Items where Subject is "mammal"

A

Abdeladim, L., Matho, K. S., Clavreul, S., Mahou, P., Sintes, J. M., Solinas, X., Arganda-Carreras, I., Turney, S. G., Lichtman, J. W., Chessel, A., Bemelmans, A. P., Loulier, K., Supatto, W., Livet, J., Beaurepaire, E. (April 2019) Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy. Nat Commun, 10 (1). p. 1662. ISSN 2041-1723

Abel, Haley J, Larson, David E, Regier, Allison A, Chiang, Colby, Das, Indraniel, Kanchi, Krishna L, Layer, Ryan M, Neale, Benjamin M, Salerno, William J, Reeves, Catherine, Buyske, Steven, NHGRI Centers for Common Disease Genomics, Matise, Tara C, Muzny, Donna M, Zody, Michael C, Lander, Eric S, Dutcher, Susan K, Stitziel, Nathan O, Hall, Ira M (July 2020) Mapping and characterization of structural variation in 17,795 human genomes. Nature, 583 (7814). pp. 83-89. ISSN 0028-0836

Abou-Alfa, Ghassan K, Norton, Larry, Global Oncology Medical Diplomacy Working Group (2023) Global Oncology Medical Diplomacy Working Group Inaugural Meeting: Defining Worldwide Barriers to Germline Genomics in Cancer Prevention and Management. Annals of Global Health, 89 (1). p. 16. ISSN 2214-9996

Abramson, Harold Alexander (1956) Lysergic acid diethylamide (LSD-25): XIX. As an adjunct to brief psychotherapy, with special reference to ego enhancement. Journal of Psychology: Interdisciplinary and Applied, 41. pp. 199-229.

Abramson, Harold Alexander, Furchgott, Robert F., Ponder, Eric (March 1939) The electrophoretic mobility of rabbit erythrocytes and ghosts. J Gen Physiol., 22 (4). pp. 545-553.

Abulwerdi, F. A., Xu, W., Ageeli, A. A., Yonkunas, M. J., Arun, G., Nam, H., Schneekloth, J. S., Dayie, T. K., Spector, D., Baird, N., Le Grice, S. F. J. (February 2019) Selective Small-Molecule Targeting of a Triple Helix Encoded by the Long Noncoding RNA, MALAT1. ACS Chemical Biology, 14 (2). pp. 223-235. ISSN 15548929 (ISSN) (Public Dataset)

Adrover, Jose M, Carrau, Lucia, Daßler-Plenker, Juliane, Bram, Yaron, Chandar, Vasuretha, Houghton, Sean, Redmond, David, Merrill, Joseph R, Shevik, Margaret, tenOever, Benjamin R, Lyons, Scott K, Schwartz, Robert E, Egeblad, Mikala (February 2022) Disulfiram inhibits neutrophil extracellular trap formation protecting rodents from acute lung injury and SARS-CoV-2 infection. JCI Insight. ISSN 2379-3708

Aggarwal, Disha, Russo, Suzanne, Naik, Payal, Bhatia, Sonam, Spector, David L (February 2023) Establishment and Culture of Patient-Derived Breast Organoids. Journal of Visualized Experiments (192). ISSN 1940-087X

Ahrens, S., Wu, M., Furlan, A., Hwang, G. R., Paik, R., Li, H., Penzo, M. A., Tollkuhn, J., Li, B. (May 2018) A central extended amygdala circuit that modulates anxiety. J Neurosci, 38 (24). pp. 5567-5583. ISSN 0270-6474

Ajiro, Masahiko, Awaya, Tomonari, Kim, Young Jin, Iida, Kei, Denawa, Masatsugu, Tanaka, Nobuo, Kurosawa, Ryo, Matsushima, Shingo, Shibata, Saiko, Sakamoto, Tetsunori, Studer, Rolenz, Krainer, Adrian R, Hagiwara, Masatoshi (July 2021) Therapeutic manipulation of IKBKAP mis-splicing with a small molecule to cure familial dysautonomia. Nature Communications, 12 (1). p. 4507. ISSN 2041-1723

Albeanu, D. F., Provost, A. C., Agarwal, P., Soucy, E. R., Zak, J. D., Murthy, V. N. (November 2018) Olfactory marker protein (OMP) regulates formation and refinement of the olfactory glomerular map. Nat Commun, 9 (1). p. 5073. ISSN 2041-1723

Albrengues, J., Shields, M. A., Ng, D., Park, C. G., Ambrico, A., Poindexter, M. E., Upadhyay, P., Uyeminami, D. L., Pommier, A., Kuttner, V., Bruzas, E., Maiorino, L., Bautista, C., Carmona, E. M., Gimotty, P. A., Fearon, D. T., Chang, K., Lyons, S. K., Pinkerton, K. E., Trotman, L. C., Goldberg, M. S., Yeh, J. T., Egeblad, M. (September 2018) Neutrophil extracellular traps produced during inflammation awaken dormant cancer cells in mice. Science, 361 (6409). ISSN 0036-8075

Alexander, Katherine A, Wang, Xu, Shibata, Maho, Clark, Andrew G, García-García, María J (November 2015) TRIM28 Controls Genomic Imprinting through Distinct Mechanisms during and after Early Genome-wide Reprogramming. Cell Reports, 13 (6). pp. 1194-1205. ISSN 2211-1247

Almeida, Ana S, Fein, Miriam R, Egeblad, Mikala (June 2021) Multi-color Flow Cytometry for Comprehensive Analysis of the Tumor Immune Infiltrate in a Murine Model of Breast Cancer. Bio-protocol, 11 (11). e4012. ISSN 2331-8325

Amaral, Paulo, Carbonell-Sala, Silvia, De La Vega, Francisco M, Faial, Tiago, Frankish, Adam, Gingeras, Thomas, Guigo, Roderic, Harrow, Jennifer L, Hatzigeorgiou, Artemis G, Johnson, Rory, Murphy, Terence D, Pertea, Mihaela, Pruitt, Kim D, Pujar, Shashikant, Takahashi, Hazuki, Ulitsky, Igor, Varabyou, Ales, Wells, Christine A, Yandell, Mark, Carninci, Piero, Salzberg, Steven L (October 2023) The status of the human gene catalogue. Nature, 622 (7981). pp. 41-47. ISSN 0028-0836

Amit, Moran, Anastasaki, Corina, Dantzer, Robert, Demir, Ihsan Ekin, Deneen, Benjamin, Dixon, Karen O, Egeblad, Mikala, Gibson, Erin M, Hervey-Jumper, Shawn L, Hondermarck, Hubert, Magnon, Claire, Monje, Michelle, Na'ara, Shorook, Pan, Yuan, Repasky, Elizabeth A, Scheff, Nicole N, Sloan, Erica K, Talbot, Sebastien, Tracey, Kevin J, Trotman, Lloyd C, Valiente, Manuel, Van Aelst, Linda, Venkataramani, Varun, Venkatesh, Humsa S, Vermeer, Paola D, Winkler, Frank, Wong, Richard J, Gutmann, David H, Borniger, Jeremy C (April 2024) Next Directions in the Neuroscience of Cancers Arising outside the CNS. Cancer Discovery, 14 (4). pp. 669-673. ISSN 2159-8274

Amor, Corina, Fernández-Maestre, Inés, Chowdhury, Saria, Ho, Yu-Jui, Nadella, Sandeep, Graham, Courtenay, Carrasco, Sebastian E, Nnuji-John, Emmanuella, Feucht, Judith, Hinterleitner, Clemens, Barthet, Valentin JA, Boyer, Jacob A, Mezzadra, Riccardo, Wereski, Matthew G, Tuveson, David A, Levine, Ross L, Jones, Lee W, Sadelain, Michel, Lowe, Scott W (September 2023) Prophylactic and long-lasting efficacy of senolytic CAR T cells against age-related metabolic dysfunction. Research Square. (Submitted)

Anderson, C. W., Lewis, J. B. (1980) Amino-Terminal Sequence of Adenovirus Type-2 Proteins - Hexon, Fiber, Component-Ix, and Early Protein 1b-15k. Virology, 104 (1). pp. 27-41.

Aravin, A. A., Bourc'his, D. (April 2008) Small RNA guides for de novo DNA methylation in mammalian germ cells. Genes Dev, 22 (8). pp. 970-5.

Arkell, T. R., Davenport, Charles Benedict (March 1912) Horns in sheep as a typical sex-limited character. Science, 35 (897). pp. 375-377.

Arkell, T. R., Davenport, Charles Benedict (1912) The nature of the inheritance of horns in sheep. Science, 35 (911). p. 927.

Aroca-Crevillén, Alejandra, Hidalgo, Andres, Adrover, Jose M (May 2022) In Vivo Imaging of Circadian NET Formation During Lung Injury by Four-Dimensional Intravital Microscopy. In: Methods in Molecular Biology. Springer US, pp. 285-300. ISBN 9781071622483

Arrazola, M. S., Saquel, C., Catalan, R. J., Barrientos, S. A., Hernandez, D. E., Catenaccio, A., Court, F. A. (May 2019) Axonal degeneration is mediated by necroptosis activation Necroptosis mediates axonal degeneration. J Neurosci, 39 (20). pp. 3832-2844. ISSN 0270-6474

Arrigo, A. P., Suhan, J. P., Welch, W. J. (December 1988) Dynamic changes in the structure and intracellular locale of the mammalian low-molecular-weight heat shock protein. Molecular & Cellular Biology, 8 (12). pp. 5059-71. ISSN 0270-7306

Arrigo, A. P., Tanaka, K., Goldberg, A. L., Welch, W. J. (January 1988) Identity of the 19S 'prosome' particle with the large multifunctional protease complex of mammalian cells (the proteasome). Nature, 331 (6152). pp. 192-4. ISSN 0028-0836

Arteaga, Carlos L, Cleveland, John L, Foti, Margaret, Mesa, Ruben A, Weiner, Louis M, Willman, Cheryl L, Tuveson, David A (September 2023) AACR Cancer Centers Alliance: Fostering Collaboration and Innovation to Advance Lifesaving Scientific Discoveries for Patients. Molecular Cancer Research. OF1-OF3. ISSN 1541-7786

Arun, G., Akhade, V. S., Donakonda, S., Rao, M. R. S. (2012) Mrhl rna, a long noncoding rna, negatively regulates wnt signaling through its protein partner ddx5/p68 in mouse spermatogonial cells. Molecular and Cellular Biology, 32 (15). pp. 3140-3152. ISSN 02707306

Asselbergs, F. A. M., Meulenberg, E., Van Venrooij, W. J., Bloemendal, H. (1980) Preferential Translation of Messenger Rna in a Messenger Rna Dependent Reticulocyte Lysate. European Journal of Biochemistry, 109 (1). pp. 159-166.

Atkins, J. F., Lewis, J. B., Anderson, C. W., Gesteland, R. F. (July 1975) Enhanced differential synthesis of proteins in a mammalian cell-free system by addition of polyamines. J Biol Chem, 250 (14). pp. 5688-95.

Auguste, Yohan SS, Ferro, Austin, Kahng, Jessica A, Xavier, Andre M, Dixon, Jessica R, Vrudhula, Uma, Nichitiu, Anne-Sarah, Rosado, Daniele, Wee, Tse-Luen, Pedmale, Ullas V, Cheadle, Lucas (September 2022) Oligodendrocyte precursor cells engulf synapses during circuit remodeling in mice. Nature Neuroscience. ISSN 1097-6256

Azevedo, H., Ferreira, M., Mascarello, A., Osten, P., Werneck Guimaraes, C. R. (December 2019) The serotonergic and alpha-1 adrenergic receptor modulator ACH-000029 ameliorates anxiety-like behavior in a post-traumatic stress disorder model. Neuropharmacology, 164. p. 107912. ISSN 0028-3908

B

BRAIN Initiative Cell Census Network (BICCN) (October 2021) A multimodal cell census and atlas of the mammalian primary motor cortex. Nature, 598 (7879). pp. 86-102. ISSN 0028-0836

Baker, L. A., Tuveson, D. A. (2019) Generation and Culture of Tumor and Metastatic Organoids from Murine Models of Pancreatic Ductal Adenocarcinoma. Methods Mol Biol, 1882. pp. 117-133. ISSN 1064-3745

