Items where Subject is "neuroscience"

Paper

Acerbi, L, Aguillon-Rodriguez, V, Ahmadi, M, Amjad, J, Angelaki, D, Arlandis, J, Ashwood, ZC, Banga, K, Barrell, H, Bayer, HM, Benson, J, Benson, B, Bhagat, J, Birman, D, Bougrova, K, Boussard, J, Bruijns, SA, Carandini, M, Catarino, J, Cazettes, F, Dan, Y, Davatolagh, F, Dayan, P, Denève, S, Dong, LL, Engel, T, Fabbri, M, Fiete, I, Findling, C, Freitas-Silva, L, Ganguli, S, Gercek, B, Ghani, N, Gordeliy, I, Haetzel, LM, Hausser, M, Hiratani, N, Hofer, S, Hu, F, Huber, F, Hurwitz, C, Khanal, A, Krasniak, CS, Krishnagopal, S, Krumin, M, Langdon, C, Latham, P, Lau, P, Lee, H, Liu, A, Mainen, ZF, Vergara, HM, Mcgrory, C, McMannon, B, Meijer, GT, Melin, M, Meshulam, L, Miska, NJ, Mitelut, C, Mohammadi, Z, Mrsic-Flogel, T, Murakami, M, Noel, JP, Nylund, K, Vazquez, AP, Paninski, L, Pezzotta, A, Picard, S, Pillow, JW, Pouget, A, Roth, N, Roy, NA, Saniee, K, Schaeffer, R, Shi, Y, Socha, KZ, Soitu, C, Svoboda, K, Taheri, M, Tessereau, C, Urai, AE, Varol, E, Wells, MJ, Whiteway, MR, Windolf, C, Witten, I, Wool, LE, Zador, AM, Bonacchi, N, Chapuis, GA, Churchland, AK, DeWitt, EEJ, Faulkner, M, Harris, KD, Huntenburg, JM, Hunter, M, Laranjeira, IC, Rossant, C, Sasaki, M, Schartner, MM (January 2023) A modular architecture for organizing, processing and sharing neurophysiology data. Nature Methods, 20 (3). pp. 403-407. ISSN 1548-7091 (Public Dataset)

Amit, Moran, Anastasaki, Corina, Dantzer, Robert, Demir, Ihsan Ekin, Deneen, Benjamin, Dixon, Karen O, Egeblad, Mikala, Gibson, Erin M, Hervey-Jumper, Shawn L, Hondermarck, Hubert, Magnon, Claire, Monje, Michelle, Na'ara, Shorook, Pan, Yuan, Repasky, Elizabeth A, Scheff, Nicole N, Sloan, Erica K, Talbot, Sebastien, Tracey, Kevin J, Trotman, Lloyd C, Valiente, Manuel, Van Aelst, Linda, Venkataramani, Varun, Venkatesh, Humsa S, Vermeer, Paola D, Winkler, Frank, Wong, Richard J, Gutmann, David H, Borniger, Jeremy C (April 2024) Next Directions in the Neuroscience of Cancers Arising outside the CNS. Cancer Discovery, 14 (4). pp. 669-673. ISSN 2159-8274

Anderson, Kristin R, Harris, Julie A, Ng, Lydia, Prins, Pjotr, Memar, Sara, Ljungquist, Bengt, Fürth, Daniel, Williams, Robert W, Ascoli, Giorgio A, Dumitriu, Dani (February 2021) Highlights from the Era of Open Source Web-Based Tools. The Journal of Neuroscience, 41 (5). pp. 927-936. ISSN 0270-6474

Aron, A.R., Ivry, R.B., Jeffery, K.J., Poldrack, R.A., Schmidt, R.A., Summerfield, C., Urai, A. E. (April 2020) How Can Neuroscientists Respond to the Climate Emergency? Neuron, 106 (1). pp. 17-20. ISSN 0896-6273

