Items where Subject is "neurons"

Paper

Ahrens, S., Wu, M., Furlan, A., Hwang, G. R., Paik, R., Li, H., Penzo, M. A., Tollkuhn, J., Li, B. (May 2018) A central extended amygdala circuit that modulates anxiety. J Neurosci, 38 (24). pp. 5567-5583. ISSN 0270-6474

Aizenman, C. D., Akerman, C. J., Jensen, K. R., Cline, H. T. (August 2003) Visually driven regulation of intrinsic neuronal excitability improves stimulus detection in vivo. Neuron, 39 (5). pp. 831-842. ISSN 0896-6273

Aizenman, C. D., Cline, H. T. (April 2007) Enhanced visual activity in vivo forms nascent synapses in the developing retinotectal projection. J Neurophysiol, 97 (4). pp. 2949-57. ISSN 0022-3077 (Print)

Anderson, Erik W, Jin, Ying, Shih, Andrew, Arazi, Arnon, Goodwin, Sara, Roeser, Julien, Furie, Richard A, Aranow, Cynthia, Volpe, Bruce, Diamond, Betty, Mackay, Meggan (November 2022) Associations between circulating interferon and kynurenine/tryptophan pathway metabolites: support for a novel potential mechanism for cognitive dysfunction in SLE. Lupus Science & Medicine, 9 (1). e000808. ISSN 2053-8790

Ango, F., Wu, C., Van der Want, J. J., Wu, P., Schachner, M., Huang, Z. J. (April 2008) Bergmann Glia and the Recognition Molecule CHL1 Organize GABAergic Axons and Direct Innervation of Purkinje Cell Dendrites. PLoS Biology, 6 (4). e103.

Ango, F., di Cristo, G., Higashiyama, H., Bennett, V., Wu, P., Huang, Z. J. (October 2004) Ankyrin-based subcellular gradient of neurofascin, an immunoglobulin family protein, directs GABAergic innervation at purkinje axon initial segment. Cell, 119 (2). pp. 257-72. ISSN 0092-8674 (Print)

Anne, S. L., Govek, E. E., Ayrault, O., Kim, J. H., Zhu, X., Murphy, D. A., Van Aelst, L., Roussel, M. F., Hatten, M. E. (2013) WNT3 inhibits cerebellar granule neuron progenitor proliferation and medulloblastoma formation via MAPK activation. PLoS ONE, 8 (11). ISSN 19326203 (ISSN)

Asari, H., Pearlmutter, B. A., Zador, A. M. (July 2006) Sparse representations for the cocktail party problem. Journal of Neuroscience, 26 (28). pp. 7477-7490. ISSN 02706474

Asari, H., Zador, A. M. (August 2009) Long-Lasting Context Dependence Constrains Neural Encoding Models in Rodent Auditory Cortex. J Neurophysiol, 102 (5). pp. 2638-56.

Ascoli, GA, Huo, BX, Mitra, PP (January 2022) Sizing up whole-brain neuronal tracing. Science Bulletin. ISSN 2095-9273

Azmitia, E. C., Griffin, W. S. T., Marshak, D. R., Vaneldik, L. J., Whitakerazmitia, P. M. (1992) S100 Beta and Serotonin - a Possible Astrocytic-Neuronal Link to Neuropathology of Alzheimers-Disease. Progress in Brain Research, 94. pp. 459-473. ISSN 0079-6123

BRAIN Initiative Cell Census Network (BICCN) (October 2021) A multimodal cell census and atlas of the mammalian primary motor cortex. Nature, 598 (7879). pp. 86-102. ISSN 0028-0836