Bakken, Trygve E, Jorstad, Nikolas L, Hu, Qiwen, Lake, Blue B, Tian, Wei, Kalmbach, Brian E, Crow, Megan, Hodge, Rebecca D, Krienen, Fenna M, Sorensen, Staci A, Eggermont, Jeroen, Yao, Zizhen, Aevermann, Brian D, Aldridge, Andrew I, Bartlett, Anna, Bertagnolli, Darren, Casper, Tamara, Castanon, Rosa G, Crichton, Kirsten, Daigle, Tanya L, Dalley, Rachel, Dee, Nick, Dembrow, Nikolai, Diep, Dinh, Ding, Song-Lin, Dong, Weixiu, Fang, Rongxin, Fischer, Stephan, Goldman, Melissa, Goldy, Jeff, Graybuck, Lucas T, Herb, Brian R, Hou, Xiaomeng, Kancherla, Jayaram, Kroll, Matthew, Lathia, Kanan, van Lew, Baldur, Li, Yang Eric, Liu, Christine S, Liu, Hanqing, Lucero, Jacinta D, Mahurkar, Anup, McMillen, Delissa, Miller, Jeremy A, Moussa, Marmar, Nery, Joseph R, Nicovich, Philip R, Niu, Sheng-Yong, Orvis, Joshua, Osteen, Julia K, Owen, Scott, Palmer, Carter R, Pham, Thanh, Plongthongkum, Nongluk, Poirion, Olivier, Reed, Nora M, Rimorin, Christine, Rivkin, Angeline, Romanow, William J, Sedeño-Cortés, Adriana E, Siletti, Kimberly, Somasundaram, Saroja, Sulc, Josef, Tieu, Michael, Torkelson, Amy, Tung, Herman, Wang, Xinxin, Xie, Fangming, Yanny, Anna Marie, Zhang, Renee, Ament, Seth A, Behrens, M Margarita, Bravo, Hector Corrada, Chun, Jerold, Dobin, Alexander, Gillis, Jesse, Hertzano, Ronna, Hof, Patrick R, Höllt, Thomas, Horwitz, Gregory D, Keene, C Dirk, Kharchenko, Peter V, Ko, Andrew L, Lelieveldt, Boudewijn P, Luo, Chongyuan, Mukamel, Eran A, Pinto-Duarte, António, Preissl, Sebastian, Regev, Aviv, Ren, Bing, Scheuermann, Richard H, Smith, Kimberly, Spain, William J, White, Owen R, Koch, Christof, Hawrylycz, Michael, Tasic, Bosiljka, Macosko, Evan Z, McCarroll, Steven A, Ting, Jonathan T, Zeng, Hongkui, Zhang, Kun, Feng, Guoping, Ecker, Joseph R, Linnarsson, Sten, Lein, Ed S (October 2021) Comparative cellular analysis of motor cortex in human, marmoset and mouse. Nature, 598 (7879). pp. 111-119. ISSN 0028-0836

Balasooriya, Gayan I, Spector, David L (October 2022) Allele-specific differential regulation of monoallelically expressed autosomal genes in the cardiac lineage. Nature Communications, 13 (1). p. 5984. ISSN 2041-1723

Ballouz, S., Dobin, A., Gillis, J. A. (August 2019) Is it time to change the reference genome? Genome Biol, 20 (1). ISSN 1474-7596

Banerjee, Arkarup, Chen, Feng, Druckmann, Shaul, Long, Michael A (January 2024) Temporal scaling of motor cortical dynamics reveals hierarchical control of vocal production. Nature Neuroscience. ISSN 1097-6256

Banerjee, Arkarup, Isko, Emily, Harpole, Clifford, Zheng, Xiaoyue, Zhan, Huiqing, Davis, Martin, Zador, Anthony (September 2024) Selective expansion of motor cortical projections in the evolution of vocal novelty. bioRxiv. ISSN 2692-8205 (Submitted)

Banerjee, Arkarup, Phelps, Steven M, Long, Michael A (March 2019) Singing Mice. Current Biology, 29 (6). R190-R191. ISSN 0960-9822

Bar-Sagi, D. (1995) Mammalian cell microinjection assay. Methods Enzymol, 255. pp. 436-42. ISSN 0076-6879 (Print)

Barriga, Francisco M, Tsanov, Kaloyan M, Ho, Yu-Jui, Sohail, Noor, Zhang, Amy, Baslan, Timour, Wuest, Alexandra N, Del Priore, Isabella, Meškauskaitė, Brigita, Livshits, Geulah, Alonso-Curbelo, Direna, Simon, Janelle, Chaves-Perez, Almudena, Bar-Sagi, Dafna, Iacobuzio-Donahue, Christine A, Notta, Faiyaz, Chaligne, Ronan, Sharma, Roshan, Pe'er, Dana, Lowe, Scott W (November 2022) MACHETE identifies interferon-encompassing chromosome 9p21.3 deletions as mediators of immune evasion and metastasis. Nature Cancer, 3 (11). pp. 1367-1385. ISSN 2662-1347

Barth, N. D., Subiros-Funosas, R., Mendive-Tapia, L., Duffin, R., Shields, M. A., Cartwright, J. A., Henriques, S. T., Sot, J., Goñi, F. M., Lavilla, R., Marwick, J. A., Vermeren, S., Rossi, A. G., Egeblad, M., Dransfield, I., Vendrell, M. (August 2020) A fluorogenic cyclic peptide for imaging and quantification of drug-induced apoptosis. Nat Commun, 11 (1). p. 4027. ISSN 2041-1723

Bates, Robert Wesley, Riddle, Oscar, Lahr, Ernest L. (September 1935) Concurrent assay of three hormones from anterior pituitaries of seven age and sex groups of cattle (Abstract). The American Journal of Physiology, 113 (1). pp. 8-9.

Bates, Robert Wesley, Riddle, Oscar, Lahr, Ernest L. (October 1935) An assay of three hormones present in the anterior pituitaries of seven types of cattle classified for age, sex, and stage of reproduction. The American Journal of Physiology, 113 (2). pp. 259-264.

Baum, Alina, Ajithdoss, Dharani, Copin, Richard, Zhou, Anbo, Lanza, Kathryn, Negron, Nicole, Ni, Min, Wei, Yi, Mohammadi, Kusha, Musser, Bret, Atwal, Gurinder S, Oyejide, Adelekan, Goez-Gazi, Yenny, Dutton, John, Clemmons, Elizabeth, Staples, Hilary M, Bartley, Carmen, Klaffke, Benjamin, Alfson, Kendra, Gazi, Michal, Gonzalez, Olga, Dick, Edward, Carrion, Ricardo, Pessaint, Laurent, Porto, Maciel, Cook, Anthony, Brown, Renita, Ali, Vaneesha, Greenhouse, Jack, Taylor, Tammy, Andersen, Hanne, Lewis, Mark G, Stahl, Neil, Murphy, Andrew J, Yancopoulos, George D, Kyratsous, Christos A (November 2020) REGN-COV2 antibodies prevent and treat SARS-CoV-2 infection in rhesus macaques and hamsters. Science, 370 (6520). pp. 1110-1115. ISSN 0036-8075

Bell, C. C., Fennell, K. A., Chan, Y. C., Rambow, F., Yeung, M. M., Vassiliadis, D., Lara, L., Yeh, P., Martelotto, L. G., Rogiers, A., Kremer, B. E., Barbash, O., Mohammad, H. P., Johanson, T. M., Burr, M. L., Dhar, A., Karpinich, N., Tian, L., Tyler, D. S., MacPherson, L., Shi, J., Pinnawala, N., Yew Fong, C., Papenfuss, A. T., Grimmond, S. M., Dawson, S. J., Allan, R. S., Kruger, R. G., Vakoc, C. R., Goode, D. L., Naik, S. H., Gilan, O., Lam, E. Y. N., Marine, J. C., Prinjha, R. K., Dawson, M. A. (June 2019) Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia. Nat Commun, 10 (1). p. 2723. ISSN 2041-1723

Bencze, G., Bencze, S., Rivera, K. D., Watson, J. D., Orfi, L., Tonks, N. K., Pappin, D. J. (August 2020) Mito-oncology agent: fermented extract suppresses the Warburg effect, restores oxidative mitochondrial activity, and inhibits in vivo tumor growth. Sci Rep, 10 (1). p. 14174. ISSN 2045-2322

Benitez, Asiel A, Khalil-Agüero, Sara, Nandakumar, Anjali, Gupta, Namita T, Zhang, Wen, Atwal, Gurinder S, Murphy, Andrew J, Sleeman, Matthew A, Haxhinasto, Sokol (July 2020) Absence of central tolerance in Aire-deficient mice synergizes with immune-checkpoint inhibition to enhance antitumor responses. Communications Biology, 3 (1). p. 355. ISSN 2399-3642

Bergerson, R. J., Collier, L. S., Sarver, A. L., Been, R. A., Lugthart, S., Diers, M. D., Zuber, J., Rappaport, A. R., Nixon, M. J., Silverstein, K. A. T., Fan, D. H., Lamblin, A. F. J., Wolff, L., Kersey, J. H., Delwel, R., Lowe, S. W., O'Sullivan, M. G., Kogan, S. C., Adams, D. J., Largaespada, D. A. (May 2012) An insertional mutagenesis screen identifies genes that cooperate with Mll-AF9 in a murine leukemogenesis model. Blood, 119 (19). pp. 4512-4523. ISSN 0006-4971

Berlow, N. E., Rikhi, R., Geltzeiler, M., Abraham, J., Svalina, M. N., Davis, L. E., Wise, E., Mancini, M., Noujaim, J., Mansoor, A., Quist, M. J., Matlock, K. L., Goros, M. W., Hernandez, B. S., Doung, Y. C., Thway, K., Tsukahara, T., Nishio, J., Huang, E. T., Airhart, S., Bult, C. J., Gandour-Edwards, R., Maki, R. G., Jones, R. L., Michalek, J. E., Milovancev, M., Ghosh, S., Pal, R., Keller, C. (June 2019) Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma. BMC Cancer, 19 (1). p. 593. ISSN 1471-2407 (Public Dataset)

Bernstein, E., Kim, S. Y., Carmell, M. A., Murchison, E. P., Alcorn, H., Li, M. Z., Mills, A. A., Elledge, S. J., Anderson, K. V., Hannon, G. J. (2003) Dicer is essential for mouse development. Nature Genetics, 35 (3). pp. 215-217. ISSN 10614036 (ISSN)

Bernstein, Maurice H. (1956) Observations on the structure of deoxyribonucleoprotein gels. Proceedings of the National Academy of Sciences, 42 (10). pp. 703-707.

Beukema, P., Cecil, K. L., Peterson, E., Mann, V. R., Matsushita, M., Takashima, Y., Navlakha, S., Barth, A. L. (June 2018) TrpM8-mediated somatosensation in mouse neocortex. J Comp Neurol, 526 (9). pp. 1444-1456. ISSN 0021-9967

Bharathy, N., Berlow, N. E., Wang, E., Abraham, J., Settelmeyer, T. P., Hooper, J. E., Svalina, M. N., Bajwa, Z., Goros, M. W., Hernandez, B. S., Wolff, J. E., Pal, R., Davies, A. M., Ashok, A., Bushby, D., Mancini, M., Noakes, C., Goodwin, N. C., Ordentlich, P., Keck, J., Hawkins, D. S., Rudzinski, E. R., Mansoor, A., Perkins, T. J., Vakoc, C. R., Michalek, J. E., Keller, C. (May 2019) Preclinical rationale for entinostat in embryonal rhabdomyosarcoma. Skelet Muscle, 9 (1). p. 12. ISSN 2044-5040

Bharathy, N., Berlow, N. E., Wang, E., Abraham, J., Settelmeyer, T. P., Hooper, J. E., Svalina, M. N., Ishikawa, Y., Zientek, K., Bajwa, Z., Goros, M. W., Hernandez, B. S., Wolff, J. E., Rudek, M. A., Xu, L., Anders, N. M., Pal, R., Harrold, A. P., Davies, A. M., Ashok, A., Bushby, D., Mancini, M., Noakes, C., Goodwin, N. C., Ordentlich, P., Keck, J., Hawkins, D. S., Rudzinski, E. R., Chatterjee, B., Bachinger, H. P., Barr, F. G., Liddle, J., Garcia, B. A., Mansoor, A., Perkins, T. J., Vakoc, C. R., Michalek, J. E., Keller, C. (November 2018) The HDAC3-SMARCA4-miR-27a axis promotes expression of the PAX3:FOXO1 fusion oncogene in rhabdomyosarcoma. Sci Signal, 11 (557). ISSN 1945-0877

Bieler, M, Hussain, S, Daaland, ESB, Mirrione, M. M., Henn, F. A., Davanger, S (April 2021) Changes in concentrations of NMDA receptor subunit GluN2B, Arc and syntaxin-1 in dorsal hippocampus Schaffer collateral synapses in a rat learned helplessness model of depression. The Journal of Comparative Neurology, 529 (12). pp. 3194-3205.

Biffi, G., Oni, T. E., Spielman, B., Hao, Y., Elyada, E., Park, Y., Preall, J., Tuveson, D. A. (October 2018) IL-1-induced JAK/STAT signaling is antagonized by TGF-beta to shape CAF heterogeneity in pancreatic ductal adenocarcinoma. Cancer Discov, 9 (2). pp. 282-301. ISSN 2159-8274

Biton, M., Haber, A. L., Rogel, N., Burgin, G., Beyaz, S., Schnell, A., Ashenberg, O., Su, C. W., Smillie, C., Shekhar, K., Chen, Z., Wu, C., Ordovas-Montanes, J., Alvarez, D., Herbst, R. H., Zhang, M., Tirosh, I., Dionne, D., Nguyen, L. T., Xifaras, M. E., Shalek, A. K., von Andrian, U. H., Graham, D. B., Rozenblatt-Rosen, O., Shi, H. N., Kuchroo, V., Yilmaz, O. H., Regev, A., Xavier, R. J. (October 2018) T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation. Cell, 175 (5). pp. 1307-1320. ISSN 0092-8674

Blakeslee, Albert Francis, Gortner, Ross Aiken (March 1915) Reaction of rabbits to intravenous injections of mould spores. The Biochemical Bulletin, 4 (13). pp. 45-51.

Blose, S. H. (1981) The Distribution of 10nm Filaments and Microtubules in Endothelial-Cells During Mitosis - Double-Label Immunofluorescence Study. Cell Motility and the Cytoskeleton, 1 (4). pp. 417-431.

