosine phosphatase PTP1B signaling networks. Journal of Biological Chemistry. p. 104582. ISSN 0021-9258

Bowles, D. J., Marcus, S. E., Pappin, D. J., Findlay, J. B., Eliopoulos, E., Maycox, P. R., Burgess, J. (April 1986) Posttranslational processing of concanavalin A precursors in jackbean cotyledons. J Cell Biol, 102 (4). pp. 1284-97. ISSN 0021-9525 (Print)0021-9525 (Linking)

Brina, Daniela, Ponzoni, Adele, Troiani, Martina, Calì, Bianca, Pasquini, Emiliano, Attanasio, Giuseppe, Mosole, Simone, Mirenda, Michela, D'Ambrosio, Mariantonietta, Colucci, Manuel, Guccini, Ilaria, Revandkar, Ajinkya, Alajati, Abdullah, Tebaldi, Toma, Donzel, Deborah, Lauria, Fabio, Parhizgari, Nahjme, Valdata, Aurora, Maddalena, Martino, Calcinotto, Arianna, Bolis, Marco, Rinaldi, Andrea, Barry, Simon, Rüschoff, Jan Hendrik, Sabbadin, Marianna, Sumanasuriya, Semini, Crespo, Mateus, Sharp, Adam, Yuan, Wei, Grinu, Mathew, Boyle, Alexandra, Miller, Cynthia, Trotman, Lloyd, Delaleu, Nicolas, Fassan, Matteo, Moch, Holger, Viero, Gabriella, de Bono, Johann, Alimonti, Andrea (August 2023) The Akt/mTOR and MNK/eIF4E pathways rewire the prostate cancer translatome to secrete HGF, SPP1 and BGN and recruit suppressive myeloid cells. Nature Cancer, 4 (8). pp. 1102-1121. ISSN 2662-1347 (Public Dataset)

Brown, Fiona C, Still, Eric, Koche, Richard P, Yim, Christina Y, Takao, Sumiko, Cifani, Paolo, Reed, Casie, Gunasekera, Shehana, Ficarro, Scott B, Romanienko, Peter, Mark, Willie, McCarthy, Craig, de Stanchina, Elisa, Gonen, Mithat, Seshan, Venkatraman, Bhola, Patrick, O'Donnell, Conor, Spitzer, Barbara, Stutzke, Crystal, Lavallée, Vincent-Philippe, Hébert, Josée, Krivtsov, Andrei V, Melnick, Ari, Paietta, Elisabeth M, Tallman, Martin S, Letai, Anthony, Sauvageau, Guy, Pouliot, Gayle, Levine, Ross, Marto, Jarrod A, Armstrong, Scott A, Kentsis, Alex (April 2018) MEF2C Phosphorylation Is Required for Chemotherapy Resistance in Acute Myeloid Leukemia. Cancer Discovery, 8 (4). pp. 478-497. ISSN 2159-8274

Burridge, K., Feramisco, J. R. (1980) The Association between a Micro-Injected Cytoskeletal Protein and Cellular Fibronectin. European Journal of Cell Biology, 22 (1). p. 350.

Byrd, C., Turner, G. C., Varshavsky, A. (1998) The N-end rule pathway controls the import of peptides through degradation of a transcriptional repressor. Embo Journal, 17 (1). pp. 269-277. ISSN 02614189 (ISSN)

C

Cabodi, S., Tinnirello, A., Bisaro, B., Tornillo, G., Camacho-Leal, M. D., Forni, G., Cojoca, R., Iezzi, M., Amici, A., Montani, M., Eva, A., Di Stefano, P., Muthuswamy, S. K., Tarone, G., Turco, E., Defilippi, P. (October 2010) p130Cas is an essential transducer element in ErbB2 transformation. Faseb J, 24 (10). pp. 3796-3808. ISSN 1530-6860 (Electronic) 0892-6638 (Linking)

Castellano, S., Macchi, F., Scali, M., Huang, Z. J., Bozzi, Y. (September 2006) Cytosolic branched chain aminotransferase (BCATc) mRNA is up-regulated in restricted brain areas of BDNF transgenic mice. Brain Research, 1108 (1). pp. 12-18. ISSN 00068993

Charbonneau, H., Tonks, N. K. (1992) 1002 Protein Phosphatases? Annual Review of Cell Biology, 8. pp. 463-493. ISSN 0743-4634

Chiang, H-C., Iijima, K., Hakker, I., Zhong, Y. (June 2009) Distinctive roles of different {beta}-amyloid 42 aggregates in modulation of synaptic functions. FASEB J., 23 (6). pp. 1969-1977.

Chien, Y., Lowe, S. W. (2008) Secreting tumor suppression. Cell, 132 (3). pp. 339-41. ISSN 0092-8674

Cifani, Paolo, Kentsis, Alex (October 2022) Quantitative Cell Proteomic Atlas: Pathway-Scale Targeted Mass Spectrometry for High-Resolution Functional Profiling of Cell Signaling. Journal of Proteome Research, 21 (10). pp. 2535-2544. ISSN 1535-3893

Collins, G. A. (March 2010) Activator Turnover and Proteolysis In Transcriptional Activation. PhD thesis, Cold Spring Harbor Laboratory.