BRAIN Initiative Cell Census Network (BICCN), Adkins, Ricky, Aldridge, Andrew, Allen, Shona, Ament, Seth, An, Xu, Armand, Ethan, Ascoli, Giorgio, Bakken, Trygve, Bandrowski, Anita, Banerjee, Samik, Barkas, Nikolaos, Bartlett, Anna, Bateup, Helen, Behrens, Margarita, Berens, Philipp, Berg, Jim, Bernabucci, Matteo, Bernaerts, Yves, Bertagnolli, Darren, Biancalani, Tommaso, Boggeman, Lara, Booeshaghi, Sina, Bowman, Ian, Bravo, Héctor Corrada, Cadwell, Cathryn René, Callaway, Edward, Carlin, Benjamin, O'Connor, Carolyn, Carter, Robert, Casper, Tamara, Castanon, Rosa, Castro, Jesus Ramon, Chance, Rebecca, Chatterjee, Apaala, Chen, Huaming, Chun, Jerold, Colantuoni, Carlo, Crabtree, Jonathan, Creasy, Heather, Crichton, Kirsten, Crow, Megan, D'Orazi, Florence, Daigle, Tanya, Dalley, Rachel, Dee, Nick, Degatano, Kylee, Dichter, Benjamin, Diep, Dinh, Ding, Liya, Ding, Song-Lin, Dominguez, Bertha, Dong, Hong-Wei, Dong, Weixiu, Dougherty, Elizabeth, Dudoit, Sandrine, Ecker, Joseph, Eichhorn, Stephen, Fang, Rongxin, Felix, Victor, Feng, Guoping, Feng, Zhao, Fischer, Stephan, Fitzpatrick, Conor, Fong, Olivia, Foster, Nicholas, Galbavy, William, Gee, James, Ghosh, Satrajit, Giglio, Michelle, Gillespie, Thomas, Gillis, Jesse, Goldman, Melissa, Goldy, Jeff, Gong, Hui, Gou, Lin, Grauer, Michael, Halchenko, Yaroslav, Harris, Julie, Hartmanis, Leonard, Hatfield, Joshua, Hawrylycz, Mike, Helba, Brian, Herb, Brian, Hertzano, Ronna, Hintiryan, Houri, Hirokawa, Karla, Hockemeyer, Dirk, Hodge, Rebecca, Hood, Greg, Horwitz, Gregory, Hou, Xiaomeng, Hu, Lijuan, Hu, Qiwen, Huang, Josh, Huo, Bingxing, Ito-Cole, Tony, Jacobs, Matthew, Jia, Xueyan, Jiang, Shengdian, Jiang, Tao, Jiang, Xiaolong, Jin, Xin, Jorstad, Nikolas, Kalmbach, Brian, Kancherla, Jayaram, Keene, Dirk, Kelly, Kathleen, Khajouei, Farzaneh, Kharchenko, Peter, Kim, Gukhan, Ko, Andrew, Kobak, Dmitry, Konwar, Kishori, Kramer, Daniel, Krienen, Fenna, Kroll, Matthew, Kuang, Xiuli, Kuo, Hsien-Chi, Lake, Blue, Larsen, Rachael, Lathia, Kanan, Laturnus, Sophie, Lee, Angus, Lee, Cheng-Ta, Lee, Kuo-Fen, Lein, Ed, Lesnar, Phil, Li, Anan, Li, Xiangning, Li, Xu, Li, Yang Eric, Li, Yaoyao, Li, Yuanyuan, Lim, Byungkook, Linnarsson, Sten, Liu, Christine, Liu, Hanqing, Liu, Lijuan, Lucero, Jacinta, Luo, Chongyuan, Luo, Qingming, Macosko, Evan, Mahurkar, Anup, Martone, Maryann, Matho, Katherine, McCarroll, Steven, McCracken, Carrie, McMillen, Delissa, Miranda, Elanine, Mitra, Partha, Miyazaki, Paula Assakura, Mizrachi, Judith, Mok, Stephanie, Mukamel, Eran, Mulherkar, Shalaka, Nadaf, Naeem, Naeemi, Maitham, Narasimhan, Arun, Nery, Joseph, Ng, Lydia, Ngai, John, Nguyen, Thuc Nghi, Nickel, Lance, Nicovich, Philip, Niu, Sheng-Yong, Ntranos, Vasilis, Nunn, Michael, Olley, Dustin, Orvis, Joshua, Osteen, Julia, Osten, Pavel, Owen, Scott, Pachter, Lior, Palaniswamy, Ramesh, Palmer, Carter, Pang, Yan, Peng, Hanchuan, Pham, Thanh, Pinto-Duarte, Antonio, Plongthongkum, Nongluk, Poirion, Olivier, Preissl, Sebastian, Purdom, Elizabeth, Qu, Lei, Rashid, Mohammad, Reed, Nora, Regev, Aviv, Ren, Bing, Ren, Miao, Rimorin, Christine, Risso, Davide, Rivkin, Angeline, Muñoz-Castañeda, Rodrigo, Romanow, William, Ropelewski, Alexander, Roux de Bézieux, Hector, Ruan, Zongcai, Sandberg, Rickard, Savoia, Steven, Scala, Federico, Schor, Michael, Shen, Elise, Siletti, Kimberly, Smith, Jared, Smith, Kimberly, Somasundaram, Saroja, Song, Yuanyuan, Sorensen, Staci, Stafford, David, Street, Kelly, Sulc, Josef, Sunkin, Susan, Svensson, Valentine, Tan, Pengcheng, Tan, Zheng Huan, Tasic, Bosiljka, Thompson, Carol, Tian, Wei, Tickle, Timothy, Tieu, Michael, Ting, Jonathan, Tolias, Andreas Savas, Torkelson, Amy, Tung, Herman, Vaishnav, Eeshit Dhaval, Van den Berge, Koen, van Velthoven, Cindy TJ, Vanderburg, Charles, Veldman, Matthew, Vu, Minh, Wakeman, Wayne, Wang, Peng, Wang, Quanxin, Wang, Xinxin, Wang, Yimin, Wang, Yun, Welch, Joshua, White, Owen, Williams, Elora, Xie, Fangming, Xie, Peng, Xiong, Feng, Yang, William, Yanny, Anna Marie, Yao, Zizhen, Yin, Lulu, Yu, Yang, Yuan, Jing, Z, Hongkui (October 2020) A multimodal cell census and atlas of the mammalian primary motor cortex. BioRxiv. (Unpublished)