Blose, S. H., Lin, J. J. C. (1981) Vimentin-10nm Filaments Decorated with a Monoclonal-Antibody That Recognizes a Common Determinant on Vimentin and Tropomyosin. Journal of Cell Biology, 91 (2). A239-A239.

Blose, S. H., Matsumura, F., Lin, J. J. C. (1981) Structure of Vimentin 10-Nm Filaments Probed with a Monoclonal-Antibody That Recognizes a Common Antigenic Determinant on Vimentin and Tropomyosin. In: Cold Spring Harbor Symposia on Quantitative Biology XLVI: Organization of the Cytoplasm, Cold Spring Harbor, NY.

Blose, S. H., Meltzer, D. I. (1981) Visualization of the 10-Nm Filament Vimentin Rings in Vascular Endothelial-Cells Insitu - Close Resemblance to Vimentin Cytoskeletons Found in Monolayers Invitro. Experimental Cell Research, 135 (2). pp. 299-309.

Blot, Antonin, Roth, Morgane M, Gasler, Ioana, Javadzadeh, Mitra, Imhof, Fabia, Hofer, Sonja B (June 2021) Visual intracortical and transthalamic pathways carry distinct information to cortical areas. Neuron, 109 (12). 1996-2008.e6. ISSN 0896-6273

Boato, Francesco, Guan, Xiaofei, Zhu, Yanjie, Ryu, Youngjae, Voutounou, Mariel, Rynne, Christopher, Freschlin, Chase R, Zumbo, Paul, Betel, Doron, Matho, Katie, Makarov, Sergey N, Wu, Zhuhao, Son, Young-Jin, Nummenmaa, Aapo, Huang, Josh Z, Edwards, Dylan J, Zhong, Jian (January 2023) Activation of MAP2K signaling by genetic engineering or HF-rTMS promotes corticospinal axon sprouting and functional regeneration. Science Translational Medicine, 15 (677). eabq6885. ISSN 1946-6234 (Public Dataset)

Bodineau, Clément, Tomé, Mercedes, Courtois, Sarah, Costa, Ana SH, Sciacovelli, Marco, Rousseau, Benoit, Richard, Elodie, Vacher, Pierre, Parejo-Pérez, Carlos, Bessede, Emilie, Varon, Christine, Soubeyran, Pierre, Frezza, Christian, Murdoch, Piedad Del Socorro, Villar, Victor H, Durán, Raúl V (August 2021) Two parallel pathways connect glutamine metabolism and mTORC1 activity to regulate glutamoptosis. Nature Communications, 12 (1). p. 4814. ISSN 2041-1723

Borniger, J. C., Ungerleider, K., Zhang, N., Karelina, K., Magalang, U. J., Weil, Z. M. (April 2018) Repetitive Brain Injury of Juvenile Mice Impairs Environmental Enrichment-Induced Modulation of REM Sleep in Adulthood. Neuroscience, 375. pp. 74-83. ISSN 1873-7544 (Electronic)0306-4522 (Linking)

Bott, A. J., Shen, J., Tonelli, C., Zhan, L., Sivaram, N., Jiang, Y. P., Yu, X., Bhatt, V., Chiles, E., Zhong, H., Maimouni, S., Dai, W., Velasquez, S., Pan, J. A., Muthalagu, N., Morton, J., Anthony, T. G., Feng, H., Lamers, W. H., Murphy, D. J., Guo, J. Y., Jin, J., Crawford, H. C., Zhang, L., White, E., Lin, R. Z., Su, X., Tuveson, D. A., Zong, W. X. (October 2019) Glutamine Anabolism Plays a Critical Role in Pancreatic Cancer by Coupling Carbon and Nitrogen Metabolism. Cell Rep, 29 (5). 1287-1298.e6.

Boutchueng-Djidjou, M., Belleau, P., Bilodeau, N., Fortier, S., Bourassa, S., Droit, A., Elowe, S., Faure, R. L. (October 2018) A type 2 diabetes disease module with a high collective influence for Cdk2 and PTPLAD1 is localized in endosomes. PLoS One, 13 (10). e0205180. ISSN 1932-6203

Brown, Fiona C, Still, Eric, Koche, Richard P, Yim, Christina Y, Takao, Sumiko, Cifani, Paolo, Reed, Casie, Gunasekera, Shehana, Ficarro, Scott B, Romanienko, Peter, Mark, Willie, McCarthy, Craig, de Stanchina, Elisa, Gonen, Mithat, Seshan, Venkatraman, Bhola, Patrick, O'Donnell, Conor, Spitzer, Barbara, Stutzke, Crystal, Lavallée, Vincent-Philippe, Hébert, Josée, Krivtsov, Andrei V, Melnick, Ari, Paietta, Elisabeth M, Tallman, Martin S, Letai, Anthony, Sauvageau, Guy, Pouliot, Gayle, Levine, Ross, Marto, Jarrod A, Armstrong, Scott A, Kentsis, Alex (April 2018) MEF2C Phosphorylation Is Required for Chemotherapy Resistance in Acute Myeloid Leukemia. Cancer Discovery, 8 (4). pp. 478-497. ISSN 2159-8274

Brumby, A. M., Goulding, K. R., Schlosser, T., Loi, S., Galea, R., Khoo, P., Bolden, J. E., Aigaki, T., Humbert, P. O., Richardson, H. E. (May 2011) Identification of novel Ras-cooperating oncogenes in Drosophila melanogaster: A RhoGEF/Rho-family/JNK pathway is a central driver of tumorigenesis. Genetics, 188 (1). pp. 105-125. ISSN 00166731 (ISSN)

Brägelmann, Johannes, Lorenz, Carina, Borchmann, Sven, Nishii, Kazuya, Wegner, Julia, Meder, Lydia, Ostendorp, Jenny, Ast, David F, Heimsoeth, Alena, Nakasuka, Takamasa, Hirabae, Atsuko, Okawa, Sachi, Dammert, Marcel A, Plenker, Dennis, Klein, Sebastian, Lohneis, Philipp, Gu, Jianing, Godfrey, Laura K, Forster, Jan, Trajkovic-Arsic, Marija, Zillinger, Thomas, Haarmann, Mareike, Quaas, Alexander, Lennartz, Stefanie, Schmiel, Marcel, D'Rozario, Joshua, Thomas, Emily S, Li, Henry, Schmitt, Clemens A, George, Julie, Thomas, Roman K, von Karstedt, Silvia, Hartmann, Gunther, Büttner, Reinhard, Ullrich, Roland T, Siveke, Jens T, Ohashi, Kadoaki, Schlee, Martin, Sos, Martin L (September 2021) MAPK-pathway inhibition mediates inflammatory reprogramming and sensitizes tumors to targeted activation of innate immunity sensor RIG-I. Nature Communications, 12 (1). p. 5505. ISSN 2041-1723

Burbridge, Timothy J, Ratliff, Jacob M, Dwivedi, Deepanjali, Vrudhula, Uma, Alvarado-Huerta, Francisco, Sjulson, Lucas, Ibrahim, Leena Ali, Cheadle, Lucas, Fishell, Gordon, Batista-Brito, Renata (April 2024) Disruption of Cholinergic Retinal Waves Alters Visual Cortex Development and Function. bioRxiv. (Public Dataset) (Submitted)

Burr, Ansen, Ji, Junyi, Ozler, Kadir, Mentrup, Heather, Eskiocak, Onur, Cumberland, Rachel, Menk, Ashley, Zhang, Xiaoyi, Overacre-Delgoffe, Abigail, Rittenhouse, Natalie, Marshall, Chris, Cooper, Vaughn, Poholek, Amanda, Delgoffe, Greg, Beyaz, Semir, Hand, Timothy (2023) Excess dietary sugar alters colonocyte metabolism and impairs the early proliferative response to damage. In: Crohns and Colitis Congress, JAN 19-21, 2023, Denver, CO.

Burr, Ansen HP, Ji, Junyi, Ozler, Kadir, Mentrup, Heather L, Eskiocak, Onur, Yueh, Brian, Cumberland, Rachel, Menk, Ashley V, Rittenhouse, Natalie, Marshall, Chris W, Chiaranunt, Pailin, Zhang, Xiaoyi, Mullinax, Lauren, Overacre-Delgoffe, Abigail, Cooper, Vaughn S, Poholek, Amanda C, Delgoffe, Greg M, Mollen, Kevin P, Beyaz, Semir, Hand, Timothy W (2023) Excess Dietary Sugar Alters Colonocyte Metabolism and Impairs the Proliferative Response to Damage. Cellular and Molecular Gastroenterology and Hepatology, 16 (2). pp. 287-316. ISSN 2352-345X (Public Dataset)

Burridge, K., Feramisco, J. R. (1980) Micro-Injection and Localization of a 130k-Protein in Living Fibroblasts - Relationship to Actin and Fibronectin. Cell, 19 (3). pp. 587-595.

C

Carbonetti, G., Converso, C., Clement, T., Wang, C., Trotman, L., Ojima, I., Kaczocha, M. (October 2019) Docetaxel/cabazitaxel and fatty acid binding protein 5 inhibitors produce synergistic inhibition of prostate cancer growth. Prostate. ISSN 0270-4137

Carcy, Salomé (May 2024) How Human and Murine T Cells Meet Their Fate: Cross-Species Comparison of Conventional and Innate T Cells. PhD thesis, Cold Spring Harbor Laboratory.

Carter, J. A., Gilbo, P., Atwal, G. S. (December 2019) IMPRES does not reproducibly predict response to immune checkpoint blockade therapy in metastatic melanoma. Nat Med, 25 (12). pp. 1833-1835. ISSN 1078-8956 (Public Dataset)

Castle, William Ernest (July 1912) On the inheritance of tricolor coat in guinea-pigs, and its relation to Galton's law of ancestral heredity. The American Naturalist, 46 (547). pp. 437-440.

Castle, William Ernest (March 1912) On the origin of a pink-eyed guinea-pig with colored coat. Science, 35 (900). pp. 508-510.

Castle, William Ernest (1914) Size inheritance and the pureline theory. Zeitschrift für induktive Abstammungs und Vererbungslehre, 12. pp. 225-237.

Castle, William Ernest (April 1916) Size inheritance in guinea-pig crosses. Proceedings of the National Academy of Sciences, 2 (4). pp. 252-264.

Castle, William Ernest, Phillips, John C. (November 1913) Further experiments on ovarian transplantation in guinea-pigs. Science, 38 (987). pp. 783-786.

Cazakoff, BN, Shea, SD (January 2015) Simultaneous collection of in vivo functional and anatomical data from individual neurons in awake mice. In: Neural Tracing Methods. UNSPECIFIED, pp. 85-99.

Chae, H., Kepple, D. R., Bast, W. G., Murthy, V. N., Koulakov, A. A., Albeanu, D. F. (August 2019) Mosaic representations of odors in the input and output layers of the mouse olfactory bulb. Nat Neurosci, 22 (8). 1306-1317.. ISSN 1097-6256 (Public Dataset)

Chae, Honggoo, Banerjee, Arkarup, Dussauze, Marie, Albeanu, Dinu F (September 2022) Long-range functional loops in the mouse olfactory system and their roles in computing odor identity. Neuron. S0896-6273(22)00810. ISSN 0896-6273

Chan, K., Robert, F., Oertlin, C., Kapeller-Libermann, D., Avizonis, D., Gutierrez, J., Handly-Santana, A., Doubrovin, M., Park, J., Schoepfer, C., Da Silva, B., Yao, M., Gorton, F., Shi, J., Thomas, C. J., Brown, L. E., Porco, J. A., Pollak, M., Larsson, O., Pelletier, J., Chio, I. I. C. (November 2019) eIF4A supports an oncogenic translation program in pancreatic ductal adenocarcinoma. Nat Commun, 10 (1). p. 5151. ISSN 2041-1723

Chang, K. C., Diermeier, S. D., Yu, A. T., Brine, L. D., Russo, S., Bhatia, S., Alsudani, H., Kostroff, K., Bhuiya, T., Brogi, E., Pappin, D. J., Bennett, C. F., Rigo, F., Spector, D. L. (December 2020) MaTAR25 lncRNA regulates the Tensin1 gene to impact breast cancer progression. Nat Commun, 11 (1). p. 6438. ISSN 2041-1723

Cheadle, L., Tzeng, C. P., Kalish, B. T., Harmin, D. A., Rivera, S., Ling, E., Nagy, M. A., Hrvatin, S., Hu, L., Stroud, H., Burkly, L. C., Chen, C., Greenberg, M. E. (August 2018) Visual Experience-Dependent Expression of Fn14 Is Required for Retinogeniculate Refinement. Neuron, 99 (3). 525-539.e10. ISSN 0896-6273 (Print)0896-6273

Cheadle, Lucas, Rivera, Samuel A, Phelps, Jasper S, Ennis, Katelin A, Stevens, Beth, Burkly, Linda C, Lee, Wei-Chung Allen, Greenberg, Michael E (November 2020) Sensory Experience Engages Microglia to Shape Neural Connectivity through a Non-Phagocytic Mechanism. Neuron, 108 (3). 451-468.e9. ISSN 0896-6273