Collins, G. A., Gomez, T. A., Deshaies, R. J., Tansey, W. P. (November 2010) Combined chemical and genetic approach to inhibit proteolysis by the proteasome. Yeast, 27 (11). pp. 965-974. ISSN 1097-0061 (Electronic) 0749-503X (Linking)

Croll, S. D., Wiegand, S. J., Anderson, K. D., Lindsay, R. M., Nawa, H. (August 1994) Regulation of Neuropeptides in Adult-Rat Forebrain by the Neurotrophins Bdnf and Ngf. European Journal of Neuroscience, 6 (8). pp. 1343-1353. ISSN 0953-816X

Curtin, K. D., Huang, Z. J., Rosbash, M. (1995) Temporally regulated nuclear entry of the Drosophila period protein contributes to the circadian clock. Neuron, 14 (2). pp. 365-372. ISSN 08966273 (ISSN)

D

Delas, M. J., Jackson, B. T., Kovacevic, T., Vangelisti, S., Munera Maravilla, E., Wild, S. A., Stork, E. M., Erard, N., Knott, S. R. V., Hannon, G. J. (April 2019) lncRNA Spehd Regulates Hematopoietic Stem and Progenitor Cells and Is Required for Multilineage Differentiation. Cell Rep, 27 (3). 719-729.e6.

Doehlemann, G., van der Linde, K., Amann, D., Schwammbach, D., Hof, A., Mohanty, A., Jackson, D. P., Kahmann, R. (February 2009) Pep1, a Secreted Effector Protein of Ustilago maydis, Is Required for Successful Invasion of Plant Cells. Plos Pathogens, 5 (2). e1000290. ISSN 1553-7366

Dong, D. L., Liu, R., Sherlock, R., Wigler, M. H., Nestler, H. P. (March 1999) Molecular forceps from combinatorial libraries prevent the farnesylation of Ras by binding to its carboxyl terminus. Chem Biol, 6 (3). pp. 133-41. ISSN 1074-5521 (Print)

Dow, L. E., Elsum, I. A., King, C. L., Kinross, K. M., Richardson, H. E., Humbert, P. O. (2008) Loss of human Scribble cooperates with H-Ras to promote cell invasion through deregulation of MAPK signalling. Oncogene, 27 (46). pp. 5988-6001.

Dutta, A., Din, S., Brill, S. J., Stillman, B. (1991) Phosphorylation of replication protein A: A role for cdc2 kinase in G1/S regulation. Cold Spring Harbor Symposia on Quantitative Biology, 56. pp. 315-324. ISSN 00917451 (ISSN)

de Bivort, B. L., Guo, H.- F., Zhong, Y. (April 2009) Notch signaling is required for activity-dependent synaptic plasticity at the Drosophila neuromuscular junction. J Neurogenet, 23 (4). pp. 395-404. ISSN 1563-5260 (Electronic)

de Sevilla, D. F., Núñez, A., Borde, M., Malinow, R., Buño, W. (2008) Cholinergic-mediated IP3-ereceptor activation induces long-lasting synaptic enhancement in CA1 pyramidal neurons. Journal of Neuroscience, 28 (6). pp. 1469-1478. ISSN 0270-6474

E

Efrat, S., Teitelman, G., Anwar, M., Ruggiero, D., Hanahan, D. (September 1988) Glucagon gene regulatory region directs oncoprotein expression to neurons and pancreatic alpha cells. Neuron, 1 (7). pp. 605-13. ISSN 0896-6273

Esteban, J. A., Shi, S. H., Wilson, C., Nuriya, M., Huganir, R. L., Malinow, R. (February 2003) PKA phosphorylation of AMPA receptor subunits controls synaptic trafficking underlying plasticity. Nature Neuroscience, 6 (2). pp. 136-143. ISSN 1097-6256

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Feigin, M. E., Malbon, C. C. (2008) OSTM1 regulates beta-catenin/Lef1 interaction and is required for Wnt/beta-catenin signaling. Cell Signal, 20 (5). 949-957 .

Feramisco, J., Sullivan, N., Kamata, T., Barsagi, D., Welch, W., Gross, M., Sweet, R., Rosenberg, M., Sathe, G., Fasano, O., Goldfarb, M., Wigler, M. H., Nitecki, D., Clark, R., Arnheim, N., McCormick, F. (1985) Microinjection of Ras Oncogene Proteins and Inhibitory Antibodies Specific for the Ras Oncogene Proteins into Living Normal and Transformed-Cells. Federation Proceedings, 44 (5). p. 1768. ISSN 0014-9446

Field, J., Broek, D., Kataoka, T., Wigler, M. H. (1987) Guanine nucleotide activation of, and competition between, RAS proteins from Saccharomyces cerevisiae. Molecular & Cellular Biology, 7 (6). pp. 2128-2133.