Bakken, Trygve E, Jorstad, Nikolas L, Hu, Qiwen, Lake, Blue B, Tian, Wei, Kalmbach, Brian E, Crow, Megan, Hodge, Rebecca D, Krienen, Fenna M, Sorensen, Staci A, Eggermont, Jeroen, Yao, Zizhen, Aevermann, Brian D, Aldridge, Andrew I, Bartlett, Anna, Bertagnolli, Darren, Casper, Tamara, Castanon, Rosa G, Crichton, Kirsten, Daigle, Tanya L, Dalley, Rachel, Dee, Nick, Dembrow, Nikolai, Diep, Dinh, Ding, Song-Lin, Dong, Weixiu, Fang, Rongxin, Fischer, Stephan, Goldman, Melissa, Goldy, Jeff, Graybuck, Lucas T, Herb, Brian R, Hou, Xiaomeng, Kancherla, Jayaram, Kroll, Matthew, Lathia, Kanan, van Lew, Baldur, Li, Yang Eric, Liu, Christine S, Liu, Hanqing, Lucero, Jacinta D, Mahurkar, Anup, McMillen, Delissa, Miller, Jeremy A, Moussa, Marmar, Nery, Joseph R, Nicovich, Philip R, Niu, Sheng-Yong, Orvis, Joshua, Osteen, Julia K, Owen, Scott, Palmer, Carter R, Pham, Thanh, Plongthongkum, Nongluk, Poirion, Olivier, Reed, Nora M, Rimorin, Christine, Rivkin, Angeline, Romanow, William J, Sedeño-Cortés, Adriana E, Siletti, Kimberly, Somasundaram, Saroja, Sulc, Josef, Tieu, Michael, Torkelson, Amy, Tung, Herman, Wang, Xinxin, Xie, Fangming, Yanny, Anna Marie, Zhang, Renee, Ament, Seth A, Behrens, M Margarita, Bravo, Hector Corrada, Chun, Jerold, Dobin, Alexander, Gillis, Jesse, Hertzano, Ronna, Hof, Patrick R, Höllt, Thomas, Horwitz, Gregory D, Keene, C Dirk, Kharchenko, Peter V, Ko, Andrew L, Lelieveldt, Boudewijn P, Luo, Chongyuan, Mukamel, Eran A, Pinto-Duarte, António, Preissl, Sebastian, Regev, Aviv, Ren, Bing, Scheuermann, Richard H, Smith, Kimberly, Spain, William J, White, Owen R, Koch, Christof, Hawrylycz, Michael, Tasic, Bosiljka, Macosko, Evan Z, McCarroll, Steven A, Ting, Jonathan T, Zeng, Hongkui, Zhang, Kun, Feng, Guoping, Ecker, Joseph R, Linnarsson, Sten, Lein, Ed S (October 2021) Comparative cellular analysis of motor cortex in human, marmoset and mouse. Nature, 598 (7879). pp. 111-119. ISSN 0028-0836

Banerjee, A., Marbach, F., Anselmi, F., Koh, M. S., Davis, M. B., Garcia da Silva, P., Delevich, K., Oyibo, H. K., Gupta, P., Li, B., Albeanu, D. F. (July 2015) An Interglomerular Circuit Gates Glomerular Output and Implements Gain Control in the Mouse Olfactory Bulb. Neuron, 87 (1). pp. 193-207. ISSN 0896-6273

Banerjee, Arkarup, Egger, Robert, Long, Michael A (June 2021) Using focal cooling to link neural dynamics and behavior. Neuron. ISSN 0896-6273

Barabási, Dániel L, Bianconi, Ginestra, Bullmore, Ed, Burgess, Mark, Chung, SueYeon, Eliassi-Rad, Tina, George, Dileep, Kovács, István A, Makse, Hernán, Nichols, Thomas E, Papadimitriou, Christos, Sporns, Olaf, Stachenfeld, Kim, Toroczkai, Zoltán, Towlson, Emma K, Zador, Anthony M, Zeng, Hongkui, Barabási, Albert-László, Bernard, Amy, Buzsáki, György (August 2023) Neuroscience Needs Network Science. The Journal of Neuroscience, 43 (34). pp. 5989-5995. ISSN 0270-6474