Chen, Alex Yen-Yu, Tully, Tim (March 2018) A stress-enhanced model for discovery of disease-modifying gene: Ece1-suppresses the toxicity of α-synuclein A30P. Neurobiology of Disease, 114. pp. 153-163. ISSN 0969-9961

Chen, X., Sun, Y. C., Zhan, H., Kebschull, J. M., Fischer, S., Matho, K., Huang, Z. J., Gillis, J., Zador, A. M. (October 2019) High-Throughput Mapping of Long-Range Neuronal Projection Using In Situ Sequencing. Cell, 179 (3). 772-786.e19. ISSN 0092-8674 (Public Dataset)

Chen, Y., McElvain, L. E., Tolpygo, A. S., Ferrante, D., Friedman, B., Mitra, P. P., Karten, H. J., Freund, Y., Kleinfeld, D. (March 2019) An active texture-based digital atlas enables automated mapping of structures and markers across brains. Nat Methods, 16 (4). pp. 341-350. ISSN 1548-7091

Chen, Yushu, Chen, Xiaoyin, Baserdem, Batuhan, Zhan, Huiqing, Li, Yan, Davis, Martin B, Kebschull, Justus M, Zador, Anthony M, Koulakov, Alexei A, Albeanu, Dinu F (October 2022) High-throughput sequencing of single neuron projections reveals spatial organization in the olfactory cortex. Cell, 185 (22). 4117-4134.e28. ISSN 0092-8674

Cheng, D., Tuveson, D. (January 2018) Kras in Organoids. Cold Spring Harb Perspect Med, 8 (10). ISSN 2157-1422

Cheng, Derek K, Oni, Tobiloba E, Thalappillil, Jennifer S, Park, Youngkyu, Ting, Hsiu-Chi, Alagesan, Brinda, Prasad, Nadia V, Addison, Kenneth, Rivera, Keith D, Pappin, Darryl J, Van Aelst, Linda, Tuveson, David A (May 2021) Oncogenic KRAS engages an RSK1/NF1 pathway to inhibit wild-type RAS signaling in pancreatic cancer. Proceedings of the National Academy of Sciences of USA, 118 (21). e2016904118-e2016904118. ISSN 0027-8424

Chibaya, Loretah, Murphy, Katherine C, DeMarco, Kelly D, Gopalan, Sneha, Liu, Haibo, Parikh, Chaitanya N, Lopez-Diaz, Yvette, Faulkner, Melissa, Li, Junhui, Morris, John P, Ho, Yu-Jui, Chana, Sachliv K, Simon, Janelle, Luan, Wei, Kulick, Amanda, de Stanchina, Elisa, Simin, Karl, Zhu, Lihua Julie, Fazzio, Thomas G, Lowe, Scott W, Ruscetti, Marcus (June 2023) EZH2 inhibition remodels the inflammatory senescence-associated secretory phenotype to potentiate pancreatic cancer immune surveillance. Nature Cancer, 4 (6). pp. 872-892. ISSN 2662-1347

Chou, Tsung-Han, Epstein, Max, Fritzemeier, Russell G, Akins, Nicholas S, Paladugu, Srinu, Ullman, Elijah Z, Liotta, Dennis C, Traynelis, Stephen F, Furukawa, Hiro (August 2024) Molecular mechanism of ligand gating and opening of NMDA receptor. Nature, 632 (8023). pp. 209-217. ISSN 0028-0836 (Public Dataset)

Chu, Timothy H, Khairallah, Camille, Shieh, Jason, Cho, Rhea, Qiu, Zhijuan, Zhang, Yue, Eskiocak, Onur, Thanassi, David G, Kaplan, Mark H, Beyaz, Semir, Yang, Vincent W, Bliska, James B, Sheridan, Brian S (December 2021) γδ T cell IFNγ production is directly subverted by Yersinia pseudotuberculosis outer protein YopJ in mice and humans. PLoS Pathogens, 17 (12). e1010103. ISSN 1553-7374

Ciccone, M. F., Trousdell, M. C., Dos Santos, C. O. (November 2020) Characterization of Organoid Cultures to Study the Effects of Pregnancy Hormones on the Epigenome and Transcriptional Output of Mammary Epithelial Cells. J Mammary Gland Biol Neoplasia, 25 (4). pp. 351-366. ISSN 1083-3021

Cifani, Paolo, Li, Zhi, Luo, Danmeng, Grivainis, Mark, Intlekofer, Andrew M, Fenyö, David, Kentsis, Alex (April 2021) Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics. Journal of Proteome Research, 20 (4). pp. 1835-1848. ISSN 1535-3893

Cisse, Y. M., Borniger, J. C., Lemanski, E., Walker, W. H., Nelson, R. J. (January 2018) Time-Restricted Feeding Alters the Innate Immune Response to Bacterial Endotoxin. J Immunol, 200 (2). pp. 681-687. ISSN 1550-6606 (Electronic)0022-1767 (Linking)

Clark, J. W., Camidge, D. R., Kwak, E. L., Maki, R. G., Shapiro, G. I., Chen, I., Tan, W., Randolph, S., Christensen, J. G., Ozeck, M., Tang, Y., Wilner, K. D., Salgia, R. (January 2020) Dose-escalation trial of the ALK, MET & ROS1 inhibitor, crizotinib, in patients with advanced cancer. Future Oncol, 16 (1). pp. 4289-4301. ISSN 1479-6694

Clarke, D. J. B., Wang, L., Jones, A., Wojciechowicz, M. L., Torre, D., Jagodnik, K. M., Jenkins, S. L., McQuilton, P., Flamholz, Z., Silverstein, M. C., Schilder, B. M., Robasky, K., Castillo, C., Idaszak, R., Ahalt, S. C., Williams, J., Schurer, S., Cooper, D. J., de Miranda Azevedo, R., Klenk, J. A., Haendel, M. A., Nedzel, J., Avillach, P., Shimoyama, M. E., Harris, R. M., Gamble, M., Poten, R., Charbonneau, A. L., Larkin, J., Brown, C. T., Bonazzi, V. R., Dumontier, M. J., Sansone, S. A., Ma'ayan, A. (October 2019) FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources. Cell Syst, 9 (5). pp. 417-421. ISSN 2405-4712

Climenko, David R. (1936) Influence of magnesium oxide on antipyretic action and toxicity of acetylsalicylic acid in rabbits. Proceedings of the Society for Experimental Biology and Medicine, 34. p. 807.

Cole, Kenneth S., Cole, Robert H. (March 1936) Electric impedance of asterias eggs. J Gen Physiol., 19 (4). pp. 609-623.

Concepcion, Carla P, Ma, Sai, LaFave, Lindsay M, Bhutkar, Arjun, Liu, Manyuan, DeAngelo, Lydia P, Kim, Jonathan Y, Del Priore, Isabella, Schoenfeld, Adam J, Miller, Manon, Kartha, Vinay K, Westcott, Peter MK, Sánchez-Rivera, Francisco J, Meli, Kevin, Gupta, Manav, Bronson, Roderick T, Riely, Gregory J, Rekhtman, Natasha, Rudin, Charles M, Kim, Carla F, Regev, Aviv, Buenrostro, Jason D, Jacks, Tyler (February 2022) Smarca4 Inactivation Promotes Lineage-Specific Transformation and Early Metastatic Features in the Lung. Cancer Discovery, 12 (2). pp. 562-585. ISSN 0008-5472

Conklin, D. S. (October 2003) RNA-interference-based silencing of mammalian gene expression. Chembiochem, 4 (10). pp. 1033-1039. ISSN 1439-4227

Copple, C. D., McDougall, J. K. (1976) Clonal Derivatives of a Herpes Type-2 Transformed Hamster Cell Line (333-8-9) - Cytogenetic Analysis, Tumorigenicity and Virus Sequence Detection. International Journal of Cancer, 17 (4). pp. 501-510.

Corner, George W. (1924) The problem of embryonic pathology in mammals with observations upon intrauterine mortality in the pig. American Journal of Anatomy. pp. 523-545.

Cotero, Victoria, Graf, John, Miwa, Hiromi, Hirschstein, Zall, Qanud, Khaled, Huerta, Tomás S, Tai, Ningwen, Ding, Yuyan, Jimenez-Cowell, Kevin, Tomaio, Jacquelyn N, Song, Weiguo, Devarajan, Alex, Tsaava, Tea, Madhavan, Radhika, Wallace, Kirk, Loghin, Evelina, Morton, Christine, Fan, Ying, Kao, Tzu-Jen, Akhtar, Kainat, Damaraju, Meghana, Barenboim, Linda, Maietta, Teresa, Ashe, Jeffrey, Tracey, Kevin J, Coleman, Thomas R, Di Carlo, Dino, Shin, Damian, Zanos, Stavros, Chavan, Sangeeta S, Herzog, Raimund I, Puleo, Chris (March 2022) Stimulation of the hepatoportal nerve plexus with focused ultrasound restores glucose homoeostasis in diabetic mice, rats and swine. Nature Biomedical Engineering. ISSN 2157-846X

Couto, Joao, Musall, Simon, Sun, Xiaonan R, Khanal, Anup, Gluf, Steven, Saxena, Shreya, Kinsella, Ian, Abe, Taiga, Cunningham, John P, Paninski, Liam, Churchland, Anne K (June 2021) Chronic, cortex-wide imaging of specific cell populations during behavior. Nature Protocols. ISSN 1754-2189

Cowley, Benjamin R, Smith, Matthew A, Kohn, Adam, Yu, Byron M (December 2016) Stimulus-Driven Population Activity Patterns in Macaque Primary Visual Cortex. PLoS Computational Biology, 12 (12). e1005185. ISSN 1553-734X

Cowley, Benjamin R, Snyder, Adam C, Acar, Katerina, Williamson, Ryan C, Yu, Byron M, Smith, Matthew A (November 2020) Slow Drift of Neural Activity as a Signature of Impulsivity in Macaque Visual and Prefrontal Cortex. Neuron, 108 (3). 551-567.e8. ISSN 0896-6273

Croft, A. P., Campos, J., Jansen, K., Turner, J. D., Marshall, J., Attar, M., Savary, L., Wehmeyer, C., Naylor, A. J., Kemble, S., Begum, J., Durholz, K., Perlman, H., Barone, F., McGettrick, H. M., Fearon, D. T., Wei, K., Raychaudhuri, S., Korsunsky, I., Brenner, M. B., Coles, M., Sansom, S. N., Filer, A., Buckley, C. D. (May 2019) Distinct fibroblast subsets drive inflammation and damage in arthritis. Nature, 570 (7760). pp. 246-251. ISSN 0028-0836

Crow, Megan, Suresh, Hamsini, Lee, John, Gillis, Jesse (April 2022) Coexpression reveals conserved gene programs that co-vary with cell type across kingdoms. Nucleic Acids Research. ISSN 0305-1048

Cullen, H., Schorn, A. J. (July 2020) Endogenous Retroviruses Walk a Fine Line between Priming and Silencing. Viruses, 12 (8). p. 792. ISSN 1999-4915

Czeisler, C. M., Silva, T. M., Fair, S. R., Liu, J., Tupal, S., Kaya, B., Cowgill, A., Mahajan, S., Silva, P. E., Wang, Y., Blissett, A. R., Goksel, M., Borniger, J. C., Zhang, N., Fernandes-Junior, S. A., Catacutan, F., Alves, M. J., Nelson, R. J., Sundaresean, V., Rekling, J., Takakura, A. C., Moreira, T. S., Otero, J. J. (April 2019) The role of PHOX2B-derived astrocytes in chemosensory control of breathing and sleep homeostasis. J Physiol, 597 (8). pp. 2225-2251. ISSN 1469-7793

D

Dalla, Christina, Jaric, Ivana, Pavlidi, Pavlina, Hodes, Georgia E, Kokras, Nikolaos, Bespalov, Anton, Kas, Martien J, Steckler, Thomas, Kabbaj, Mohamed, Würbel, Hanno, Marroco, Jordan, Tollkuhn, Jessica, Shansky, Rebecca, Bangasser, Debra, Becker, Jill B, McCarthy, Margaret, Ferland-Beckham, Chantelle (October 2023) Practical solutions for including Sex As a Biological Variable (SABV) in preclinical neuropsychopharmacological research. Journal of Neuroscience Methods. p. 110003. ISSN 0165-0270

Danko, C. G., Choate, L. A., Marks, B. A., Rice, E. J., Wang, Z., Chu, T., Martins, A. L., Dukler, N., Coonrod, S. A., Tait Wojno, E. D., Lis, J. T., Kraus, W. L., Siepel, A. (January 2018) Dynamic evolution of regulatory element ensembles in primate CD4(+) T cells. Nat Ecol Evol. pp. 1-12. ISSN 2397-334x

Dantas, Ezequiel, Murthy, Anirudh, Ahmed, Tanvir, Ahmed, Mujmmail, Ramsamooj, Shakti, Hurd, Maurice A, Lam, Tiffany, Malbari, Murtaza, Agrusa, Christopher, Elemento, Olivier, Zhang, Chen, Pappin, Darryl J, McGraw, Timothy E, Stiles, Brendon M, Altorki, Nasser K, Goncalves, Marcus D (October 2023) TIMP1 is an early biomarker for detection and prognosis of lung cancer. Clinical and Translational Medicine, 13 (10). e1391. ISSN 2001-1326 (Public Dataset)

Daruwalla, Kyle, Martin, Irene Nozal, Frankel, Andrew, Naglic, Diana, Ahmad, Zainab, Hou, Xun Helen (May 2024) A 3D whole-face movement analysis system to uncover underlying physiology in mice. bioRxiv. (Submitted)

Dasgupta, Sanjoy, Meirovitch, Yaron, Zheng, Xingyu, Bush, Inle, Lichtman, Jeff W, Navlakha, Saket (September 2024) A neural algorithm for computing bipartite matchings. Proceedings of the National Academy of Sciences of the United States of America, 121 (37). e2321032121. ISSN 0027-8424 (Public Dataset)

Dasgupta, A., Shukla, S.K., Vernucci, E., King, R.J., Abrego, J., Mulder, S.E., Mullen, N.J., Graves, G., Buettner, K., Thakur, R., Murthy, D., Attri, K.S., Wang, D., Chaika, N.V., Pacheco, C.G., Rai, I., Engle, D. D., Grandgenett, P. M., Punsoni, M., Reames, B.N., Teoh-Fitzgerald, M., Oberley-Deegan, R., Yu, F., Klute, K.A., Hollingsworth, M.A., Zimmerman, M.C., Mehla, K., Sadoshima, J., Tuveson, D. A., Singh, P.K. (July 2020) SIRT1-NOX4 Signaling Axis Regulates Cancer Cachexia. J Exp Med, 217 (7). e20190745. ISSN 0022-1007

Davenport, Charles Benedict (November 1937) Home of the Ancon sheep. Science, 86 (2236). p. 422.