Field, J., Xu, H. P., Michaeli, T., Ballester, R., Sass, P., Wigler, M. H., Colicelli, J. (January 1990) Mutations of the adenylyl cyclase gene that block RAS function in Saccharomyces cerevisiae. Science, 247 (4941). pp. 464-7. ISSN 0036-8075

Flint, A. J., Gebbink, M. F., Franza, B. R., Hill, D. E., Tonks, N. K. (May 1993) Multi-site phosphorylation of the protein tyrosine phosphatase, PTP1B: identification of cell cycle regulated and phorbol ester stimulated sites of phosphorylation. Embo Journal, 12 (5). pp. 1937-1946. ISSN 0261-4189

Foa, L., Jensen, K., Rajan, I., Bronson, Ki., Gasperini, Ro., Worley, P. F., Tu, J. C., Cline, H. T. (2005) Homer expression in the Xenopus tadpole nervous system. J Comp Neurol, 487 (1). pp. 42-53. ISSN 0021-9967 (Print)

Franza, B. R. Jr (1990) Complex Protein Interactions at the Human Immunodeficiency Virus Type 1 Hiv-1 Direct Repeat Enhancer Structure a Paradigm for Database Analysis of Protein-Nucleic Acid Interactions. In: Human Retroviruses: proceedings of a Chimertech-UCLA symposium, held at Tamarron, Colorado, February 4-11, 1989. UCLA (University of California-Los Angeles) Symposia on Molecular and Cellular Biology New Series, 119 (ED.). Wiley-Liss, New York, pp. 181-190. ISBN 0471567302

Franza, B. R. Jr (1990) Strategies for the Study of the Regulation of Proteins That Control Mammalian Transcription. Proceedings American Association for Cancer Research Annual Meeting. p. 512.

Fraser, C. M., Arakawa, S., McCombie, W. R., Venter, J. C. (1989) Cloning, sequence analysis, and permanent expression of a human α2-adrenergic receptor in Chinese hamster ovary cells. Evidence for independent pathways of receptor coupling to adenylate cyclase attenuation and activation. Journal of Biological Chemistry, 264 (20). pp. 11754-11761. ISSN 00219258 (ISSN)

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Garton, A. J., Tonks, N. K. (August 1994) PTP-PEST: a protein tyrosine phosphatase regulated by serine phosphorylation. Embo Journal, 13 (16). pp. 3763-3771. ISSN 0261-4189

Gerst, J. E., Ferguson, K., Vojtek, A., Wigler, M. H., Field, J. (March 1991) CAP is a bifunctional component of the Saccharomyces cerevisiae adenylyl cyclase complex. Molecular & Cellular Biology, 11 (3). pp. 1248-57. ISSN 0270-7306

Gerst, J. E., Field, J., Ferguson, K., Wigler, M. H. (1990) Molecular and Phenotypic Analysis of Cap a Regulatory Element Involved in Mediating Both Ras Action and Amino Acid Balance. Yeast, 6 (SPEC. ). S174.

Gross, M., Sweet, R. W., Sathe, G., Yokoyama, S., Fasano, O., Goldfarb, M., Wigler, M. H., Rosenberg, M. (1985) Purification and characterization of human H-RAS proteins expressed in Escherichia coli. Molecular and Cellular Biology, 5 (5). pp. 1015-1024. ISSN 0270-7306

Gu, L., Ying, H. Q., Zheng, H. W., Murray, S. A., Xiao, Z. X. J. (June 2003) The MDM2 RING finger is required for cell cycle-dependent regulation of its protein expression. Febs Letters, 544 (1-3). pp. 218-222. ISSN 0014-5793

H

Hannon, G. J. (1995) Expression of cell cycle proteins using recombinant baculoviruses. In: Cell Cycle: Materials and Methods. Springer-Verlag, Berlin, pp. 231-242.

Herlands, L., Kishimoto, T., Birchmeier, C., Wigler, M. H., Koide, S. S. (December 1986) Induction of Oocyte Maturation by Injection of Oncogenic H-Ras Protein in the Starfish. Zoological Science, 3 (6). p. 1036. ISSN 0289-0003

Hossain, Manzar, Bhalla, Kuhulika, Stillman, Bruce (March 2021) Multiple, short protein binding motifs in ORC1 and CDC6 control the initiation of DNA replication. Molecular Cell. ISSN 1097-2765

Huang, L., Muthuswamy, S. K. (February 2010) Polarity protein alterations in carcinoma: a focus on emerging roles for polarity regulators. Current Opinion in Genetics and Development, 20 (1). pp. 41-50.

Husbands, A. Y., Aggarwal, V., Ha, T., Timmermans, M. C. (August 2016) In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes. Plant Cell, 28 (8). pp. 1783-94. ISSN 1532-298X (Electronic)1040-4651 (Linking)

I

Iijima, K., Chiang, H. C., Hearn, S. A., Hakker, I., Gatt, A., Shenton, C., Granger, L., Leung, A., Iijima-Ando, K., Zhong, Y. (February 2008) A beta 42 Mutants with Different Aggregation Profiles Induce Distinct Pathologies in Drosophila. PLoS ONE, 3 (2). e1703. ISSN 1932-6203 (Electronic)

Iijima-Ando, K., Hearn, S. A., Granger, L., Shenton, C., Gatt, A., Chiang, H. C., Hakker, I., Zhong, Y., Iijima, K. (July 2008) Overexpression of neprilysin reduces Alzheimer amyloid-beta 42 (A beta 42)-induced neuron loss and intraneuronal A beta 42 deposits but causes a reduction in cAMP-responsive element-binding protein-mediated transcription, age-dependent axon pathology, and premature death in Drosophila. Journal of Biological Chemistry, 283 (27). pp. 19066-19076. ISSN 0021-9258