BICCN Data Ecosystem Collaboration, Hawrylycz, Michael, Martone, Maryann, Hof, Patrick, Lein, Ed, Regev, Aviv, Ascoli, Giorgio, Bjaalie, Jan, Dong, Hong-Wei, Ghosh, Satrajit, Gillis, Jesse, Hertzano, Ronna, Haynor, David, Kim, Yongsoo, Liu, Yufeng, Miller, Jeremy, Mitra, Partha, Mukamel, Eran, Osumi-Sutherland, David, Peng, Hanchuan, Ray, Patrick, Sanchez, Raymond, Ropelewski, Alex, Scheuermann, Richard, Tan, Shawn, Tickle, Timothy, Tilgner, Hagen, Varghese, Merina, Wester, Brock, White, Owen, Aevermann, Brian, Allemang, David, Ament, Seth, Athey, Thomas, Baker, Pamela, Baker, Cody, Baker, Katherine, Bandrowski, Anita, Bishwakarma, Prajal, Carr, Ambrose, Chen, Min, Choudhury, Roni, Cool, Jonah, Creasy, Heather, D'Orazi, Florence, Degatano, Kylee, Dichter, Benjamin, Ding, Song-Lin, Dolbeare, Tim, Ecker, Joseph, Fang, Rongxin, Fillion-Robin, Jean-Christophe, Fliss, Timothy, Gee, James, Gillespie, Tom, Gouwens, Nathan, Halchenko, Yaroslav, Harris, Nomi, Herb, Brian, Hintiryan, Houri, Hood, Gregory, Horvath, Sam, Jarecka, Dorota, Jiang, Shengdian, Khajouei, Farzaneh, Kiernan, Elizabeth, Kir, Huseyin, Kruse, Lauren, Lee, Changkyu, Lelieveldt, Boudewijn, Li, Yang, Liu, Hanqing, Markuhar, Anup, Mathews, James, Mathews, Kaylee, Miller, Michael, Mollenkopf, Tyler, Mufti, Shoaib, Mungall, Christopher, Ng, Lydia, Orvis, Joshua, Puchades, Maja, Qu, Lei, Receveur, Joseph, Ren, Bing, Sjoquist, Nathan, Staats, Brian, Thompson, Carol, Tward, Daniel, van Velthoven, Cindy, Wang, Quanxin, Xie, Fangming, Xu, Hua, Yao, Zizhen, Yun, Zhixi, Zeng, Hongkui, Zhang, Guo-Qiang, Zhang, Yun, Zheng, Jim, Zingg, Brian (2022) The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide. bioRxiv. (Submitted)

Banerjee, Arkarup, Isko, Emily, Harpole, Clifford, Zheng, Xiaoyue, Zhan, Huiqing, Davis, Martin, Zador, Anthony (September 2024) Selective expansion of motor cortical projections in the evolution of vocal novelty. bioRxiv. ISSN 2692-8205 (Submitted)

Banerjee, Arkarup, Egger, Robert, Long, Michael A (June 2021) Using focal cooling to link neural dynamics and behavior. Neuron. ISSN 0896-6273

Barabási, Dániel L, Bianconi, Ginestra, Bullmore, Ed, Burgess, Mark, Chung, SueYeon, Eliassi-Rad, Tina, George, Dileep, Kovács, István A, Makse, Hernán, Nichols, Thomas E, Papadimitriou, Christos, Sporns, Olaf, Stachenfeld, Kim, Toroczkai, Zoltán, Towlson, Emma K, Zador, Anthony M, Zeng, Hongkui, Barabási, Albert-László, Bernard, Amy, Buzsáki, György (August 2023) Neuroscience Needs Network Science. The Journal of Neuroscience, 43 (34). pp. 5989-5995. ISSN 0270-6474

Biderman, Dan, Whiteway, Matthew R, Hurwitz, Cole, Greenspan, Nicholas, Lee, Robert S, Vishnubhotla, Ankit, Warren, Richard, Pedraja, Federico, Noone, Dillon, Schartner, Michael, Huntenburg, Julia M, Khanal, Anup, Meijer, Guido T, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Socha, Karolina Z, Urai, Anne E, Cunningham, John P, Sawtell, Nathaniel B, Paninski, Liam (April 2023) Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling, and cloud-native open-source tools. bioRxiv. ISSN 2692-8205 (Submitted)

Bohland, Jason W, Wu, Caizhi, Barbas, Helen, Bokil, Hemant, Bota, Mihail, Breiter, Hans C, Cline, Hollis T, Doyle, John C, Freed, Peter J, Greenspan, Ralph J, Haber, Suzanne N, Hawrylycz, Michael, Herrera, Daniel G, Hilgetag, Claus C, Huang, Z Josh, Jones, Allan, Jones, Edward G, Karten, Harvey J, Kleinfeld, David, Kotter, Rolf, Lester, Henry A, Lin, John M, Mensh, Brett D, Mikula, Shawn, Panksepp, Jaak, Price, Joseph L, Safdieh, Joseph, Saper, Clifford B, Schiff, Nicholas D, Schmahmann, Jeremy D, Stillman, Bruce W, Svoboda, Karel, Swanson, Larry W, Toga, Arthur W, Essen, David C Van, Watson, James D, Mitra, Partha P (January 2009) A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale. PLoS Computational Biology. (Submitted)