Beukema, P., Cecil, K. L., Peterson, E., Mann, V. R., Matsushita, M., Takashima, Y., Navlakha, S., Barth, A. L. (June 2018) TrpM8-mediated somatosensation in mouse neocortex. J Comp Neurol, 526 (9). pp. 1444-1456. ISSN 0021-9967

Birbrair, A., Wang, Z. M., Messi, M. L., Enikolopov, G. N. , Delbono, O. (February 2011) Nestin-GFP transgene reveals neural precursor cells in adult skeletal muscle. PLoS ONE, 6 (2). ISSN 19326203 (ISSN)

Birbrair, A., Zhang, T., Wang, Z., Messi, M. L., Enikolopov, G. N., Mintz, A., Delbono, O. (September 2012) Skeletal Muscle Neural Progenitor Cells Exhibit Properties of NG2-Glia. Experimental Cell Research. ISSN 0014-4827

Blot, Antonin, Roth, Morgane M, Gasler, Ioana, Javadzadeh, Mitra, Imhof, Fabia, Hofer, Sonja B (June 2021) Visual intracortical and transthalamic pathways carry distinct information to cortical areas. Neuron, 109 (12). 1996-2008.e6. ISSN 0896-6273

Bohland, J. W., Bullock, D., Guenther, F. H. (April 2010) Neural representations and mechanisms for the performance of simple speech sequences. Journal of Cognitive Neuroscience, 22 (7). pp. 1504-1529.

Bohland, J. W., Wu, C., Barbas, H., Bokil, H., Bota, M., Breiter, H. C., Cline, H. T., Doyle, J. C., Freed, P. J., Greenspan, R. J., Haber, S. N., Hawrylycz, M., Herrera, D. G., Hilgetag, C. C., Huang, Z. J., Jones, A., Jones, E. G., Karten, H. J., Kleinfeld, D., Kotter, R., Lester, H. A., Lin, J. M., Mensh, B. D., Mikula, S., Panksepp, J., Price, J. L., Safdieh, J., Saper, C. B., Schiff, N. D., Schmahmann, J. D., Stillman, B. W., Svoboda, K., Swanson, L. W., Toga, A. W., Van Essen, D. C., Watson, J. D., Mitra, P. P. (March 2009) A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale. PLoS Computational Biology, 5 (3). e1000334. ISSN 1553734X

Bokil, H. S., Andrews, P., Kulkarni, J. E., Mehta, S., Mitra, P. P. (September 2010) Chronux: A platform for analyzing neural signals. Journal of Neuroscience Methods, 10 (Supp 1). pp. 146-151.

Bokil, H. S., Pesaran, B., Andersen, R. A., Mitra, P. P. (August 2006) A method for detection and classification of events in neural activity. IEEE Trans Biomed Eng, 53 (8). pp. 1678-87. ISSN 0018-9294 (Print)

Bokil, H. S., Tchernichovsky, O., Mitra, P. P. (March 2006) Dynamic phenotypes: Time series analysis techniques for characterizing neuronal and behavioral dynamics. Neuroinformatics, 4 (1). pp. 119-128. ISSN 1539-2791

Brecht, M., Fee, M. S., Garaschuk, O., Helmchen, F., Margrie, T. W., Svoboda, K., Osten, P. (October 2004) Novel approaches to monitor and manipulate single neurons in vivo. Journal of Neuroscience, 24 (42). pp. 9223-9227. ISSN 0270-6474

Brennand, K. J., Simone, A., Jou, J., Gelboin-Burkhart, C., Tran, N., Sangar, S., Li, Y., Mu, Y., Chen, G., Yu, D., McCarthy, S. E., Sebat, J., Gage, F. H. (May 2011) Modelling schizophrenia using human induced pluripotent stem cells. Nature, 473 (7346). 221 - 225. ISSN 00280836 (ISSN)

Brody, C. D., Romo, R., Kepecs, A. (2003) Basic mechanisms for graded persistent activity: Discrete attractors, continuous attractors, and dynamic representations. Current Opinion in Neurobiology, 13 (2). pp. 204-211. ISSN 09594388 (ISSN)

Broser, P., Grinevich, V., Osten, P., Sakmann, B., Wallace, D. J. (July 2008) Critical period plasticity of axonal arbors of layer 2/3 pyramidal neurons in rat somatosensory cortex: layer-specific reduction of projections into deprived cortical columns. Cerebral Cortex, 18 (7). pp. 1588-603. ISSN 1047-3211

Broser, P. J., Erdogan, S., Grinevich, V., Osten, P., Sakmann, B., Wallace, D. J. (March 2008) Automated axon length quantification for populations of labelled neurons. Journal of Neuroscience Methods, 169 (1). pp. 43-54. ISSN 0165-0270

Buchanan, JoAnn, da Costa, Nuno Maçarico, Cheadle, Lucas (August 2023) Emerging roles of oligodendrocyte precursor cells in neural circuit development and remodeling. Trends in Neurosciences, 46 (8). pp. 628-639. ISSN 0166-2236

Cantallops, I., Cline, H. T. (May 2008) Rapid activity-dependent delivery of the neurotrophic protein CPG15 to the axon surface of neurons in intact Xenopus tadpoles. Dev Neurobiol, 68 (6). pp. 744-759.