J

Jia, H., Li, M., Li, W., Liu, L., Jian, Y., Yang, Z., Shen, X., Ning, Q., Du, Y., Zhao, R., Jackson, D., Yang, X., Zhang, Z. (February 2020) A Serine/Threonine Protein Kinase Encoding Gene KERNEL NUMBER PER ROW6 Regulates Maize Grain Yield. Nature Communications, 11 (988). pp. 1-11. ISSN 2041-1723 (Public Dataset)

Jiang, Y., Oron, T. R., Clark, W. T., Bankapur, A. R., D'Andrea, D., Lepore, R., Funk, C. S., Kahanda, I., Verspoor, K. M., Ben-Hur, A., Koo da, C. E., Penfold-Brown, D., Shasha, D., Youngs, N., Bonneau, R., Lin, A., Sahraeian, S. M., Martelli, P. L., Profiti, G., Casadio, R., Cao, R., Zhong, Z., Cheng, J., Altenhoff, A., Skunca, N., Dessimoz, C., Dogan, T., Hakala, K., Kaewphan, S., Mehryary, F., Salakoski, T., Ginter, F., Fang, H., Smithers, B., Oates, M., Gough, J., Toronen, P., Koskinen, P., Holm, L., Chen, C. T., Hsu, W. L., Bryson, K., Cozzetto, D., Minneci, F., Jones, D. T., Chapman, S., Bkc, D., Khan, I. K., Kihara, D., Ofer, D., Rappoport, N., Stern, A., Cibrian-Uhalte, E., Denny, P., Foulger, R. E., Hieta, R., Legge, D., Lovering, R. C., Magrane, M., Melidoni, A. N., Mutowo-Meullenet, P., Pichler, K., Shypitsyna, A., Li, B., Zakeri, P., ElShal, S., Tranchevent, L. C., Das, S., Dawson, N. L., Lee, D., Lees, J. G., Sillitoe, I., Bhat, P., Nepusz, T., Romero, A. E., Sasidharan, R., Yang, H., Paccanaro, A., Gillis, J., Sedeno-Cortes, A. E., Pavlidis, P., Feng, S., Cejuela, J. M., Goldberg, T., Hamp, T., Richter, L., Salamov, A., Gabaldon, T., Marcet-Houben, M., Supek, F., Gong, Q., Ning, W., Zhou, Y., Tian, W., Falda, M., Fontana, P., Lavezzo, E., Toppo, S., Ferrari, C., Giollo, M. (September 2016) An expanded evaluation of protein function prediction methods shows an improvement in accuracy. Genome Biol, 17 (1). p. 184. ISSN 1474-760X (Electronic)1474-7596 (Linking)

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Kang, H., Davis-Dusenbery, B. N., Nguyen, P. H., Lal, A., Lieberman, J., Van Aelst, L., Lagna, G., Hata, A. (February 2012) Bone morphogenetic protein 4 promotes vascular smooth muscle contractility by activating microRNA-21 (miR-21), which down-regulates expression of family of dedicator of cytokinesis (DOCK) proteins. Journal of Biological Chemistry, 287 (6). pp. 3976-3986. ISSN 00219258 (ISSN)

Kang, B., Pu, M., Hu, G., Wen, W., Dong, Z., Zhao, K., Stillman, B., Zhang, Z. (July 2011) Phosphorylation of H4 Ser 47 promotes HIRA-mediated nucleosome assembly. Genes and Development, 25 (13). pp. 1359-1364. ISSN 08909369 (ISSN)

Kannan, N., Haste, N., Taylor, S. S., Neuwald, A. F. (January 2007) The hallmark of AGC kinase functional divergence is its C-terminal tail, a cis-acting regulatory module. Proc Natl Acad Sci U S A, 104 (4). pp. 1272-7.

Kessels, H. W., Kopec, C. D., Klein, M. E., Malinow, R. (July 2009) Roles of stargazin and phosphorylation in the control of AMPA receptor subcellular distribution. Nat Neurosci, 12 (7). pp. 888-896.

Kim, Y. S., Choi, E. K., Yang, H. M., Kim, J., Yu, I. J., Marshak, D. R., Carp, R. I., Wisniewski, H. M. (1994) Increased Expression of S100-Beta in Brain of Im Mice Injected with 87v Scrapie Strain. Neurobiology of Aging, 15. S89-S89. ISSN 0197-4580

Kopec, C. D., Malinow, R. (December 2006) Neuroscience. Matters of size. Science, 314 (5805). pp. 1554-5. ISSN 1095-9203 (Electronic)

Koulen, P., Janowitz, T., Johnston, L. D., Ehrlich, B. E. (September 2000) Conservation of localization patterns of IP(3) receptor type 1 in cerebellar Purkinje cells across vertebrate species. J Neurosci Res, 61 (5). pp. 493-9. ISSN 0360-4012 (Print)0360-4012