Delanerolle, P., Adelstein, R. S., Feramisco, J. R., Burridge, K. (1981) Immunological Characterization and Intracellular-Localization of Myosin Light Chain Kinase. Biophysical Journal, 33 (2). A252-A252.

Delas, M. J., Jackson, B. T., Kovacevic, T., Vangelisti, S., Munera Maravilla, E., Wild, S. A., Stork, E. M., Erard, N., Knott, S. R. V., Hannon, G. J. (April 2019) lncRNA Spehd Regulates Hematopoietic Stem and Progenitor Cells and Is Required for Multilineage Differentiation. Cell Rep, 27 (3). 719-729.e6.

Delevich, K., Jaaro-Peled, H., Penzo, M., Sawa, A., Li, B. (February 2020) Parvalbumin interneuron dysfunction in a thalamo-prefrontal cortical circuit in Disc1 locus impairment mice. eNeuro. ISSN 2373-2822

Demir, E., Li, K., Bobrowski-Khoury, N., Sanders, J. I., Beynon, R. J., Hurst, J. L., Kepecs, A., Axel, R. (January 2020) The pheromone darcin drives a circuit for innate and reinforced behaviours. Nature, 578 (7793). pp. 137-141. ISSN 0028-0836

Deng, Hanfei, Xiao, Xiong, Yang, Tao, Ritola, Kimberly, Hantman, Adam, Li, Yulong, Huang, Z Josh, Li, Bo (December 2021) A genetically defined insula-brainstem circuit selectively controls motivational vigor. Cell. ISSN 0092-8674

Denissov, S., Van Driel, M., Voit, R., Hekkelman, M., Hulsen, T., Hernandez, N., Grummt, I., Wehrens, R., Stunnenberg, H. (February 2007) Identification of novel functional TBP-binding sites and general factor repertoires. Embo Journal, 26 (4). pp. 944-954. ISSN 0261-4189

Denney, Katherine, Wu, Melody, Sun, Simón E, Moon, Soyoun, Tollkuhn, Jessica (2023) Comparative analysis of gonadal hormone receptor expression in the house mouse, meadow vole, and prairie vole brain. (Submitted)

Denton, A. E., Carr, E. J., Magiera, L. P., Watts, A. J. B., Fearon, D. T. (July 2019) Embryonic FAP(+) lymphoid tissue organizer cells generate the reticular network of adult lymph nodes. J Exp Med, 216 (10). pp. 2242-2252. ISSN 0022-1007

Deshmukh, Meghshree, Subhash, Santhilal, Hu, Zhicheng, Mohammad, Majd, Jarneborn, Anders, Pullerits, Rille, Jin, Tao, Kopparapu, Pradeep Kumar (2023) Gene expression of S100a8/a9 predicts Staphylococcus aureus-induced septic arthritis in mice. Frontiers in Microbiology, 14. p. 1146694. ISSN 1664-302X (Public Dataset)

Djebali, S., Davis, C. A., Merkel, A., Dobin, A., Lassmann, T., Mortazavi, A., Tanzer, A., Lagarde, J., Lin, W., Schlesinger, F., Xue, C., Marinov, G. K., Khatun, J., Williams, B. A., Zaleski, C., Rozowsky, J., Röder, M., Kokocinski, F., Abdelhamid, R. F., Alioto, T., Antoshechkin, I., Baer, M. T., Bar, N. S., Batut, P., Bell, K., Bell, I., Chakrabortty, S., Chen, X., Chrast, J., Curado, J., Derrien, T., Drenkow, J., Dumais, E., Dumais, J., Duttagupta, R., Falconnet, E., Fastuca, M., Fejes-Toth, K., Ferreira, P., Foissac, S., Fullwood, M. J., Gao, H., Gonzalez, D., Gordon, A., Gunawardena, H., Howald, C., Jha, S., Johnson, R., Kapranov, P., King, B., Kingswood, C., Luo, O. J., Park, E., Persaud, K., Preall, J. B., Ribeca, P., Risk, B., Robyr, D., Sammeth, M., Schaffer, L., See, L. H., Shahab, A., Skancke, J., Suzuki, A. M., Takahashi, H., Tilgner, H., Trout, D., Walters, N., Wang, H., Wrobel, J., Yu, Y., Ruan, X., Hayashizaki, Y., Harrow, J., Gerstein, M., Hubbard, T., Reymond, A., Antonarakis, S. E., Hannon, G., Giddings, M. C., Ruan, Y., Wold, B., Carninci, P., Guig, R., Gingeras, T. R. (September 2012) Landscape of transcription in human cells. Nature, 489 (7414). pp. 101-108. ISSN 0028-0836

Dokshin, G. A., Davis, G. M., Sawle, A. D., Eldridge, M. D., Nicholls, P. K., Gourley, T. E., Romer, K. A., Molesworth, L. W., Tatnell, H. R., Ozturk, A. R., de Rooij, D. G., Hannon, G. J., Page, D. C., Mello, C. C., Carmell, M. A. (December 2019) GCNA Interacts with Spartan and Topoisomerase II to Regulate Genome Stability. Dev Cell. ISSN 1534-5807 (Public Dataset)

Domínguez, Soledad, Ma, Liang, Yu, Han, Pouchelon, Gabrielle, Mayer, Christian, Spyropoulos, George D, Cea, Claudia, Buzsáki, György, Fishell, Gordon, Khodagholy, Dion, Gelinas, Jennifer N (July 2021) A transient postnatal quiescent period precedes emergence of mature cortical dynamics. eLife, 10. ISSN 2050-084X

Dong, Ao, He, Kaikai, Dudok, Barna, Farrell, Jordan S, Guan, Wuqiang, Liput, Daniel J, Puhl, Henry L, Cai, Ruyi, Wang, Huan, Duan, Jiali, Albarran, Eddy, Ding, Jun, Lovinger, David M, Li, Bo, Soltesz, Ivan, Li, Yulong (November 2021) A fluorescent sensor for spatiotemporally resolved imaging of endocannabinoid dynamics in vivo. Nature Biotechnology. ISSN 1087-0156

Dore, K., Pao, Y., Soria Lopez, J., Aronson, S., Zhan, H., Ghosh, S., Merrill, S., Zador, A. M., Malinow, R., Kebschull, J. M. (January 2020) SYNPLA, a method to identify synapses displaying plasticity after learning. Proc Natl Acad Sci U S A, 117 (6). pp. 3214-3219. ISSN 0027-8424 (Public Dataset)

Draetta, G., Beach, D. (February 1989) The mammalian cdc2 protein kinase: mechanisms of regulation during the cell cycle. J Cell Sci Suppl, 92 (2, Sup). pp. 21-7. ISSN ‎0021-9533

Driehuis, E., Kolders, S., Spelier, S., Lohmussaar, K., Willems, S. M., Devriese, L. A., de Bree, R., de Ruiter, E. J., Korving, J., Begthel, H., Van Es, J. H., Geurts, V., He, G. W., van Jaarsveld, R. H., Oka, R., Muraro, M. J., Vivie, J., Zandvliet, Mmjm, Hendrickx, A. P. A., Iakobachvili, N., Sridevi, P., Kranenburg, O., van Boxtel, R., Kops, Gjpl, Tuveson, D. A., Peters, P. J., van Oudenaarden, A., Clevers, H. (May 2019) Oral mucosal organoids as a potential platform for personalized cancer therapy. Cancer Discov, 9 (7). pp. 852-871. ISSN 2159-8274

Dudok, Barna, Szoboszlay, Miklos, Paul, Anirban, Klein, Peter M, Liao, Zhenrui, Hwaun, Ernie, Szabo, Gergely G, Geiller, Tristan, Vancura, Bert, Wang, Bor-Shuen, McKenzie, Sam, Homidan, Jesslyn, Klaver, Lianne MF, English, Daniel F, Huang, Z Josh, Buzsáki, György, Losonczy, Attila, Soltesz, Ivan (October 2021) Recruitment and inhibitory action of hippocampal axo-axonic cells during behavior. Neuron. ISSN 0896-6273

Dulmovits, Brian M, Tang, Yuefeng, Papoin, Julien, He, Mingzhu, Li, Jianhua, Yang, Huan, Addorisio, Meghan E, Kennedy, Lauren, Khan, Mushran, Brindley, Elena C, Ashley, Ryan J, Ackert-Bicknell, Cheryl, Hale, John, Kurita, Ryo Kurita, Nakamura, Yukio, Diamond, Betty, Barnes, Betsy J, Hermine, Olivier, Gallagher, Patrick G, Steiner, Laurie Ann, Lipton, Jeffrey M, Taylor, Naomi, Mohandas, Narla, Andersson, Ulf, Al-Abed, Yousef, Tracey, Kevin J, Blanc, Lionel (January 2022) HMGB1-Mediated Restriction of EPO Signaling Contributes to Anemia of Inflammation. Blood. ISSN 0006-4971

Dumontier, Dimitri, Liebman, Samuel A, Le, Viet-Hang, George, Shanu, Valdemar, Deasia, Van Aelst, Linda, Pouchelon, Gabrielle (September 2024) Restoring transient connectivity during development improves dysfunctions in fragile X mice. bioRxiv. ISSN 2692-8205 (Submitted)

Dvorkin, Roman, Shea, Stephen D (February 2022) Precise and pervasive phasic bursting in locus coeruleus during maternal behavior in mice. The Journal of Neuroscience. ISSN 0270-6474

Dwivedi, Deepanjali, Dumontier, Dimitri, Sherer, Mia, Lin, Sherry, Mirow, Andrea MC, Qiu, Yanjie, Xu, Qing, Liebman, Samuel A, Joseph, Djeckby, Datta, Sandeep R, Fishell, Gord, Pouchelon, Gabrielle (June 2024) Metabotropic signaling within somatostatin interneurons controls transient thalamocortical inputs during development. Nature Communications, 15 (1). p. 5421. ISSN 2041-1723 (Public Dataset)

de Gee, J.W., Tsetsos, K., Schwabe, L., Urai, A.E., McCormick, D., McGinley, M.J., Donner, T.H. (June 2020) Pupil-linked Phasic Arousal Predicts a Reduction of Choice Bias Across Species and Decision Domains. Elife, 9. e54014. ISSN 2050-084X

E

Eban-Rothschild, Ada, Borniger, Jeremy C, Rothschild, Gideon, Giardino, William J, Morrow, Joshua G, de Lecea, Luis (March 2020) Arousal State-Dependent Alterations in VTA-GABAergic Neuronal Activity. eNeuro, 7 (2). ENEURO.0356-19.2020. ISSN 2373-2822

Efstratiadis, A., Kafatos, F. C., Maxam, A. M., Maniatis, T. (February 1976) Enzymatic in vitro synthesis of globin genes. Cell, 7 (2). pp. 279-88.

Efstratiadis, A., Maniatis, T., Kafatos, F. C., Jeffrey, A., Vournakis, J. N. (1975) Full length and discrete partial reverse transcripts of globin and chorion mRNAs. Cell, 4 (4). pp. 367-78.