Borniger, Jeremy C (October 2024) Cancer neuroscience at the brain-body interface. Genes & Development. ISSN 0890-9369

Borniger, Jeremy C (September 2021) Cancer as a tool for preclinical psychoneuroimmunology. Brain, Behavior, & Immunity - Health. p. 100351. ISSN 2666-3546

Chen, Xiaoyin, Fischer, Stephan, Rue, Mara CP, Zhang, Aixin, Mukherjee, Didhiti, Kanold, Patrick O, Gillis, Jesse, Zador, Anthony M (April 2024) Whole-cortex in situ sequencing reveals input-dependent area identity. Nature. ISSN 0028-0836

Chen, Xiaoyin, Sun, Yu-Chi, Zhan, Huiqing, Kebschull, Justus, Fischer, Stephan, Matho, Katherine, Josh Huang, Z, Gillis, Jesse, Zador, Anthony (July 2019) High-throughput mapping of long-range neuronal projection using <i>in situ</i> sequencing. BioRxiv. (Unpublished)

Cohen, Yarden, Engel, Tatiana A, Langdon, Christopher, Lindsay, Grace W, Ott, Torben, Peters, Megan AK, Shine, James M, Breton-Provencher, Vincent, Ramaswamy, Srikanth (November 2022) Recent Advances at the Interface of Neuroscience and Artificial Neural Networks. The Journal of Neuroscience, 42 (45). pp. 8514-8523. ISSN 1529-2401

Dalla, Christina, Jaric, Ivana, Pavlidi, Pavlina, Hodes, Georgia E, Kokras, Nikolaos, Bespalov, Anton, Kas, Martien J, Steckler, Thomas, Kabbaj, Mohamed, Würbel, Hanno, Marroco, Jordan, Tollkuhn, Jessica, Shansky, Rebecca, Bangasser, Debra, Becker, Jill B, McCarthy, Margaret, Ferland-Beckham, Chantelle (October 2023) Practical solutions for including Sex As a Biological Variable (SABV) in preclinical neuropsychopharmacological research. Journal of Neuroscience Methods. p. 110003. ISSN 0165-0270

Dvorkin, Roman, Shea, Stephen D (April 2021) Precise and pervasive phasic bursting in locus coeruleus during maternal behavior. bioRxiv. (Unpublished)

Engel, Tatiana A, Schölvinck, Marieke L, Lewis, Christopher M (October 2021) The diversity and specificity of functional connectivity across spatial and temporal scales. NeuroImage, 245. p. 118692. ISSN 1053-8119

Ferro, Austin, Arshad, Anosha, Boyd, Leah, Stanley, Tess, Berisha, Adrian, Vrudhula, Uma, Gomez, Adrian M, Borniger, Jeremy C, Cheadle, Lucas M (April 2024) The cytokine receptor Fn14 is a molecular brake on neuronal activity that mediates circadian function in vivo. bioRxiv. (Submitted)

Ferro, Austin, Auguste, Yohan SS, Cheadle, Lucas (2021) Microglia, Cytokines, and Neural Activity: Unexpected Interactions in Brain Development and Function. Frontiers in Immunology, 12. p. 703527. ISSN 1664-3224

Francis, Nikita, Borniger, Jeremy C (September 2021) Cancer as a homeostatic challenge: the role of the hypothalamus. Trends in Neurosciences. ISSN 0166-2236

Haery, Leila, Deverman, Benjamin, Matho, Katherine, Cetin, Ali, Woodard, Kenton, Cepko, Connie, Guerin, Karen, Rego, Meghan, Ersing, Ina, Bachle, Susanna, Kamens, Joanne, Fan, Melina (September 2019) Adeno-Associated Virus Technologies and Methods for Targeted Neuronal Manipulation. BioRxiv. (Unpublished)

Hansen, Kasper B, Wollmuth, Lonnie P, Bowie, Derek, Furukawa, Hiro, Menniti, Frank S, Sobolevsky, Alexander I, Swanson, Geoffrey T, Swanger, Sharon A, Greger, Ingo H, Nakagawa, Terunaga, McBain, Chris J, Jayaraman, Vasanthi, Low, Chian-Ming, Dell'Acqua, Mark L, Diamond, Jeffrey S, Camp, Chad R, Perszyk, Riley E, Yuan, Hongjie, Traynelis, Stephen F (October 2021) Structure, Function, and Pharmacology of Glutamate Receptor Ion Channels. Pharmacological Reviews, 73 (4). pp. 298-487. ISSN 0031-6997