Kozal, M. J., Shah, N., Shen, N., Yang, R., Fucini, R., Merigan, T. C., Richman, D. D., Morris, D., Hubbell, E., Chee, M., Gingeras, T. R. (1996) Extensive polymorphisms observed in HIV-1 clade B protease gene using high-density oligonucleotide arrays. Nature Medicine, 2 (7). pp. 753-759. ISSN 10788956 (ISSN)

Kwofie, M. A., Skowronski, J. (February 2008) Specific recognition of Rac2 and Cdc42 by DOCK2 and DOCK9 guanine nucleotide exchange factors. Journal of Biological Chemistry, 283 (6). pp. 3088-3096. ISSN 0021-9258

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Lavoie, C., Chevet, E., Roy, L., Tonks, N. K., Fazel, A., Posner, B. I., Paiement, J., Bergeron, J. J. M. (December 2000) Tyrosine phosphorylation of p97 regulates transitional endoplasmic reticulum assembly in vitro. Proceedings of the National Academy of Sciences of the United States of America, 97 (25). pp. 13637-13642. ISSN 0027-8424

Lei, K. J., Gluzman, Y., Pan, C. J., Chou, J. Y. (May 1992) Immortalization of Virus-Free Human Placental Cells That Express Tissue-Specific Functions. Molecular Endocrinology, 6 (5). pp. 703-712. ISSN 0888-8809

Li, B., Devidze, N., Barengolts, D., Prostak, N., Sphicas, E., Apicella, A. J., Malinow, R., Emamian, E. S. (September 2009) NMDA Receptor Phosphorylation at a Site Affected in Schizophrenia Controls Synaptic and Behavioral Plasticity. J Neurosci, 29 (38). pp. 11965-11972.

Liu, L. X., Lee, N. P. , Chan, V. W. , Xue, W., Zender, L., Zhang, C., Mao, M., Dai, H., Wang, X. L., Xu, M. Z. , Lee, T. K. , Ng, I. O. , Chen, Y., Kung, H.-f. , Lowe, S. W. , Poon, R. T. P. , Wang, J. H., Luk, J. M. (November 2009) Targeting cadherin-17 inactivates Wnt signaling and inhibits tumor growth in liver carcinoma. Hepatology, 50 (5). pp. 1453-1463. ISSN 1527-3350

Lucito, R., Schneider, R. J. (1993) Transcriptional activation by the hepatitis B virus X protein. In: Regulation of gene expression in animal viruses. Plenum Press, New York, pp. 67-80. ISBN 0306444089

M

Manley, J. L., Krainer, A. R. (2010) A rational nomenclature for serine/arginine-rich protein splicing factors (SR proteins). Genes and Development, 24 (11). pp. 1073-1074.

Marchione, Dylan M, Ilieva, Ilyana, Garcia, Benjamin A, Pappin, Darryl J, Wojcik, John B, Wilson, John P (August 2019) HYPERsol: flash-frozen results from archival FFPE samples for clinical proteomics. In: Molecular and Cellular Proteomics.

Misteli, T., Cáceres, J. F., Clement, J. Q., Krainer, A. R., Wilkinson, M. F., Spector, D. L. (1998) Serine phosphorylation of SR proteins is required for their recruitment to sites of transcription in vivo. Journal of Cell Biology, 143 (2). pp. 297-307. ISSN 0021-9525

Muratani, M., Gerlich, D., Janicki, S. M., Gebhard, M., Eils, R., Spector, D. L. (2002) Metabolic-energy-dependent movement of PML bodies within the mammalian cell nucleus. Nature Cell Biology, 4. pp. 106-110. ISSN 1465-7392

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Nandi, S., Gokhan, S., Dai, X. M., Wei, S. W., Enikolopov, G., Lin, H. S., Mehler, M. F., Stanley, E. R. (July 2012) The CSF-1 receptor ligands IL-34 and CSF-1 exhibit distinct developmental brain expression patterns and regulate neural progenitor cell maintenance and maturation. Developmental Biology, 367 (2). pp. 100-113. ISSN 0012-1606

Nolan, M. E., Aranda, V., Lee, S., Lakshmi, B., Basu, S., Allred, D. C., Muthuswamy, S. K. (October 2008) The polarity protein Par6 induces cell proliferation and is overexpressed in breast cancer. Cancer Res, 68 (20). pp. 8201-9.

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Pagani, M. R., Oishi, K., Gelb, B. D., Zhong, Y. (October 2009) The phosphatase SHP2 regulates the spacing effect for long-term memory induction. Cell, 139 (1). pp. 186-98. ISSN 1097-4172 (Electronic)

Park, C. Y., La Montagne, K. R., Tonks, N. K., Hayman, M. J. (October 1996) Cloning and expression of the chicken protein tyrosine phosphatase SH-PTP2. Gene, 177 (1-2). pp. 93-97. ISSN 0378-1119

Polyanskaya, Sofya A, Moreno, Rosamaria Y, Lu, Bin, Feng, Ruopeng, Yao, Yu, Irani, Seema, Klingbeil, Olaf, Yang, Zhaolin, Wei, Yiliang, Demerdash, Osama E, Benjamin, Lukas A, Weiss, Mitchell J, Zhang, Yan Jessie, Vakoc, Christopher R (January 2022) SCP4-STK35/PDIK1L complex is a dual phospho-catalytic signaling dependency in acute myeloid leukemia. Cell Reports, 38 (2). p. 110233. ISSN 2211-1247