Ely, Zackery A, Mathey-Andrews, Nicolas, Naranjo, Santiago, Gould, Samuel I, Mercer, Kim L, Newby, Gregory A, Cabana, Christina M, Rideout, William M, Jaramillo, Grissel Cervantes, Khirallah, Jennifer M, Holland, Katie, Randolph, Peyton B, Freed-Pastor, William A, Davis, Jessie R, Kulstad, Zachary, Westcott, Peter MK, Lin, Lin, Anzalone, Andrew V, Horton, Brendan L, Pattada, Nimisha B, Shanahan, Sean-Luc, Ye, Zhongfeng, Spranger, Stefani, Xu, Qiaobing, Sánchez-Rivera, Francisco J, Liu, David R, Jacks, Tyler (May 2023) A prime editor mouse to model a broad spectrum of somatic mutations in vivo. Nature Biotechnology. ISSN 1087-0156 (Public Dataset)

Elyada, E., Bolisetty, M., Laise, P., Flynn, W. F., Courtois, E. T., Burkhart, R. A., Teinor, J. A., Belleau, P., Biffi, G., Lucito, M. S., Sivajothi, S., Armstrong, T. D., Engle, D. D., Yu, K. H., Hao, Y., Wolfgang, C. L., Park, Y., Preall, J., Jaffee, E. M., Califano, A., Robson, P., Tuveson, D. A. (June 2019) Cross-species single-cell analysis of pancreatic ductal adenocarcinoma reveals antigen-presenting cancer-associated fibroblasts. Cancer Discov, 9 (8). pp. 1102-1123. ISSN 2159-8274

Engel, Tatiana (May 2022) Volatile neurons unite to stabilize visual experience. Nature, 605 (7911). pp. 625-626. ISSN 0028-0836

Engle, D. D., Tiriac, H., Rivera, K. D., Pommier, A., Whalen, S., Oni, T. E., Alagesan, B., Lee, E. J., Yao, M. A., Lucito, M. S., Spielman, B., Da Silva, B., Schoepfer, C., Wright, K., Creighton, B., Afinowicz, L., Yu, K. H., Grutzmann, R., Aust, D., Gimotty, P. A., Pollard, K. S., Hruban, R. H., Goggins, M. G., Pilarsky, C., Park, Y., Pappin, D. J., Hollingsworth, M. A., Tuveson, D. A. (June 2019) The glycan CA19-9 promotes pancreatitis and pancreatic cancer in mice. Science, 364 (6446). pp. 1156-1162. ISSN 0036-8075

F

Fahlgren, Noah, Kapoor, Muskan, Yordanova, Galabina, Papatheodorou, Irene, Waese, Jamie, Cole, Benjamin, Harrison, Peter, Ware, Doreen, Tickle, Timothy, Paten, Benedict, Burdett, Tony, Elsik, Christine G, Tuggle, Christopher K, Provart, Nicholas J (October 2022) Toward a Data Infrastructure for the Plant Cell Atlas. Plant Physiology. ISSN 1532-2548

Farbman, A. I., Gesteland, R. C. (February 1974) Fine structure of olfactory epithelium in the mud puppy, Necturus maculosus. Am J Anat, 139 (2). pp. 227-43.

Fein, Miriam R, He, Xue-Yan, Almeida, Ana S, Bružas, Emilis, Pommier, Arnaud, Yan, Ran, Eberhardt, Anaïs, Fearon, Douglas T, Van Aelst, Linda, Wilkinson, John Erby, Dos Santos, Camila O, Egeblad, Mikala (October 2020) Cancer cell CCR2 orchestrates suppression of the adaptive immune response. Journal of Experimental Medicine, 217 (10). ISSN 0022-1007

Fein, Miriam R, He, Xue-Yan, Almeida, Ana S, Pommier, Arnaud, Bruzas, Emilis, Eberhardt, Anais, Wilkinson, John Erby, dos Santos, Camila, Egeblad, Mikala (May 2018) Targeting cancer cell CCR2 enhances synergistic immune surveillance in breast cancer. In: Functional Annotation of Animal Genomes (FAANG) ASAS-ISAG Joint Symposium.

Fellmann, C., Zuber, J., McJunkin, K., Chang, K. , Malone, C. D., Dickins, R. A., Xu, Q., Hengartner, M. O., Elledge, S. J., Hannon, G. J., Lowe, S. W. (March 2011) Functional Identification of Optimized RNAi Triggers Using a Massively Parallel Sensor Assay. Molecular Cell, 41 (6). pp. 733-746. ISSN 1097-2765

Feramisco, J. R. (1980) Micro-Injection of Multiple Fluorescently Labeled Proteins into Single Living Fibroblasts. European Journal of Cell Biology, 22 (1). p. 331. ISSN 0171-9335

Feramisco, J. R., Burridge, K. (1980) Rapid Purification of Alpha-Actinin, Filamin, and a 130,000-Dalton Protein from Smooth-Muscle. Journal of Biological Chemistry, 255 (3). pp. 1194-1199.

Feramisco, J. R., Glass, D. B., Krebs, E. G. (1980) Optimal Spatial Requirements for the Location of Basic Residues in Peptide Substrates for the Cyclic Amp Dependent Protein Kinase. Journal of Biological Chemistry, 255 (9). pp. 4240-4245.

Ferrer, Miriam, Mourikis, Nicholas, Davidson, Emma E, Kleeman, Sam O, Zaccaria, Marta, Habel, Jill, Rubino, Rachel, Flint, Thomas R, Connell, Claire M, Lukey, Michael J, White, Eileen P, Coll, Anthony P, Venkitaraman, Ashok R, Janowitz, Tobias (2023) Ketogenic diet promotes tumor ferroptosis but induces relative corticosterone deficiency that accelerates cachexia. In: Proceedings of the American Association for Cancer Research Annual Meeting 2023, 2023 Apr 14-19, Orlando, FL.

Findlay, J. B., Brett, M., Pappin, D. J. (September 1981) Primary structure of C-terminal functional sites in ovine rhodopsin. Nature, 293 (5830). pp. 314-7.

Findling, Charles, Hubert, Felix, Acerbi, Luigi, Benson, Brandon, Benson, Julius, Birman, Daniel, Bonacchi, Niccolò, Carandini, Matteo, Catarino, Joana A, Chapuis, Gaelle A, Churchland, Anne K, Dan, Yang, DeWitt, Eric EJ, Engel, Tatiana A, Fabbri, Michele, Faulkner, Mayo, Fiete, Ila Rani, Freitas-Silva, Laura, Gerçek, Berk, Harris, Kenneth D, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Huntenburg, Julia M, Khanal, Anup, Krasniak, Chris, Langdon, Christopher, Latham, Peter E, P Lau, Petrina Y, Mainen, Zach, Meijer, Guido T, Miska, Nathaniel J, Mrsic-Flogel, Thomas D, Noel, Jean-Paul, Nylund, Kai, Pan-Vazquez, Alejandro, Paninski, Liam, Pillow, Jonathan, Rossant, Cyrille, Roth, Noam, Schaeffer, Rylan, Schartner, Michael, Shi, Yanliang, Socha, Karolina Z, Steinmetz, Nicholas A, Svoboda, Karel, Tessereau, Charline, Urai, Anne E, Wells, Miles J, West, Steven Jon, Whiteway, Matthew R, Winter, Olivier, Witten, Ilana B, Zador, Anthony, Dayan, Peter, Pouget, Alexandre (July 2023) Brain-wide representations of prior information in mouse decision-making. bioRxiv. (Submitted)

Fischer, Stephan, Crow, Megan, Harris, Benjamin D, Gillis, Jesse (July 2021) Scaling up reproducible research for single-cell transcriptomics using MetaNeighbor. Nature Protocols. ISSN 1754-2189

Fishell, G., Kepecs, A. (July 2019) Interneuron Types as Attractors and Controllers. Annu Rev Neurosci. ISSN 0147-006x

Fisher, Matthew L, Balinth, Seamus, Hwangbo, Yon, Wu, Caizhi, Ballon, Carlos, Wilkinson, John E, Goldberg, Gary L, Mills, Alea A (October 2021) BRD4 REGULATES TRANSCRIPTION FACTOR ∆Np63αTO DRIVE A CANCER STEM CELL PHENOTYPE IN SQUAMOUS CELL CARCINOMAS. Cancer Research. canres.0707.2021-canres.0707.2021. ISSN 0008-5472

Fricke, Hugo, Curtis, Howard James (July 1935) The Electric Impedance of Hemolyzed Suspensions of Mammalian Erythrocytes. J Gen Physiol., 18 (6). pp. 821-836.

Fu, P., Ramchandran, R., Shaaya, M., Huang, L., Ebenezer, D.L., Jiang, Y., Komarova, Y., Vogel, S.M., Malik, A.B., Minshall, R.D., Du, G., Tonks, N. K., Natarajan, V. (April 2020) Phospholipase D2 Restores Endothelial Barrier Function by Promoting PTPN14-mediated VE-cadherin Dephosphorylation. Journal of Biological Chemistry, 295 (22). pp. 7669-7685. ISSN 0021-9258

Funamizu, Akihiro, Marbach, Fred, Zador, Anthony M (September 2023) Stable sound decoding despite modulated sound representation in the auditory cortex. bioRxiv. (Submitted)

G

Gallimore, P. H., Sharp, P. A., Sambrook, J. (1974) Viral DNA in Transformed-Cells .2. Study of Sequences of Adenovirus-2 DNA in Nine Lines of Transformed Rat Cells Using Specific Fragments of Viral Genome. Journal of Molecular Biology, 89 (1). pp. 49-72.

Gallo, Nicholas B, Berisha, Artan, Van Aelst, Linda (March 2022) Microglia regulate chandelier cell axo-axonic synaptogenesis. Proceedings of the National Academy of Sciences of USA, 119 (11). e2114476119. ISSN 0027-8424

Garg, Ankur, Roske, Yvette, Yamada, Shinnosuke, Uehata, Takuya, Takeuchi, Osamu, Heinemann, Udo (May 2021) PIN and CCCH Zn-finger domains coordinate RNA targeting in ZC3H12 family endoribonucleases. Nucleic Acids Research, 49 (9). pp. 5369-5381. ISSN 0305-1048

Gaudino, Stephen J, Singh, Ankita, Huang, Huakang, Padiadpu, Jyothi, Jean-Pierre, Makheni, Kempen, Cody, Bahadur, Tej, Shiomitsu, Kiyoshi, Blumberg, Richard, Shroyer, Kenneth R, Beyaz, Semir, Shulzhenko, Natalia, Morgun, Andrey, Kumar, Pawan (February 2024) Intestinal IL-22RA1 signaling regulates intrinsic and systemic lipid and glucose metabolism to alleviate obesity-associated disorders. Nature Communications, 15 (1). p. 1597. ISSN 2041-1723 (Public Dataset)

Gaudino, S. J., Beaupre, M., Lin, X., Joshi, P., Rathi, S., McLaughlin, P. A., Kempen, C., Mehta, N., Eskiocak, O., Yueh, B., Blumberg, R. S., van der Velden, A. W. M., Shroyer, K. R., Bialkowska, A. B., Beyaz, S., Kumar, P. (October 2020) IL-22 receptor signaling in Paneth cells is critical for their maturation, microbiota colonization, Th17-related immune responses, and anti-Salmonella immunity. Mucosal Immunol. ISSN 1933-0219

Gearty, Sofia V, Dündar, Friederike, Zumbo, Paul, Espinosa-Carrasco, Gabriel, Shakiba, Mojdeh, Sanchez-Rivera, Francisco J, Socci, Nicholas D, Trivedi, Prerak, Lowe, Scott W, Lauer, Peter, Mohibullah, Neeman, Viale, Agnes, DiLorenzo, Teresa P, Betel, Doron, Schietinger, Andrea (November 2021) An autoimmune stem-like CD8 T cell population drives type 1 diabetes. Nature. ISSN 0028-0836

Gegenhuber, Bruno, Tollkuhn, Jessica (2024) Estrogen Receptor Chromatin Profiling by CUT&RUN. In: Methods in Molecular Biology. UNSPECIFIED, pp. 133-150. ISBN 9781071640708

Genkin, Mikhail, Shenoy, Krishna V, Chandrasekaran, Chandramouli, Engel, Tatiana A (July 2023) The dynamics and geometry of choice in premotor cortex. (Submitted)

Ghosh, Arnab, Michels, Judith, Mezzadra, Riccardo, Venkatesh, Divya, Dong, Lauren, Gomez, Ricardo, Samaan, Fadi, Ho, Yu-Jui, Campesato, Luis Felipe, Mangarin, Levi, Fak, John, Suek, Nathan, Holland, Aliya, Liu, Cailian, Abu-Akeel, Mohsen, Bykov, Yonina, Zhong, Hong, Fitzgerald, Kelly, Budhu, Sadna, Chow, Andrew, Zappasodi, Roberta, Panageas, Katherine S, de Henau, Olivier, Ruscetti, Marcus, Lowe, Scott W, Merghoub, Taha, Wolchok, Jedd D (September 2022) Increased p53 expression induced by APR-246 reprograms tumor-associated macrophages to augment immune checkpoint blockade. Journal of Clinical Investigation, 132 (18). e148141. ISSN 0021-9738

Ghosh, Sanchari, Zador, Anthony M (March 2021) Corticostriatal Plasticity Established by Initial Learning Persists after Behavioral Reversal. eNeuro, 8 (2). pp. 1-10. ISSN 2373-2822

Giovanniello, J., Yu, K., Furlan, A., Nachtrab, G. T., Sharma, R., Chen, X., Li, B. (November 2020) A Central Amygdala-Globus Pallidus Circuit Conveys Unconditioned Stimulus-Related Information and Controls Fear Learning. J Neurosci, 40 (47). pp. 9043-9054. ISSN 0270-6474 (Print)0270-6474

Giovannucci, A., Friedrich, J., Gunn, P., Kalfon, J., Brown, B. L., Koay, S. A., Taxidis, J., Najafi, F., Gauthier, J. L., Zhou, P., Khakh, B. S., Tank, D. W., Chklovskii, D. B., Pnevmatikakis, E. A. (January 2019) CaImAn an open source tool for scalable calcium imaging data analysis. Elife, 8. ISSN 2050-084x

Giuliano, C. J., Lin, A., Girish, V., Sheltzer, J. M. (August 2019) Generating Single Cell–Derived Knockout Clones in Mammalian Cells with CRISPR/Cas9. Current Protocols in Molecular Biology, 128 (1). Art number e100. ISSN 19343639 (ISSN)

Giuliano, C. J., Lin, A., Smith, J. C., Palladino, A. C., Sheltzer, J. M. (February 2018) MELK expression correlates with tumor mitotic activity but is not required for cancer growth. Elife, 7. ISSN 2050-084x

Giuliano, C. J., Lin, A., Girish, V., Sheltzer, J. M. (September 2019) Generating Single Cell-Derived Knockout Clones in Mammalian Cells with CRISPR/Cas9. Curr Protoc Mol Biol, 128 (1). e100. ISSN 1934-3639 (Print)1934-3647

Goldman, R. D., Chang, C., Williams, J. F. (1974) Properties and Behavior of Hamster Embryo Cells Transformed by Human Adenovirus Type 5. Cold Spring Harbor Symposia on Quantitative Biology, 39. pp. 601-614.