Chalk, M., Masset, P., Gutkin, B., Deneve, S. (June 2017) Sensory noise predicts divisive reshaping of receptive fields. PLoS Comput Biol, 13 (6). e1005582. ISSN 1553-734x

Cheadle, Lucas (May 2023) Neuron-glia communication through bona fide synapses. Nature Reviews Neuroscience. ISSN 1471-003X

Chen, Xiaoyin, Fischer, Stephan, Zhang, Aixin, Gillis, Jesse, Zador, Anthony (2022) Modular cell type organization of cortical areas revealed by in situ sequencing. bioRxiv. (Submitted)

Chen, Yushu, Chen, Xiaoyin, Baserdem, Batuhan, Zhan, Huiqing, Li, Yan, Davis, Martin, Kebschull, Justus, Zador, Anthony, Koulakov, Alexei, Albeanu, Dinu (2021) Wiring logic of the early rodent olfactory system revealed by high-throughput sequencing of single neuron projections. bioRxiv. (Submitted)

Chen, B. E., Lendvai, B., Nimchinsky, E. A., Burbach, B., Fox, K., Svoboda, K. (November 2000) Imaging high-resolution structure of GFP-expressing neurons in neocortex in vivo. Learning & Memory, 7 (6). pp. 433-441. ISSN 1072-0502

Chen, B. L., Chklovskii, D. B. (April 2006) Placement and routing optimization in the brain. Proceedings of the 2006 international symposium on Physical design, 2006. pp. 136-141.

Chen, B. L., Hall, D. H., Chklovskii, D. B. (March 2006) Wiring optimization can relate neuronal structure and function. Proc Natl Acad Sci U S A, 103 (12). pp. 4723-8. ISSN 0027-8424 (Print)

Chen, G., Li, W., Zhang, Q. S. , Regulski, M. R., Sinha, N., Barditch, J., Tully, T. , Krainer, A. R., Zhang, M. Q., Dubnau, J. T. (February 2008) Identification of Synaptic Targets of Drosophila Pumilio. PLoS Computational Biology, 4 (2). e1000026. ISSN 1553734X

Chen, X., Sun, Y. C., Church, G. M., Lee, J. H., Zador, A. M. (February 2018) Efficient in situ barcode sequencing using padlock probe-based BaristaSeq. Nucleic Acids Res, 46 (4). e22. ISSN 0305-1048

Chen, Yushu, Chen, Xiaoyin, Baserdem, Batuhan, Zhan, Huiqing, Li, Yan, Davis, Martin B, Kebschull, Justus M, Zador, Anthony M, Koulakov, Alexei A, Albeanu, Dinu F (October 2022) High-throughput sequencing of single neuron projections reveals spatial organization in the olfactory cortex. Cell, 185 (22). 4117-4134.e28. ISSN 0092-8674

Chevy, Q., Kepecs, A. (February 2018) When Acetylcholine Unlocks Feedback Inhibition in Cortex. Neuron, 97 (3). pp. 481-484. ISSN 0896-6273

Chklovskii, D. B. (September 2004) Synaptic connectivity and neuronal morphology: two sides of the same coin. Neuron, 43 (5). pp. 609-17. ISSN 0896-6273 (Print)

Christodoulou, F., Raible, F., Tomer, R., Simakov, O., Trachana, K., Klaus, S., Snyman, H., Hannon, G. J., Bork, P., Arendt, D. (February 2010) Ancient animal microRNAs and the evolution of tissue identity. Nature, 463 (7284). pp. 1084-1088. ISSN 0028-0836

Churchland, A. K., Kiani, R., Chaudhuri, R., Wang, X. J., Pouget, A., Shadlen, M. N. (February 2011) Variance as a Signature of Neural Computations during Decision Making. Neuron, 69 (4). pp. 818-831.

Cline, H. T., Haas, K. (March 2008) The regulation of dendritic arbor development and plasticity by glutamatergic synaptic input: a review of the synaptotrophic hypothesis. J Physiol, 586 (6). pp. 1509-1517.