Ponz-Sarvise, M., Corbo, V., Tiriac, H., Engle, D. D., Frese, K. K., Oni, T. E., Hwang, C. I., Ohlund, D., Chio, I. I. C., Baker, L. A., Filippini, D., Wright, K., Bapiro, T. E., Huang, P. S., Smith, P. D., Yu, K. H., Jodrell, D. I., Park, Y., Tuveson, D. A. (September 2019) Identification of Resistance Pathways Specific to Malignancy Using Organoid Models of Pancreatic Cancer. Clin Cancer Res, 25 (22). pp. 6742-6755. ISSN 1078-0432 (Print)1078-0432

Powers, S. (April 1991) Protein prenylation: a modification that sticks. Current Biology, 1 (2). pp. 114-6. ISSN 0960-9822

R

Rajah, Abira, Boudreau, Colton G, Ilie, Alina, Wee, Tse-Luen, Tang, Kaixi, Borisov, Aleksandar Z, Orlowski, John, Brown, Claire M (August 2019) Paxillin S273 Phosphorylation Regulates Adhesion Dynamics and Cell Migration through a Common Protein Complex with PAK1 and βPIX. Scientific Reports, 9 (1). p. 11430. ISSN 2045-2322

Ramachandran, C., Aebersold, R., Tonks, N. K., Pot, D. A. (May 1992) Sequential dephosphorylation of a multiply phosphorylated insulin receptor peptide by protein tyrosine phosphatases. Biochemistry, 31 (17). pp. 4232-4238. ISSN 0006-2960

Ray, S. S., Sengupta, R., Tiso, M., Haque, M. M., Sahoo, R., Konas, D. W., Aulak, K., Regulski, M. R., Tully, T., Stuehr, D. J., Ghosh, S. (October 2007) Reductase Domain of Drosophila melanogaster Nitric-Oxide Synthase: Redox Transformations, Regulation, and Similarity to Mammalian Homologues. Biochemistry, 46 (42). pp. 11865-11873. ISSN 0006-2960 (Print)

Ren, Zuen, Liang, Huizhi, Galbo, Phillip M, Dharmaratne, Malindrie, Kulkarni, Ameya S, Fard, Atefeh Taherian, Aoun, Marie Louise, Martinez-Lopez, Nuria, Suyama, Kimita, Benard, Outhiriaradjou, Zheng, Wei, Liu, Yang, Albanese, Joseph, Zheng, Deyou, Mar, Jessica C, Singh, Rajat, Prystowsky, Michael B, Norton, Larry, Hazan, Rachel B (February 2022) Redox signaling by glutathione peroxidase 2 links vascular modulation to metabolic plasticity of breast cancer. Proceedings of the National Academy of Sciences of USA, 119 (8). e2107266119-e2107266119. ISSN 0027-8424

Rice, A. P., Carlotti, F. (April 1990) Mutational analysis of the conserved cysteine-rich region of the human immunodeficiency virus type 1 Tat protein. J Virol, 64 (4). pp. 1864-8. ISSN 0022-538X (Print)0022-538X (Linking)

Robellet, Xavier, Thattikota, Yogitha, Wang, Fang, Wee, Tse-Luen, Pascariu, Mirela, Shankar, Sahana, Bonneil, Éric, Brown, Claire M, D'Amours, Damien (February 2015) A high-sensitivity phospho-switch triggered by Cdk1 governs chromosome morphogenesis during cell division. Genes & Development, 29 (4). pp. 426-439. ISSN 0890-9369

S

Sanghera, J. S., McNabb, C. K., Tonks, N., Pelech, S. L. (October 1991) Tyrosyl phosphorylation and activation of the myelin basic protein kinase p44mpk during sea star oocyte maturation. Biochimica Et Biophysica Acta, 1095 (2). pp. 153-160. ISSN 0006-3002

Seidenman, K. J., Steinberg, J. P., Huganir, R., Malinow, R. (October 2003) Glutamate receptor subunit 2 serine 880 phosphorylation modulates synaptic transmission and mediates plasticity in CA1 pyramidal cells. Journal of Neuroscience, 23 (27). pp. 9220-9228. ISSN 0270-6474

Sheu, Yi-Jun, Kawaguchi, Risa Karakida, Gillis, Jesse, Stillman, Bruce (December 2022) Prevalent and dynamic binding of the cell cycle checkpoint kinase Rad53 to gene promoters. eLife, 11. e84320. ISSN 2050-084X (Public Dataset)

Shuai, Y. C., Zhang, Y. S., Gao, L. W., Zhong, Y. (March 2011) Stress Resistance Conferred by Neuronal Expression of Dominant-Negative Rac in Adult Drosophila melanogaster. Journal of Neurogenetics, 25 (1-2). pp. 35-39. ISSN 0167-7063

Spector, D. L., White, E., Welch, W. J. (1987) Association of the Hsp70 Heat Shock Protein with Adenovirus E1a Proteins in Infected Cells. Journal of Cell Biology, 105 (4 PART). 108A.