Hawrylycz, Michael, Martone, Maryann E, Ascoli, Giorgio A, Bjaalie, Jan G, Dong, Hong-Wei, Ghosh, Satrajit S, Gillis, Jesse, Hertzano, Ronna, Haynor, David R, Hof, Patrick R, Kim, Yongsoo, Lein, Ed, Liu, Yufeng, Miller, Jeremy A, Mitra, Partha P, Mukamel, Eran, Ng, Lydia, Osumi-Sutherland, David, Peng, Hanchuan, Ray, Patrick L, Sanchez, Raymond, Regev, Aviv, Ropelewski, Alex, Scheuermann, Richard H, Tan, Shawn Zheng Kai, Thompson, Carol L, Tickle, Timothy, Tilgner, Hagen, Varghese, Merina, Wester, Brock, White, Owen, Zeng, Hongkui, Aevermann, Brian, Allemang, David, Ament, Seth, Athey, Thomas L, Baker, Cody, Baker, Katherine S, Baker, Pamela M, Bandrowski, Anita, Banerjee, Samik, Bishwakarma, Prajal, Carr, Ambrose, Chen, Min, Choudhury, Roni, Cool, Jonah, Creasy, Heather, D'Orazi, Florence, Degatano, Kylee, Dichter, Benjamin, Ding, Song-Lin, Dolbeare, Tim, Ecker, Joseph R, Fang, Rongxin, Fillion-Robin, Jean-Christophe, Fliss, Timothy P, Gee, James, Gillespie, Tom, Gouwens, Nathan, Zhang, Guo-Qiang, Halchenko, Yaroslav O, Harris, Nomi L, Herb, Brian R, Hintiryan, Houri, Hood, Gregory, Horvath, Sam, Huo, Bingxing, Jarecka, Dorota, Jiang, Shengdian, Khajouei, Farzaneh, Kiernan, Elizabeth A, Kir, Huseyin, Kruse, Lauren, Lee, Changkyu, Lelieveldt, Boudewijn, Li, Yang, Liu, Hanqing, Liu, Lijuan, Markuhar, Anup, Mathews, James, Mathews, Kaylee L, Mezias, Chris, Miller, Michael I, Mollenkopf, Tyler, Mufti, Shoaib, Mungall, Christopher J, Orvis, Joshua, Puchades, Maja A, Qu, Lei, Receveur, Joseph P, Ren, Bing, Sjoquist, Nathan, Staats, Brian, Tward, Daniel, van Velthoven, Cindy TJ, Wang, Quanxin, Xie, Fangming, Xu, Hua, Yao, Zizhen, Yun, Zhixi, Zhang, Yun Renee, Zheng, W Jim, Zingg, Brian (June 2023) A guide to the BRAIN Initiative Cell Census Network data ecosystem. PLoS Biology, 21 (6). e3002133. ISSN 1544-9173

Hermansen, Erik, Klindt, David A, Dunn, Benjamin A (November 2022) Uncovering 2-D toroidal representations in grid cell ensemble activity during 1-D behavior. bioRxiv. (Submitted)

Hwang, William L, Perrault, Ella N, Birbrair, Alexander, Mattson, Brandi J, Gutmann, David H, Mabbott, Donald J, Cukierman, Edna, Repasky, Elizabeth A, Sloan, Erica K, Zong, Hui, Demir, Ihsan Ekin, Saloman, Jami L, Borniger, Jeremy C, Hu, Jian, Dietrich, Jorg, Breunig, Joshua J, Çifcibaşı, Kaan, Ahmad Kasm, Khalil Ali, Valiente, Manuel, Wintermark, Max, Acharya, Munjal M, Scheff, Nicole N, D'Silva, Nisha J, Vermeer, Paola D, Wong, Richard J, Talbot, Sebastien, Hervey-Jumper, Shawn L, Wang, Timothy C, Ye, Yi, Pan, Yuan, Bunimovich, Yuri L, Amit, Moran (October 2024) Integrating priorities at the intersection of cancer and neuroscience. Cancer Cell. S1535-6108(24)00362. ISSN 1535-6108

International Brain Laboratory, Aguillon-Rodriguez, Valeria, Angelaki, Dora, Bayer, Hannah, Bonacchi, Niccolo, Carandini, Matteo, Cazettes, Fanny, Chapuis, Gaelle, Churchland, Anne K, Dan, Yang, Dewitt, Eric, Faulkner, Mayo, Forrest, Hamish, Haetzel, Laura, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Khanal, Anup, Krasniak, Christopher, Laranjeira, Ines, Mainen, Zachary F, Meijer, Guido, Miska, Nathaniel J, Mrsic-Flogel, Thomas D, Murakami, Masayoshi, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Rossant, Cyrille, Sanders, Joshua, Socha, Karolina, Terry, Rebecca, Urai, Anne E, Vergara, Hernando, Wells, Miles, Wilson, Christian J, Witten, Ilana B, Wool, Lauren E, Zador, Anthony M (May 2021) Standardized and reproducible measurement of decision-making in mice. eLife, 10. ISSN 2050-084X