Cline, H. T., Wu, G.-Y., Malinow, R. (1996) In vivo development of neuronal structure and function. Cold Spring Harbor Symposia on Quantitative Biology, 61. pp. 95-104. ISSN 00917451 (ISSN)

Corona, Alberto, Choe, Jane, Muñoz-Castañeda, Rodrigo, Osten, Pavel, Shea, Stephen D (July 2023) A circuit from the locus coeruleus to the anterior cingulate cortex modulates offspring interactions in mice. Cell Reports, 42 (7). p. 112771. ISSN 2211-1247

Cowley, Benjamin R, Calhoun, Adam J, Rangarajan, Nivedita, Ireland, Elise, Turner, Maxwell H, Pillow, Jonathan W, Murthy, Mala (May 2024) Mapping model units to visual neurons reveals population code for social behaviour. Nature. ISSN 0028-0836 (Public Dataset)

Cowley, Benjamin R, Calhoun, Adam J, Rangarajan, Nivedita, Turner, Maxwell H, Pillow, Jonathan W, Murthy, Mala (October 2023) One-to-one mapping between deep network units and real neurons uncovers a visual population code for social behavior. bioRxiv. (Public Dataset) (Submitted)

Cowley, Benjamin R, Smith, Matthew A, Kohn, Adam, Yu, Byron M (December 2016) Stimulus-Driven Population Activity Patterns in Macaque Primary Visual Cortex. PLoS Computational Biology, 12 (12). e1005185. ISSN 1553-734X

Cowley, Benjamin R, Snyder, Adam C, Acar, Katerina, Williamson, Ryan C, Yu, Byron M, Smith, Matthew A (November 2020) Slow Drift of Neural Activity as a Signature of Impulsivity in Macaque Visual and Prefrontal Cortex. Neuron, 108 (3). 551-567.e8. ISSN 0896-6273

Cox, C. L., Denk, W., Tank, D. W., Svoboda, K. (August 2000) Action potentials reliably invade axonal arbors of rat neocortical neurons. Proceedings of the National Academy of Sciences of the United States of America, 97 (17). pp. 9724-9728. ISSN 0027-8424

Crow, M., Paul, A., Ballouz, S., Huang, Z. J., Gillis, J. (February 2018) Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor. Nat Commun, 9 (1). p. 884. ISSN 2041-1723

Czeisler, C. M., Silva, T. M., Fair, S. R., Liu, J., Tupal, S., Kaya, B., Cowgill, A., Mahajan, S., Silva, P. E., Wang, Y., Blissett, A. R., Goksel, M., Borniger, J. C., Zhang, N., Fernandes-Junior, S. A., Catacutan, F., Alves, M. J., Nelson, R. J., Sundaresean, V., Rekling, J., Takakura, A. C., Moreira, T. S., Otero, J. J. (April 2019) The role of PHOX2B-derived astrocytes in chemosensory control of breathing and sleep homeostasis. J Physiol, 597 (8). pp. 2225-2251. ISSN 1469-7793

Dasgupta, Sanjoy, Meirovitch, Yaron, Zheng, Xingyu, Bush, Inle, Lichtman, Jeff W, Navlakha, Saket (September 2024) A neural algorithm for computing bipartite matchings. Proceedings of the National Academy of Sciences of the United States of America, 121 (37). e2321032121. ISSN 0027-8424 (Public Dataset)

De Pietri Tonelli, D., Pulvers, J. N., Haffner, C., Murchison, E. P., Hannon, G. J., Huttner, W. B. (2008) miRNAs are essential for survival and differentiation of newborn neurons but not for expansion of neural progenitors during early neurogenesis in the mouse embryonic neocortex. Development, 135 (23). pp. 3911-3921. ISSN 09501991 (ISSN)

DeWeese, M., Zador, A. M. (1998) Asymmetric Dynamics in Optimal Variance Adaptation. Neural Computation, 10 (5). pp. 1179-1202. ISSN 08997667 (ISSN)

DeWeese, M. R., Hromádka, T., Zador, A. M. (November 2005) Reliability and representational bandwidth in the auditory cortex. Neuron, 48 (3). pp. 479-88. ISSN 0896-6273 (Print)

DeWeese, M. R., Wehr, M., Zador, A. M. (August 2003) Binary spiking in auditory cortex. Journal of Neuroscience, 23 (21). pp. 7940-7949. ISSN 0270-6474

DeWeese, M. R., Zador, A. M. (November 2006) Non-Gaussian membrane potential dynamics imply sparse, synchronous activity in auditory cortex. J Neurosci, 26 (47). pp. 12206-18. ISSN 1529-2401 (Electronic)