Sreekrishna, K., Potenz, R. H. B., Cruze, J. A., McCombie, W. R., Parker, K. A., Nelles, L., Mazzaferro, P. K., Holden, K. A., Harrison, R. G., Wood, P. J., Phelps, D. A., Hubbard, C. E., Fuke, M. (1988) High level expression of heterologous proteins in methylotrophic yeast Pichia pastoris. Journal of Basic Microbiology, 28 (4). pp. 265-278. ISSN 0233111X (ISSN)

Sui, X., Kiser, T. D., Del Vecchio, R. L., Young, B. A., Gregoryev, D., Garcia, J. G. N., Tonks, N. K., Goldblum, S. E. (November 2001) PTP mu regulates the tyrosine phosphorylation state of VE-cadherin and the pulmonary microvascular endothelial paracellular pathway. Molecular Biology of the Cell, 12. 158A-158A. ISSN 1059-1524

T

Tabet, F., Schiffrin, E. L., Callera, G., He, Y., Yao, G., Ostman, A., Kappert, K., Tonks, N. K., Touyz, R. M. (July 2008) Redox-Sensitive Signaling by Angiotensin II Involves Oxidative Inactivation and Blunted Phosphorylation of Protein Tyrosine Phosphatase SHP-2 in Vascular Smooth Muscle Cells From SHR. Circ Res, 103 (2). pp. 149-158.

Tam, O. H., Pennisi, D., Wilkinson, L., Little, M. H., Wazin, F., Wan, V. L., Lovicu, F. J. (May 2018) Crim1 is required for maintenance of the ocular lens epithelium. Exp Eye Res, 170. pp. 58-66. ISSN 0014-4835

Timmermans, M. C. P., Hudson, A., Becraft, P. W., Nelson, T. (April 1999) ROUGH SHEATH2: A Myb protein that represses knox homeobox genes in maize lateral organ primordia. Science, 284 (5411). pp. 151-153. ISSN 0036-8075

Tolia, N.H., Joshua-Tor, L. (January 2006) Strategies for protein coexpression in Escherichia coli. Nat Methods, 3 (1). pp. 55-64. ISSN 1548-7091 (Print)

Tonks, Nicholas K (April 2023) Protein Tyrosine Phosphatases: Mighty oaks from little acorns grow. IUBMB Life, 75 (4). pp. 337-352. ISSN 1521-6543

Tonks, N. K. (October 2007) The protein tyrosine phosphatase superfamily of enzymes. Toxicology Letters, 172 (Supple). S10-S11. ISSN 0378-4274

Trotman, L. C., Alimonti, A., Scaglioni, P. P., Koutcher, J. A., Cordon-Cardo, C., Pandolfi, P. P. (May 2006) Identification of a tumour suppressor network opposing nuclear Akt function. Nature, 441 (7092). pp. 523-527. ISSN 00280836 (ISSN)

Truong, Thu H, Benner, Elizabeth A, Hagen, Kyla M, Temiz, Nuri A, Kerkvliet, Carlos Perez, Wang, Ying, Cortes-Sanchez, Emilio, Yang, Chieh-Hsiang, Trousdell, Marygrace C, Pengo, Thomas, Guillen, Katrin P, Welm, Bryan E, Dos Santos, Camila O, Telang, Sucheta, Lange, Carol A, Ostrander, Julie H (June 2021) PELP1/SRC-3-dependent regulation of metabolic PFKFB kinases drives therapy resistant ER+ breast cancer. Oncogene. ISSN 0950-9232

V

Vela, E., Hilari, J. M., Roca, X., Muñoz-Mármol, A. M., Ariza, A., Isamat, M. (December 2007) Multisite and bidirectional exonic splicing enhancer in CD44 alternative exon v3. RNA, 13 (12). pp. 2312-2323.

Vojtek, A., Haarer, B., Field, J., Gerst, J., Pollard, T. D., Brown, S., Wigler, M. H. (August 1991) Evidence for a functional link between profilin and CAP in the yeast S. cerevisiae. Cell, 66 (3). pp. 497-505. ISSN 0092-8674

W

Walhout, A. J., Sordella, R., Lu, X., Hartley, J. L., Temple, G. F., Brasch, M. A., Thierry-Mieg, N., Vidal, M. (January 2000) Protein interaction mapping in C. elegans using proteins involved in vulval development. Science, 287 (5450). pp. 116-22. ISSN 0036-8075 (Print)

Wang, Gang, Li, Jianlong, Bojmar, Linda, Chen, Haiyan, Li, Zhong, Tobias, Gabriel C, Hu, Mengying, Homan, Edwin A, Lucotti, Serena, Zhao, Fengbo, Posada, Valentina, Oxley, Peter R, Cioffi, Michele, Kim, Han Sang, Wang, Huajuan, Lauritzen, Pernille, Boudreau, Nancy, Shi, Zhanjun, Burd, Christin E, Zippin, Jonathan H, Lo, James C, Pitt, Geoffrey S, Hernandez, Jonathan, Zambirinis, Constantinos P, Hollingsworth, Michael A, Grandgenett, Paul M, Jain, Maneesh, Batra, Surinder K, DiMaio, Dominick J, Grem, Jean L, Klute, Kelsey A, Trippett, Tanya M, Egeblad, Mikala, Paul, Doru, Bromberg, Jacqueline, Kelsen, David, Rajasekhar, Vinagolu K, Healey, John H, Matei, Irina R, Jarnagin, William R, Schwartz, Robert E, Zhang, Haiying, Lyden, David (June 2023) Tumour extracellular vesicles and particles induce liver metabolic dysfunction. Nature, 618 (7964). pp. 374-382. ISSN 0028-0836 (Public Dataset)