Jarczok, M. N., Aguilar-Raab, C., Koenig, J., Kaess, M., Borniger, J. C., Nelson, R. J., Hall, M., Ditzen, B., Thayer, J. F., Fischer, J. E. (July 2018) The Heart's rhythm 'n' blues: Sex differences in circadian variation patterns of vagal activity vary by depressive symptoms in predominantly healthy employees. Chronobiol Int, 35 (7). pp. 896-909. ISSN 1525-6073 (Electronic)0742-0528 (Linking)

Karakaya, Eda, Oleinik, Natalia, Edwards, Jazlyn, Tomberlin, Jensen, Barker, Randy Bent, Berber, Burak, Ericsson, Maria, Alsudani, Habeeb, Ergul, Adviye, Beyaz, Semir, Lemasters, John J, Ogretmen, Besim, Albayram, Onder (February 2024) p17/C18-ceramide-mediated mitophagy is an endogenous neuroprotective response in preclinical and clinical brain injury. PNAS Nexus, 3 (2). ISSN 2752-6542

Kinney, Brian, Sahu, Shubham, Stec, Natalia, Hills-Muckey, Kelly, Adams, Dexter W, Wang, Jing, Jaremko, Matt, Joshua-Tor, Leemor, Keil, Wolfgang, Hammell, Christopher M (August 2023) A circadian-like gene network programs the timing and dosage of heterochronic miRNA transcription during C. elegans development. Developmental Cell. S1534-5807(23)00402. ISSN 1534-5807

Klindt, David (December 2022) Controlling neural network smoothness for neural algorithmic reasoning. Transactions on Machine Learning Research.

Klindt, David (October 2022) Understanding neural coding on latent manifolds by sharing features and dividing ensembles. arXiv. (Submitted)

Kumarasami, Ramdayalan, Verma, Richa, Pandurangan, Karthika, Ramesh, Jivitha Jyothi, Pandidurai, Sathish, Savoia, Stephen, Jayakumar, Jaikishan, Bota, Mihail, Mitra, Partha, Joseph, Jayaraj, Sivaprakasam, Mohanasankar (2023) A technology platform for standardized cryoprotection and freezing of large-volume brain tissues for high-resolution histology. Frontiers in Neuroanatomy, 17. p. 1292655. ISSN 1662-5129

Langlieb, Jonah, Sachdev, Nina S, Balderrama, Karol S, Nadaf, Naeem M, Raj, Mukund, Murray, Evan, Webber, James T, Vanderburg, Charles, Gazestani, Vahid, Tward, Daniel, Mezias, Chris, Li, Xu, Flowers, Katelyn, Cable, Dylan M, Norton, Tabitha, Mitra, Partha, Chen, Fei, Macosko, Evan Z (December 2023) The molecular cytoarchitecture of the adult mouse brain. Nature, 624 (7991). pp. 333-342. ISSN 0028-0836

Luo, Pei X, Zakharenkov, Hannah Cortez, Torres, Lisette Y, Rios, Roberto A, Gegenhuber, Bruno, Black, Alexis M, Xu, Christine K, Minie, Vanessa A, Tran, Amy M, Tollkuhn, Jessica, Trainor, Brian C (May 2022) Oxytocin receptor behavioral effects and cell types in the bed nucleus of the stria terminalis. Hormones and Behaviour, 143. p. 105203. ISSN 0018-506X

Macpherson, Tom, Churchland, Anne, Sejnowski, Terry, DiCarlo, James, Kamitani, Yukiyasu, Takahashi, Hidehiko, Hikida, Takatoshi (September 2021) Natural and Artificial Intelligence: A brief introduction to the interplay between AI and neuroscience research. Neural Networks. ISSN 0893-6080

Miller, C. T., Hale, M. E., Okano, H., Okabe, S., Mitra, P. (February 2019) Comparative Principles for Next-Generation Neuroscience. Frontiers in Behavioral Neuroscience, 13. ISSN 1662-5153

Mitra, Partha, Mezias, Chris, Huo, Bingxing, Bota, Mihail, Jayakumar, Jaikishan (May 2024) Establishing neuroanatomical correspondences across mouse and marmoset brain structures. Research Square. (Submitted)