Goncalves, M. D., Hwang, S. K., Pauli, C., Murphy, C. J., Cheng, Z., Hopkins, B. D., Wu, D., Loughran, R. M., Emerling, B. M., Zhang, G., Fearon, D. T., Cantley, L. C. (January 2018) Fenofibrate prevents skeletal muscle loss in mice with lung cancer. Proc Natl Acad Sci U S A, 115 (4). E743-E752. ISSN 0027-8424

Good, Charly R, Aznar, M Angela, Kuramitsu, Shunichiro, Samareh, Parisa, Agarwal, Sangya, Donahue, Greg, Ishiyama, Kenichi, Wellhausen, Nils, Rennels, Austin K, Ma, Yujie, Tian, Lifeng, Guedan, Sonia, Alexander, Katherine A, Zhang, Zhen, Rommel, Philipp C, Singh, Nathan, Glastad, Karl M, Richardson, Max W, Watanabe, Keisuke, Tanyi, Janos L, O’Hara, Mark H, Ruella, Marco, Lacey, Simon F, Moon, Edmund K, Schuster, Stephen J, Albelda, Steven M, Lanier, Lewis L, Young, Regina M, Berger, Shelley L, June, Carl H (December 2021) An NK-like CAR T cell transition in CAR T cell dysfunction. Cell, 184 (25). 6081-6100.e26. ISSN 0092-8674

Goodale, Hubert Dana (March 1913) Castration in relation to the secondary sexual characters of brown leghorns. The American Naturalist, 47 (555). pp. 159-169.

Goodale, Hubert Dana, Morgan, Thomas Hunt (June 1913) Heredity of tricolor in guinea-pigs. The American Naturalist, 47 (558). pp. 321-348.

Goodwin, Daniel R, Vaughan, Alex, Leible, Daniel, Alon, Shahar, Henry, Gilbert L, Cheng, Anne, Chen, Xiaoyin, Zhang, Ruihan, Xue, Andrew G, Wassie, Asmamaw T, Sinha, Anubhav, Bando, Yosuke, Kajita, Atsushi, Marblestone, Adam H, Zador, Anthony M, Boyden, Edward S, Church, George M, Kohman, Richie E (July 2022) Expansion Sequencing of RNA Barcoded Neurons in the Mammalian Brain: Progress and Implications for Molecularly Annotated Connectomics. bioRxiv. (Submitted)

Gortner, Ross Aiken (September 1913) Studies on melanin. V: A comparison of certain nitrogen ratios in black and white wool from the same animal. Journal of the American Chemical Society, 35 (9). pp. 1262-1268.

Gortner, Ross Aiken (1913) Studies on melanin. V: A comparison of certain nitrogen ratios in black and white wool from the same animal (Abstract). The Biochemical Bulletin, 2 (8). p. 544.

Gortner, Ross Aiken (1912) Sur les pigments mélaniques d'origine animale. Bulletin de la Société Chimique de France, 4 (11). pp. 499-501.

Gortner, Ross Aiken (1912) The laboratory of biological chemistry of the Station for Experimental Evolution, Carnegie Institution of Washington. The Biochemical Bulletin, 1. pp. 567-579.

Gortner, Ross Aiken (July 1912) The misuse of the term "melanin". Science, 36 (915). pp. 52-53.

Grapotte, M, Saraswat, M, Bessière, C, Menichelli, C, Ramilowski, JA, Severin, J, Hayashizaki, Y, Itoh, M, Tagami, M, Murata, M, Kojima-Ishiyama, M, Noma, S, Noguchi, S, Kasukawa, T, Hasegawa, A, Suzuki, H, Nishiyori-Sueki, H, Frith, MC, Abugessaisa, I, Aitken, S, Aken, BL, Alam, I, Alam, T, Alasiri, R, Alhendi, AMN, Alinejad-Rokny, H, Alvarez, MJ, Andersson, R, Arakawa, T, Araki, M, Arbel, T, Archer, J, Archibald, AL, Arner, E, Arner, P, Asai, K, Ashoor, H, Astrom, G, Babina, M, Baillie, JK, Bajic, VB, Bajpai, A, Baker, S, Baldarelli, RM, Balic, A, Bansal, M, Batagov, AO, Batzoglou, S, Beckhouse, AG, Beltrami, AP, Beltrami, CA, Bertin, N, Bhattacharya, S, Bickel, PJ, Blake, JA, Blanchette, M, Bodega, B, Bonetti, A, Bono, H, Bornholdt, J, Bttcher, M, Bougouffa, S, Boyd, M, Breda, J, Brombacher, F, Brown, JB, Bult, CJ, Burroughs, AM, Burt, DW, Busch, A, Caglio, G, Califano, A, Cameron, CJ, Cannistraci, CV, Carbone, A, Carlisle, AJ, Carninci, P, Carter, KW, Cesselli, D, Chang, JC, Chen, JC, Chen, Y, Chierici, M, Christodoulou, J, Ciani, Y, Clark, EL, Coskun, M, Dalby, M, Dalla, E, Daub, CO, Davis, CA, de Hoon, MJL, de Rie, D, Denisenko, E, Deplancke, B, Detmar, M, Deviatiiarov, R, Di Bernardo, D, Diehl, AD, Dieterich, LC (June 2021) Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network. Nature Communications, 12 (1). ISSN 2041-1723 (In Press)

Greenaway, P. J., Murray, K. (March 1973) Polynucleotides associated with histone preparations. Biochem J, 131 (3). pp. 585-91.

Greider, C. W. (June 1993) Telomerase and telomere-length regulation: lessons from small eukaryotes to mammals. Cold Spring Harb Symp Quant Biol, 58. pp. 719-23. ISSN 0091-7451 (Print)

Gulko, B., Siepel, A. (December 2018) An evolutionary framework for measuring epigenomic information and estimating cell-type-specific fitness consequences. Nat Genet, 51 (2). pp. 335-342. ISSN 1061-4036

Gulko, Brad, Siepel, Adam (May 2018) How Much Information is Provided by Human Epigenomic Data? An Evolutionary View. BioRxiv. (Unpublished)

Gunner, G., Cheadle, L., Johnson, K. M., Ayata, P., Badimon, A., Mondo, E., Nagy, M. A., Liu, L., Bemiller, S. M., Kim, K. W., Lira, S. A., Lamb, B. T., Tapper, A. R., Ransohoff, R. M., Greenberg, M. E., Schaefer, A., Schafer, D. P. (July 2019) Sensory lesioning induces microglial synapse elimination via ADAM10 and fractalkine signaling. Nat Neurosci, 22 (7). pp. 1075-1088. ISSN 1097-6256 (Print)1097-6256

H

Habowski, Amber N, Budagavi, Deepthi P, Scherer, Sandra D, Aurora, Arin B, Caligiuri, Giuseppina, Flynn, William F, Langer, Ellen M, Brody, Jonathan R, Sears, Rosalie C, Foggetti, Giorgia, Arnal Estape, Anna, Nguyen, Don X, Politi, Katerina A, Shen, Xiling, Hsu, David S, Peehl, Donna M, Kurhanewicz, John, Sriram, Renuka, Suarez, Milagros, Xiao, Sophie, Du, Yuchen, Li, Xiao-Nan, Navone, Nora M, Labanca, Estefania, Willey, Christopher D (January 2024) Patient-Derived Models of Cancer in the NCI PDMC Consortium: Selection, Pitfalls, and Practical Recommendations. Cancers, 16 (3). p. 565. ISSN 2072-6694

Han, Y., Kebschull, J. M., Campbell, R. A. A., Cowan, D., Imhof, F., Zador, A. M., Mrsic-Flogel, T. D. (April 2018) The logic of single-cell projections from visual cortex. Nature, 556 (7699). pp. 51-56. ISSN 0028-0836

Hanasoge Somasundara, Amritha Varshini, Moss, Matthew A, Feigman, Mary J, Chen, Chen, Cyrill, Samantha L, Ciccone, Michael F, Trousdell, Marygrace C, Vollbrecht, Macy, Li, Siran, Kendall, Jude, Beyaz, Semir, Wilkinson, John E, Dos Santos, Camila O (December 2021) Parity-induced changes to mammary epithelial cells control NKT cell expansion and mammary oncogenesis. Cell Reports, 37 (10). p. 110099. ISSN 2211-1247

Harder, N., Bodnar, M., Eils, R., Spector, D. L., Rohr, K. (2011) 3D segmentation and quantification of mouse embryonic stem cells in fluorescence microscopy images. 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. pp. 216-219.

Harris, James Arthur (October 1916) Variation, correlation and inheritance of fertility in the mammals. The American Naturalist, 50 (598). pp. 626-636.

Harris, James Arthur (1914) The whaling vessels and the whaling industry of Cold Spring Harbor. Cold Spring Harbor Library.

Harris, Reginald Gordon, Newman, Dorothy M. (1931) A practical test for potency of extract of Corpora lutea. Science, 74 (1911). p. 182.

Harris, Benjamin D, Crow, Megan, Fischer, Stephan, Gillis, Jesse (May 2021) Single-cell co-expression analysis reveals that transcriptional modules are shared across cell types in the brain. Cell Systems. ISSN 2405-4712

Harris, Lynnea D, Regan, Michael C, Myers, Scott J, Nocilla, Kelsey A, Akins, Nicholas S, Tahirovic, Yesim A, Wilson, Lawrence J, Dingledine, Ray, Furukawa, Hiro, Traynelis, Stephen F, Liotta, Dennis C (February 2023) Novel GluN2B-Selective NMDA Receptor Negative Allosteric Modulator Possesses Intrinsic Analgesic Properties and Enhances Analgesia of Morphine in a Rodent Tail Flick Pain Model. ACS Chemical Neuroscience. ISSN 1948-7193

Hawrylycz, Michael, Martone, Maryann E, Ascoli, Giorgio A, Bjaalie, Jan G, Dong, Hong-Wei, Ghosh, Satrajit S, Gillis, Jesse, Hertzano, Ronna, Haynor, David R, Hof, Patrick R, Kim, Yongsoo, Lein, Ed, Liu, Yufeng, Miller, Jeremy A, Mitra, Partha P, Mukamel, Eran, Ng, Lydia, Osumi-Sutherland, David, Peng, Hanchuan, Ray, Patrick L, Sanchez, Raymond, Regev, Aviv, Ropelewski, Alex, Scheuermann, Richard H, Tan, Shawn Zheng Kai, Thompson, Carol L, Tickle, Timothy, Tilgner, Hagen, Varghese, Merina, Wester, Brock, White, Owen, Zeng, Hongkui, Aevermann, Brian, Allemang, David, Ament, Seth, Athey, Thomas L, Baker, Cody, Baker, Katherine S, Baker, Pamela M, Bandrowski, Anita, Banerjee, Samik, Bishwakarma, Prajal, Carr, Ambrose, Chen, Min, Choudhury, Roni, Cool, Jonah, Creasy, Heather, D'Orazi, Florence, Degatano, Kylee, Dichter, Benjamin, Ding, Song-Lin, Dolbeare, Tim, Ecker, Joseph R, Fang, Rongxin, Fillion-Robin, Jean-Christophe, Fliss, Timothy P, Gee, James, Gillespie, Tom, Gouwens, Nathan, Zhang, Guo-Qiang, Halchenko, Yaroslav O, Harris, Nomi L, Herb, Brian R, Hintiryan, Houri, Hood, Gregory, Horvath, Sam, Huo, Bingxing, Jarecka, Dorota, Jiang, Shengdian, Khajouei, Farzaneh, Kiernan, Elizabeth A, Kir, Huseyin, Kruse, Lauren, Lee, Changkyu, Lelieveldt, Boudewijn, Li, Yang, Liu, Hanqing, Liu, Lijuan, Markuhar, Anup, Mathews, James, Mathews, Kaylee L, Mezias, Chris, Miller, Michael I, Mollenkopf, Tyler, Mufti, Shoaib, Mungall, Christopher J, Orvis, Joshua, Puchades, Maja A, Qu, Lei, Receveur, Joseph P, Ren, Bing, Sjoquist, Nathan, Staats, Brian, Tward, Daniel, van Velthoven, Cindy TJ, Wang, Quanxin, Xie, Fangming, Xu, Hua, Yao, Zizhen, Yun, Zhixi, Zhang, Yun Renee, Zheng, W Jim, Zingg, Brian (June 2023) A guide to the BRAIN Initiative Cell Census Network data ecosystem. PLoS Biology, 21 (6). e3002133. ISSN 1544-9173

Hazra, Rasmani, Brine, Lily, Garcia, Libia, Benz, Brian, Chirathivat, Napon, Shen, Michael M, Wilkinson, John Erby, Lyons, Scott K, Spector, David L (November 2022) Platr4 is an early embryonic lncRNA that exerts its function downstream on cardiogenic mesodermal lineage commitment. Developmental Cell, 57 (21). 2450-2468.e7. ISSN 1534-5807

He, C., Bozler, J., Janssen, K. A., Wilusz, J. E., Garcia, B. A., Schorn, A. J., Bonasio, R. (January 2021) TET2 chemically modifies tRNAs and regulates tRNA fragment levels. Nature Structural and Molecular Biology, 28 (1). pp. 62-70. ISSN 1545-9993

He, X. Y., Ng, D., Egeblad, M. (August 2020) Gut Feelings Block the Flow: Microbiota Links Stress to Vascular Disease. Immunity, 53 (2). pp. 238-240. ISSN 1074-7613

Helfman, D. M., Kuo, J. F. (1982) A Homogeneous Cyclic Cmp Phospho Di Esterase Hydrolyzes Both Pyrimidine and Purine Cyclic 2' 3' Nucleotides and 3' 5' Nucleotides. Journal of Biological Chemistry, 257 (2). pp. 1044-1047.