Devor, Anna, Bandettini, Peter A, Boas, David A, Bower, James M, Buxton, Richard B, Cohen, Lawrence B, Dale, Anders M, Einevoll, Gaute T, Fox, Peter T, Franceschini, Maria Angela, Friston, Karl J, Fujimoto, James G, Geyer, Mark A, Greenberg, Joel H, Halgren, Eric, Hämäläinen, Matti S, Helmchen, Fritjof, Hyman, Bradley T, Jasanoff, Alan, Jernigan, Terry L, Judd, Lewis L, Kim, Seong-Gi, Kleinfeld, David, Kopell, Nancy J, Kutas, Marta, Kwong, Kenneth K, Larkum, Matthew E, Lo, Eng H, Magistretti, Pierre J, Mandeville, Joseph B, Masliah, Eliezer, Mitra, Partha P, Mobley, William C, Moskowitz, Michael A, Nimmerjahn, Axel, Reynolds, John H, Rosen, Bruce R, Salzberg, Brian M, Schaffer, Chris B, Silva, Gabriel A, So, Peter T C., Spitzer, Nicholas C, Tootell, Roger B, Van Essen, David C, Vanduffel, Wim, Vinogradov, Sergei A, Wald, Lawrence L, Wang, Lihong V, Weber, Bruno, Yodh, Arjun G (October 2013) The Challenge of Connecting the Dots in the B.R.A.I.N. Neuron, 80 (2). pp. 270-274. ISSN 0896-6273

Dhawale, A. K., Hagiwara, A., Bhalla, U. S., Murthy, V. N., Albeanu, D. F. (October 2010) Non-redundant odor coding by sister mitral cells revealed by light addressable glomeruli in the mouse. Nature Neuroscience, 13. pp. 1404-12. ISSN 1097-6256

Diaz-Nido, J., Mizuno, K., Nawa, H., Marshak, D. R. (1994) Regulation of protein kinase CK2 isoform expression during rat brain development. Cell Mol Biol Res, 40 (5-6). pp. 581-5. ISSN 0968-8773 (Print)

Dudok, Barna, Szoboszlay, Miklos, Paul, Anirban, Klein, Peter M, Liao, Zhenrui, Hwaun, Ernie, Szabo, Gergely G, Geiller, Tristan, Vancura, Bert, Wang, Bor-Shuen, McKenzie, Sam, Homidan, Jesslyn, Klaver, Lianne MF, English, Daniel F, Huang, Z Josh, Buzsáki, György, Losonczy, Attila, Soltesz, Ivan (October 2021) Recruitment and inhibitory action of hippocampal axo-axonic cells during behavior. Neuron. ISSN 0896-6273

Dumitriu, D., Cossart, R., Huang, Z. J., Yuste, R. (January 2007) Correlation between axonal morphologies and synaptic input kinetics of interneurons from mouse visual cortex. Cerebral Cortex, 17 (1). pp. 81-91. ISSN 1047-3211

Dvorkin, Roman, Shea, Stephen D (February 2022) Precise and pervasive phasic bursting in locus coeruleus during maternal behavior in mice. The Journal of Neuroscience. ISSN 0270-6474

Eckmeier, D., Shea, S. D. (November 2014) Noradrenergic plasticity of olfactory sensory neuron inputs to the main olfactory bulb. Journal of Neuroscience, 34 (46). pp. 15234-43. ISSN 0270-6474

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Zito, K., Murthy, V. N. (January 2002) Dendritic spines. Current Biology, 12 (1). R5-R5. ISSN 0960-9822

de Sevilla, D. F., Núñez, A., Borde, M., Malinow, R., Buño, W. (2008) Cholinergic-mediated IP3-ereceptor activation induces long-lasting synaptic enhancement in CA1 pyramidal neurons. Journal of Neuroscience, 28 (6). pp. 1469-1478. ISSN 0270-6474

deCharms, R. C., Zador, A. M. (2000) Neural representation and the cortical code. Annual Review of Neuroscience, 23. 613-+. ISSN 0147-006X

Book Section

Blair, H. T., Tinkelman, A., Moita, M. A. P., LeDoux, J. E. (2003) Associative plasticity in neurons of the lateral amygdala during auditory fear conditioning. In: Amygdala in Brain Function: Bacic and Clinical Approaches. Annals of the New York Academy of Sciences, 985 . New York Academy of Sciences, New York, pp. 485-487. ISBN 0077-8923

Cazakoff, BN, Shea, SD (January 2015) Simultaneous collection of in vivo functional and anatomical data from individual neurons in awake mice. In: Neural Tracing Methods. UNSPECIFIED, pp. 85-99.

Kepecs, A., Ragachavari, S. (2002) 3 State Neurons for Contextual Processing. In: Advances in Neural Information Processing Systems 14: Proceedings of the 2001 Conference. MIT Press, pp. 229-236. ISBN 9780262042062

Malinow, R., Hayashi, Y., Maletic-Savatic, M., Zaman, S. H., Poncer, J-C, Shi, S. H., Esteban, J. A. (1999) Introduction of green fluorescent protein into hippocampal neurons through viral infection. In: Imaging neurons : a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. ISBN 0879695420

Monograph

Wilbrecht, L., Kirn, J. R. (June 2004) Neuron addition and loss in the song system: regulation and function. Documentation. NY Academy of Sciences.