Monje, M., Borniger, J., D'Silva, N.J., Deneen, B., Dirks, P.B., Fattahi, F., Frenette, P.S., Garzia, L., Gutmann, D.H., Hanahan, D., Hervey-Jumper, S.L., Hondermarck, H., Hurov, J.B., Kepecs, A., Knox, S.M., Lloyd, A.C., Magnon, C., Saloman, J.L., Segal, R.A., Sloan, E.K., Sun, X., Taylor, M.D., Tracey, K.J., Trotman, L. C., Tuveson, D. A., Wang, T.C., White, R.A., Winkler, F. (April 2020) Roadmap for the Emerging Field of Cancer Neuroscience. Cell, 181 (2). pp. 219-222. ISSN 0092-8674

Nowlan, Alexandra C, Kelahan, Clancy, Shea, Stephen D (February 2022) Multisensory integration of social signals by a pathway from the basal amygdala to the auditory cortex in maternal mice. bioRxiv. (Unpublished)

Pisano, Thomas J, Dhanerawala, Zahra M, Kislin, Mikhail, Bakshinskaya, Dariya, Engel, Esteban A, Hansen, Ethan J, Hoag, Austin T, Lee, Junuk, de Oude, Nina L, Venkataraju, Kannan Umadevi, Verpeut, Jessica L, Hoebeek, Freek E, Richardson, Ben D, Boele, Henk-Jan, Wang, Samuel S-H (September 2021) Homologous organization of cerebellar pathways to sensory, motor, and associative forebrain. Cell reports, 36 (12). p. 109721. ISSN 2211-1247

Redish, A David, Kepecs, Adam, Anderson, Lisa M, Calvin, Olivia L, Grissom, Nicola M, Haynos, Ann F, Heilbronner, Sarah R, Herman, Alexander B, Jacob, Suma, Ma, Sisi, Vilares, Iris, Vinogradov, Sophia, Walters, Cody J, Widge, Alik S, Zick, Jennifer L, Zilverstand, Anna (February 2022) Computational validity: using computation to translate behaviours across species. Philosophical Transactions of the Royal Society B: Biological Sciences, 377 (1844). p. 20200525. ISSN 0962-8436

Richards, Blake, Tsao, Doris, Zador, Anthony (July 2022) The application of artificial intelligence to biology and neuroscience. Cell, 185 (15). pp. 2640-2643. ISSN 0092-8674

Sharma, Ashika, Jayakumar, Jaikishan, Mitra, Partha P, Chakraborti, Sutanu, Kumar, P Sreenivasa (June 2021) Application of Supervised Machine Learning to Extract Brain Connectivity Information from Neuroscience Research Articles. Interdisciplinary Sciences: Computational Life Sciences. ISSN 1913-2751

Shi, Yan-Liang, Steinmetz, Nicholas A, Moore, Tirin, Boahen, Kwabena, Engel, Tatiana A (January 2022) Cortical state dynamics and selective attention define the spatial pattern of correlated variability in neocortex. Nature Communications, 13 (1). p. 44. ISSN 2041-1723

Silva, Talita M, Borniger, Jeremy C, Alves, Michele Joana, Alzate Correa, Diego, Zhao, Jing, Fadda, Paolo, Toland, Amanda Ewart, Takakura, Ana C, Moreira, Thiago S, Czeisler, Catherine M, Otero, José Javier (April 2021) Machine learning approaches reveal subtle differences in breathing and sleep fragmentation in Phox2b-derived astrocytes ablated mice. Journal of Neurophysiology, 125 (4). pp. 1164-1179. ISSN 0022-3077

Smiley, Kristina O, Munley, Kathleen M, Aghi, Krisha, Lipshutz, Sara E, Patton, Tessa M, Pradhan, Devaleena S, Solomon-Lane, Tessa K, Sun, Simón ED (November 2023) Sex diversity in the 21st century: Concepts, frameworks, and approaches for the future of neuroendocrinology. Hormones and Behaviour, 157. p. 105445. ISSN 0018-506X

Tollkuhn, Jessica (May 2024) Parental-care puzzle in mice solved by thinking outside the brain. Nature. ISSN 0028-0836

Valentino, Rita J, Guyenet, Patrice, Hou, Xun Helen, Herman, Melissa (November 2017) Central Network Dynamics Regulating Visceral and Humoral Functions. The Journal of Neuroscience, 37 (45). pp. 10848-10854. ISSN 0270-6474