Wang, Y., Boguski, M., Riggs, M., Rodgers, L., Wigler, M. (1991) sar1, a gene from Schizosaccharomyces pombe encoding a protein that regulates ras1. Cell Regulation, 2 (6). pp. 453-465. ISSN 10442030 (ISSN)

White, M. A., Nicolette, C., Minden, A., Polverino, A., Van Aelst, L., Karin, M., Wigler, M. H. (February 1995) Multiple Ras functions can contribute to mammalian cell transformation. Cell, 80 (4). pp. 533-41. ISSN 0092-8674 (Print)

White, M. A., Vale, T., Camonis, J. H., Schaefer, E., Wigler, M. H. (July 1996) A role for the Ral guanine nucleotide dissociation stimulator in mediating Ras-induced transformation. J Biol Chem, 271 (28). pp. 16439-42. ISSN 0021-9258 (Print)

Wu, Yue, Cui, Zhenling, Huang, Yen-Hua, de Veer, Simon J, Aralov, Andrey V, Guo, Zhong, Moradi, Shayli V, Hinton, Alexandra O, Deuis, Jennifer R, Guo, Shaodong, Chen, Kai-En, Collins, Brett M, Vetter, Irina, Herzig, Volker, Jones, Alun, Cooper, Matthew A, King, Glenn F, Craik, David J, Alexandrov, Kirill, Mureev, Sergey (January 2022) Towards a generic prototyping approach for therapeutically-relevant peptides and proteins in a cell-free translation system. Nature Communications, 13 (1). p. 260. ISSN 2041-1723

X

Xu, H. P., White, M., Marcus, S., Wigler, M. H. (January 1994) Concerted action of RAS and G proteins in the sexual response pathways of Schizosaccharomyces pombe. Mol Cell Biol, 14 (1). pp. 50-8. ISSN 0270-7306 (Print)

Xu, Zhuwei, Green, Brian, Benoit, Nicole, Sobel, Jack D, Schatz, Michael C, Wheelan, Sarah, Cormack, Brendan P (March 2021) Cell wall protein variation, break-induced replication, and subtelomere dynamics in Candida glabrata. Molecular Microbiology. ISSN 0950-382X

Y

Yang, Q., Co, D., Sommercorn, J., Tonks, N. K. (March 1993) Cloning and expression of PTP-PEST. A novel, human, nontransmembrane protein tyrosine phosphatase. Journal of Biological Chemistry, 268 (9). pp. 6622-6628. ISSN 0021-9258

Yang, Z., Xue, B., Umitsu, M., Ikura, M., Muthuswamy, S. K., Neel, B. G. (August 2012) The Signaling Adaptor Gab1 Regulates Cell Polarity by Acting as a PAR Protein Scaffold. Molecular Cell, 47 (3). pp. 469-483.

Yang, Huan, Lundbäck, Peter, Ottosson, Lars, Erlandsson-Harris, Helena, Venereau, Emilie, Bianchi, Marco E, Al-Abed, Yousef, Andersson, Ulf, Tracey, Kevin J (June 2021) Redox modifications of cysteine residues regulate the cytokine activity of HMGB1. Molecular Medicine, 27 (1). p. 58. ISSN 1076-1551

Z

Zebell, Sophia (March 2022) Phosphorylated bZIPs are ripe for discovery. Plant Physiology, 188 (3). pp. 1415-1416. ISSN 0032-0889

Zhang, S. H., Kobayashi, R., Graves, P. R., Piwnica-Worms, H., Tonks, N. K. (October 1997) Serine phosphorylation-dependent association of the band 4.1-related protein-tyrosine phosphatase PTPH1 with 14-3-3 beta protein. Journal of Biological Chemistry, 272 (43). pp. 27281-27287. ISSN 0021-9258

Zhang, S. H., Tonks, N. K. (December 1996) Phosphorylation-dependent association of band 4.1-related protein tyrosine phosphatase PTPH1 and 14-3-3B. Molecular Biology of the Cell, 7. p. 83. ISSN 1059-1524

Zhong, Y. (June 1995) Mediation of PACAP-like neuropeptide transmission by coactivation of Ras/Raf and cAMP signal transduction pathways in Drosophila. Nature, 375 (6532). pp. 588-92. ISSN 0028-0836 (Print)

Zou, L., Mitchell, J., Stillman, B. (February 1997) CDC45, a novel yeast gene that functions with the origin recognition complex and Mcm proteins in initiation of DNA replication. Molecular and Cellular Biology, 17 (2). pp. 553-63. ISSN 0270-7306