Conference or Workshop Item

Albeanu, Dinu F, Koh, Mathew, Anselmi, Francesca, Banerjee, Arkarup, Sadhu, Sai Teja, Villar, Pablo, Chae, Honggoo (2022) Axially independent optical control and readout of neuronal circuit activity in the olfactory bulb. In: UNSPECIFIED.

Albeanu, Dinu F, Soucy, Edward, Murthy, Venkatesh N (October 2008) Olfactory Sensory Axons Expressing Different Receptors Converge on Individual Glomeruli in Mice Lacking Olfactory Marker Protein. In: 15th International Symposium on Olfaction and Taste.

Anderson, K., Koseki, H., Skarnes, W., Shen, M. (October 2010) MOUSE DEVELOPMENT,GENETICS & GENOMICS. In: 2010 meeting on MOUSE DEVELOPMENT,GENETICS & GENOMICS, October 26–October 30, 2010, Cold Spring Harbor Laboratory.

Davis, G., Kolodkin, A., Mason, C. (September 2010) AXON GUIDANCE, SYNAPTIC PLASTICITY & REGENERATION. In: 2010 Meeting of AXON GUIDANCE, SYNAPTIC PLASTICITY & REGENERATION, September 21–September 25, 2010, Cold Spring Harbor Laboratory.

Wu, Yuan-Ting, Bennett, Hannah, Chon, URee, Vanselow, Daniel, Zhang, Qingguang, Munoz-Castaneda, Rodrigo, Cheng, Keith, Osten, Pavel, Drew, Patrick, Kim, Yongsoo (2022) Quantitative relationship between the cerebrovascular network and neuronal cell types in mice. In: BRAIN and BRAIN-PET 2022.

Zador, A. M., Pearlmutter, B. A. (1996) VC dimension of an integrate-and-fire neuron model. In: Proceedings of the 9th Annual Conference on Computational Learning Theory.

Thesis

Asari, H. (2007) Auditory System Characterization. PhD thesis, Cold Spring Harbor Laboratory.

Chiu, S. L. (July 2008) The role of insulin receptor in the development of neuronal structure and function. PhD thesis, Cold Spring Harbor Laboratory.

Engel, Tatiana (2007) Firing statistics in neurons as non-Markovian first passage time problem. PhD thesis, Humboldt-Universität zu Berlin, Mathematisch-Naturwissenschaftliche Fakultät I.

Harris, Benjamin D (October 2021) Atlas level scRNAseq analysis reveals the functional landscape of cell types. PhD thesis, Cold Spring Harbor Laboratory.

Werner, Jonathan M (December 2023) Transcriptomic approaches for investigating developmental lineage: exploiting the X-chromosome as a marker for lineage specification and quantifying the lineage fidelity of neural organoid systems. PhD thesis, Cold Spring Harbor Laboratory.

Video

Enikolopov, G. N. (November 2011) Talk from Grigori Enikolopov at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Kepecs, A. (November 2011) Talk from Adam Kepecs at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Mitra, P. P. (November 2011) Talk from Partha Mitra at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Dataset

Churchland, A. K., Musall, Simon, Kaufman, Matthew T., Juavinett, A. L., Gluf, S. (October 2019) Dataset from: Single-trial neural dynamics are dominated by richly varied movements. [Dataset]

Juavinett, A. L., Bekheet, G., Churchland, A. K. (August 2019) Chronically-implanted Neuropixels probes enable high yield recordings in freely moving mice: dataset. [Dataset]

Najafi, F., Elsayed, G. F., Pnevmatikakis, E., Cunningham, J. P., Churchland, A. K. (2018) Datasets from "Najafi, Farzaneh and Elsayed, Gamaleldin F and Pnevmatikakis, Eftychios and Cunningham, John P and Churchland, Anne K (2018) Inhibitory and excitatory populations in parietal cortex are equally selective for decision outcome in both novices and experts. [Dataset] (In Press)

Najafi, Farzaneh, Elsayed, Gamaleldin F, Cao, Robin, Pnevmatikakis, Eftychios, Latham, Peter E, Cunningham, John P, Churchland, Anne K (February 2019) Dataset from "Farzaneh Najafi, Gamaleldin F Elsayed, Robin Cao, Eftychios Pnevmatikakis, Peter E. Latham, John P Cunningham, Anne K Churchland (bioRxiv, 2018); Excitatory and inhibitory subnetworks are equally selective during decision-making and emerge simultaneously during learning.”. [Dataset] (Unpublished)

Raposo, D., Kaufman, M. T., Churchland, A. K. (2014) Datasets from "Raposo, David and Kaufman, Matthew T. and Churchland, Anne K. (2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience". [Dataset]

Raposo, D., Kaufman, M. T., Churchland, A. K. (2014) Matlab code for running the PAIRS and Variance Alignment Analyses from "Raposo, David and Kaufman, Matthew T. and Churchland, Anne K. (2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience". [Dataset]