Vogelstein, Joshua T, Amunts, Katrin, Andreou, Andreas, Angelaki, Dora, Ascoli, Giorgio, Bargmann, Cori, Burns, Randal, Cali, Corrado, Chance, Frances, Chun, Miyoung, Church, George, Cline, Hollis, Coleman, Todd, Rochefoucauld, Stephanie de La, Denk, Winfried, Elgoyhen, Ana Belen, Cummings, Ralph Etienne, Evans, Alan, Harris, Kenneth, Hausser, Michael, Hill, Sean, Inverso, Samuel, Jackson, Chad, Jain, Viren, Kass, Rob, Kasthuri, Bobby, Kiar, Gregory, Kording, Konrad, Koushika, Sandhya, Krakauer, John, Landis, Story, Layton, Jeff, Luo, Qingming, Marblestone, Adam, Markowitz, David, McArthur, Justin, Mensh, Brett, Milham, Michael, Mitra, Partha, Neskovic, Pedja, Nicolelis, Miguel, O'Brien, Richard, Oliva, Aude, Orban, Gergo, Peng, Hanchuan, Picchini-Schaffer, Alyssa, Picciotto, Marina, Poline, Jean-Baptiste, Poo, Mu-ming, Pouget, Alex, Raghavachari, Sri, Roskams, Jane, Sejnowski, Terry, Sommer, Fritz, Spruston, Nelson, Swanson, Larry, Toga, Arthur, Vogelstein, R Jacob, Yuste, Rafael, Zador, Anthony, Huganir, Richard, Miller, Michael (August 2016) Grand Challenges for Global Brain Sciences. arXiv. (Submitted)

Walker, W. H., Borniger, J. C., Gaudier-Diaz, M. M., Hecmarie Melendez-Fernandez, O., Pascoe, J. L., Courtney DeVries, A., Nelson, R. J. (May 2019) Acute exposure to low-level light at night is sufficient to induce neurological changes and depressive-like behavior. Mol Psychiatry. ISSN 1476-5578

Xavier, Andre M, Lin, Qianyu, Kang, Chris J, Cheadle, Lucas (June 2024) A single-cell transcriptomic atlas of sensory-dependent gene expression in developing mouse visual cortex. bioRxiv. ISSN 2692-8205 (Public Dataset)

Xia, Ruobing, Chen, Xiaomo, Engel, Tatiana A, Moore, Tirin (February 2024) Common and distinct neural mechanisms of attention. Trends in Cognitive Sciences. ISSN 1364-6613

Yin, W., Borniger, J. C., Wang, X., Maguire, S. M., Munselle, M. L., Bezner, K. S., Tesfamariam, H. M., Garcia, A. N., Hofmann, H. A., Nelson, R. J., Gore, A. C. (November 2019) Estradiol treatment improves biological rhythms in a preclinical rat model of menopause. Neurobiol Aging, 83. pp. 1-10. ISSN 1558-1497

Zador, Anthony (February 2024) The origins of COSYNE: Building a community. The Transmitter. ISSN 2770-0976

Zador, Anthony, Escola, Sean, Richards, Blake, Ölveczky, Bence, Bengio, Yoshua, Boahen, Kwabena, Botvinick, Matthew, Chklovskii, Dmitri, Churchland, Anne, Clopath, Claudia, DiCarlo, James, Ganguli, Surya, Hawkins, Jeff, Körding, Konrad, Koulakov, Alexei, LeCun, Yann, Lillicrap, Timothy, Marblestone, Adam, Olshausen, Bruno, Pouget, Alexandre, Savin, Cristina, Sejnowski, Terrence, Simoncelli, Eero, Solla, Sara, Sussillo, David, Tolias, Andreas S, Tsao, Doris (March 2023) Catalyzing next-generation Artificial Intelligence through NeuroAI. Nature Communications, 14 (1). p. 1597. ISSN 2041-1723

Zeraati, R, Buendía, V, Engel, TA, Levina, A (April 2024) Topology-dependent coalescence controls scaling exponents in finite networks. Physical Review Research, 6 (2). ISSN 2643-1564

Zeraati, R, Engel, TA, Levina, A (March 2022) A flexible Bayesian framework for unbiased estimation of timescales. Nature Computational Science, 2 (3). pp. 193-204. ISSN 2662-8457

Zhang, Anqi, Zador, Anthony M (July 2022) Diversity and task-dependence of task representations in V1 during freely-moving decisions. bioRxiv. (Submitted)

Zhang, Xian, Guan, Wuqiang, Yang, Tao, Furlan, Alessandro, Xiao, Xiong, Yu, Kai, An, Xu, Galbavy, William, Ramakrishnan, Charu, Deisseroth, Karl, Ritola, Kimberly, Hantman, Adam, He, Miao, Josh Huang, Z, Li, Bo (October 2021) Genetically identified amygdala-striatal circuits for valence-specific behaviors. Nature Neuroscience, 24. pp. 1586-1600. ISSN 1097-6256

van Kempen, J., Gieselmann, M. A., Boyd, M., Steinmetz, N. A., Moore, T., Engel, T. A., Thiele, A. (December 2020) Top-down coordination of local cortical state during selective attention. Neuron. ISSN 0896-6273

Book Section

Zador, A (April 2024) The Connectome as a DNA Sequencing Problem. In: The Future of the Brain: Essays by the World's Leading Neuroscientists. Princeton University Press, pp. 40-49.

Conference or Workshop Item

Bonda, David, Wulf, Michael, Kepecs, Adam (December 2020) A Functional Circuit for Executive Control. In: Congress of Neurological Surgeons 2020.

Chen, Yushu, Chen, Xiaoyin, Baserdem, Batuhan, Zhan, Huiqing, Li, Yan, Davis, Martin B, Kebschull, Justus M, Zador, Anthony M, Koulakov, Alexei A, Albeanu, Dinu F (2022) High-throughput sequencing of olfactory single neuron projections reveals non-random spatial organization. In: 44th Annual Meeting of the Association-for-Chemoreception-Sciences.

Dussauze, Marie, Gupta, Priyanka, Livneh, Uri, Albeanu, Dinu F (2022) Understanding the neuronal substrates of sensorimotor transformations via a novel closed-loop olfactory task (Smellocator) for mice. In: 44th Annual Meeting of the Association-for-Chemoreception-Sciences.

Gonschorek, Dominic, Hoefling, Larissa, Szatko, Klaudia P, Franke, Katrin, Schubert, Timm, Dunn, Benjamin A, Berens, Philipp, Klindt, David A, Euler, Thomas (2021) Removing Inter-Experimental Variability from Functional Data in Systems Neuroscience. In: Advances in Neural Information Processing Systems.

Klindt, David A, Ecker, Alexander S, Euler, Thomas, Bethge, Matthias (2017) Neural system identification for large populations separating "what" and "where". In: 31st Conference on Neural Information Processing Systems (NIPS 2017), Long Beach, CA.

Samoilova, Khristina, Nakayama, Hirofumi, Pashakhanloo, Farhad, Rinberg, Dmitry, Koulakov, Alexei (2022) The order code in the olfactory bulb: can odorants be represented by the order of glomerular activation? In: 44th Annual Meeting of the Association-for-Chemoreception-Sciences.

Sharma, A, Jayakumar, J, Sankaran, N, Mitra, PP, Chakraborti, S, Sreenivasa Kumar, P (January 2021) ConnExt-BioBERT: Leveraging Transfer Learning for Brain-Connectivity Extraction from Neuroscience Articles. In: International Conference on Brain Informatics.

Trejo, Diego E Hernandez, Ciuparu, Andrei, da Silva, Pedro Garcia, Velasquez, Cristina M, Davis, Martin B, Muresan, Raul C, Albeanu, Dinu F (2022) Cortical-bulbar feedback supports behavioral flexibility during rule-reversal. In: 44th Annual Meeting of the Association-for-Chemoreception-Sciences.

Varol, E, Boussard, J, Dethe, N, Winter, O, Urai, A, Churchland, A, Steinmetz, N, Paninski, L (January 2021) Decentralized motion inference and registration of neuropixel data. In: Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing, 6 Jun 2021 - 11 Jun 2021.

Villar, Pablo S, Araneda, Ricardo C, Albeanu, Dinu F (2022) Basal forebrain gabaergic projections to the olfactory bulb are rapidly recruited by odor encounters in a stimulus specific manner. In: 44th Annual Meeting of the Association-for-Chemoreception-Sciences.

Thesis

Corona, Alberto (March 2023) Sex-dependent neural activity underlying parenting behavior in mice. PhD thesis, Cold Spring Harbor Laboratory.

Gegenhuber, Bruno (April 2022) Epigenomic organization and activation of brain sex differences. PhD thesis, Cold Spring Harbor Laboratory.

Pagliaro, Alexa H (May 2023) A disrupted parvalbumin network state impairs maternal behavior in a mouse model of Rett Syndrome. PhD thesis, Cold Spring Harbor Laboratory.

Pisupati, Sashank (April 2019) A value-based explanation for lapses in perceptual decisions. PhD thesis, Cold Spring Harbor.