Hengartner, M. O. (June 1995) Out-of body experiences: cell-free cell death. Bioessays, 17 (6). pp. 549-52. ISSN 0265-9247 (Print)

Hengartner, M. O. (1999) Programmed cell death in the nematode C. elegans. Recent Progress in Hormone Research, 54. 213-22; discussion 222. ISSN 0079-9963 (Print)

Hengartner, M. O., Bryant, J. A. (2000) Apoptotic cell death: from worms to wombats ... but what about the weeds? In: Symp Soc Exp Biol. Symposia of the Society for Experimental Biology, 52 . The Company of Biologists Limited, Cambridge, pp. 1-12. ISBN 0081-1386 (Print)

Henn, F., Brattsand, R. (1966) Some pharmacological and toxicological properties of a new long-acting local analgesic, LAC-43 (marcaine), in comparison with mepivacaine and tetracaine. Acta Anaesthesiol Scand Suppl, 21. pp. 9-30.

Henn, F. A. (1976) Neurotransmission and glial cells: a functional relationship? J Neurosci Res, 2 (4). pp. 271-82.

Henn, F. A., Anderson, D. J., Rustad, D. G. (January 1976) Glial contamination of synaptosomal fractions. Brain Res, 101 (2). pp. 341-4.

Henn, F. A., Haljamae, H., Hamberger, A. (1972) Glial cell function: active control of extracellular K + concentration. Brain Res, 43 (2). pp. 437-43.

Henn, F. A., Anderson, D. J., Sellstrom, A. (1977) Possible relationship between glial cells, dopamine and the effects of antipsychotic drugs. Nature, 266 (5603). pp. 637-8.

Henry, Samantha, Lewis, Steven Macauley, Cyrill, Samantha Leeanne, Callaway, Mackenzie Kate, Chatterjee, Deeptiman, Hanasoge Somasundara, Amritha Varshini, Jones, Gina, He, Xue-Yan, Caligiuri, Giuseppina, Ciccone, Michael Francis, Diaz, Isabella Andrea, Biswas, Amelia Aumalika, Hernandez, Evelyn, Ha, Taehoon, Wilkinson, John Erby, Egeblad, Mikala, Tuveson, David Arthur, Dos Santos, Camila Oresco (April 2024) Host response during unresolved urinary tract infection alters female mammary tissue homeostasis through collagen deposition and TIMP1. Nature Communications, 15 (1). p. 3282. ISSN 2041-1723 (Public Dataset)

Henry, Samantha, Trousdell, Marygrace C, Cyrill, Samantha L, Zhao, Yixin, Feigman, Mary J, Bouhuis, Julia M, Aylard, Dominik A, Siepel, Adam, Dos Santos, Camila O (May 2021) Characterization of Gene Expression Signatures for the Identification of Cellular Heterogeneity in the Developing Mammary Gland. Journal of Mammary Gland Biology and Neoplasia. ISSN 1083-3021

Hermansen, Erik, Klindt, David A, Dunn, Benjamin A (June 2024) Uncovering 2-D toroidal representations in grid cell ensemble activity during 1-D behavior. Nature Communications, 15 (1). p. 5429. ISSN 2041-1723

Herr, W., Sturm, R. A., Clerc, R. G., Corcoran, L. M., Baltimore, D., Sharp, P. A., Ingraham, H. A., Rosenfeld, M. G., Finney, M., Ruvkun, G. (December 1988) The POU domain: a large conserved region in the mammalian pit-1, oct-1, oct-2, and Caenorhabditis elegans unc-86 gene products. Genes Dev, 2 (12A). pp. 1513-6. ISSN 0890-9369

Herrejon Chavez, Florisela, Luo, Hanzhi, Cifani, Paolo, Pine, Alli, Chu, Karen L, Joshi, Suhasini, Barin, Ersilia, Schurer, Alexandra, Chan, Mandy, Chang, Kathryn, Han, Grace YQ, Pierson, Aspen J, Xiao, Michael, Yang, Xuejing, Kuehm, Lindsey M, Hong, Yuning, Nguyen, Diu TT, Chiosis, Gabriela, Kentsis, Alex, Leslie, Christina, Vu, Ly P, Kharas, Michael G (April 2023) RNA binding protein SYNCRIP maintains proteostasis and self-renewal of hematopoietic stem and progenitor cells. Nature Communications, 14 (1). p. 2290. ISSN 2041-1723 (Public Dataset)

Herrick, G., Delius, H., Alberts, B. (1976) Single-Stranded-DNA Structure and DNA-Polymerase Activity in Presence of Nucleic-Acid Helix-Unwinding Proteins from Calf Thymus. Journal of Biological Chemistry, 251 (7). pp. 2142-2146.

Hirokawa, J., Vaughan, A., Masset, P., Ott, T., Kepecs, A. (December 2019) Frontal cortex neuron types categorically encode single decision variables. Nature, 576 (7787). pp. 446-451. ISSN 0028-0836 (Public Dataset)

Hirschhorn, Daniel, Budhu, Sadna, Kraehenbuehl, Lukas, Gigoux, Mathieu, Schröder, David, Chow, Andrew, Ricca, Jacob M, Gasmi, Billel, De Henau, Olivier, Mangarin, Levi Mark B, Li, Yanyun, Hamadene, Linda, Flamar, Anne-Laure, Choi, Hyejin, Cortez, Czrina A, Liu, Cailian, Holland, Aliya, Schad, Sara, Schulze, Isabell, Betof Warner, Allison, Hollmann, Travis J, Arora, Arshi, Panageas, Katherine S, Rizzuto, Gabrielle A, Duhen, Rebekka, Weinberg, Andrew D, Spencer, Christine N, Ng, David, He, Xue-Yan, Albrengues, Jean, Redmond, David, Egeblad, Mikala, Wolchok, Jedd D, Merghoub, Taha (March 2023) T cell immunotherapies engage neutrophils to eliminate tumor antigen escape variants. Cell, 186 (7). 1432-1447.e17. ISSN 0092-8674 (Public Dataset)

Hitchcock, Kathryn E, Miller, Eric D, Shi, Qian, Dixon, Jesse G, Gholami, Sepideh, White, Sarah B, Wu, Christina, Goulet, Christopher C, George, Manju, Jee, Kyung-Wook, Wright, Chadwick L, Yaeger, Rona, Shergill, Ardaman, Hong, Theodore S, George, Thomas J, O'Reilly, Eileen M, Meyerhardt, Jeffrey A, Romesser, Paul B (February 2024) Alliance for clinical trials in Oncology (Alliance) trial A022101/NRG-GI009: a pragmatic randomized phase III trial evaluating total ablative therapy for patients with limited metastatic colorectal cancer: evaluating radiation, ablation, and surgery (ERASur). BMC Cancer, 24 (1). p. 201. ISSN 1471-2407

Hockfield, S., Gobel, S. (1982) An Anatomical Demonstration of Projections to the Medullary Dorsal Horn Trigeminal Nucleus Caudalis from Rostral Trigeminal Nuclei and the Contralateral Caudal Medulla. Brain Research, 252 (2). pp. 203-212.

Hon, T., Mars, K., Young, G., Tsai, Y. C., Karalius, J. W., Landolin, J. M., Maurer, N., Kudrna, D., Hardigan, M. A., Steiner, C. C., Knapp, S. J., Ware, D., Shapiro, B., Peluso, P., Rank, D. R. (November 2020) Highly accurate long-read HiFi sequencing data for five complex genomes. Sci Data, 7 (1). p. 399. ISSN 2052-4463

Horev, G., Saig, A., Knutsen, P. M., Pietr, M., Yu, C. X., Ahissar, E. (November 2011) Motor-sensory convergence in object localization: a comparative study in rats and humans. Philosophical Transactions of the Royal Society B-Biological Sciences, 366 (1581). pp. 3070-3076. ISSN 0962-8436

Hoshii, Takayuki, Cifani, Paolo, Feng, Zhaohui, Huang, Chun-Hao, Koche, Richard, Chen, Chun-Wei, Delaney, Christopher D, Lowe, Scott W, Kentsis, Alex, Armstrong, Scott A (February 2018) A Non-catalytic Function of SETD1A Regulates Cyclin K and the DNA Damage Response. Cell, 172 (5). 1007-1021.e17. ISSN 0092-8674

Hoyt, Savannah J, Storer, Jessica M, Hartley, Gabrielle A, Grady, Patrick GS, Gershman, Ariel, de Lima, Leonardo G, Limouse, Charles, Halabian, Reza, Wojenski, Luke, Rodriguez, Matias, Altemose, Nicolas, Rhie, Arang, Core, Leighton J, Gerton, Jennifer L, Makalowski, Wojciech, Olson, Daniel, Rosen, Jeb, Smit, Arian FA, Straight, Aaron F, Vollger, Mitchell R, Wheeler, Travis J, Schatz, Michael C, Eichler, Evan E, Phillippy, Adam M, Timp, Winston, Miga, Karen H, O'Neill, Rachel J (April 2022) From telomere to telomere: The transcriptional and epigenetic state of human repeat elements. Science, 376 (6588). eabk3112. ISSN 0036-8075

Hrvatin, S., Hochbaum, D. R., Nagy, M. A., Cicconet, M., Robertson, K., Cheadle, L., Zilionis, R., Ratner, A., Borges-Monroy, R., Klein, A. M., Sabatini, B. L., Greenberg, M. E. (January 2018) Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex. Nat Neurosci, 21 (1). pp. 120-129. ISSN 1097-6256 (Print)1097-6256

Hu, Jing, Sánchez-Rivera, Francisco J, Wang, Zhenghan, Johnson, Gabriela N, Ho, Yu-Jui, Ganesh, Karuna, Umeda, Shigeaki, Gan, Siting, Mujal, Adriana M, Delconte, Rebecca B, Hampton, Jessica P, Zhao, Huiyong, Kottapalli, Sanjay, de Stanchina, Elisa, Iacobuzio-Donahue, Christine A, Pe'er, Dana, Lowe, Scott W, Sun, Joseph C, Massagué, Joan (April 2023) STING inhibits the reactivation of dormant metastasis in lung adenocarcinoma. Nature, 616 (7958). pp. 806-813. ISSN 0028-0836 (Public Dataset)

Hu, Tuo, Shukla, Surendra K, Vernucci, Enza, He, Chunbo, Wang, Dezhen, King, Ryan J, Jha, Kanupriya, Siddhanta, Kasturi, Mullen, Nicholas J, Attri, Kuldeep S, Murthy, Divya, Chaika, Nina V, Thakur, Ravi, Mulder, Scott E, Pacheco, Camila G, Fu, Xiao, High, Robin R, Yu, Fang, Lazenby, Audrey, Steegborn, Clemens, Lan, Ping, Mehla, Kamiya, Rotili, Dante, Chaudhary, Sarika, Valente, Sergio, Tafani, Marco, Mai, Antonello, Auwerx, Johan, Verdin, Eric, Tuveson, David, Singh, Pankaj K (July 2021) Metabolic Rewiring by Loss of Sirt5 Promotes Kras-induced Pancreatic Cancer Progression. Gastroenterology. ISSN 0016-5085

Huang, T. H., Wu, A. T. H., Cheng, T. S., Lin, K. T., Lai, C. J., Hsieh, H. W., Chang, P. M., Wu, C. W., Huang, C. F., Chen, K. Y. (October 2019) In silico identification of thiostrepton as an inhibitor of cancer stem cell growth and an enhancer for chemotherapy in non-small-cell lung cancer. J Cell Mol Med. ISSN 1582-1838

Huang, T. H., Wu, A. T. H., Cheng, T. S., Lin, K. T., Lai, C. J., Hsieh, H. W., Chang, P. M. H., Wu, C. W., Huang, C. Y. F., Chen, K. Y. (December 2019) In silico identification of thiostrepton as an inhibitor of cancer stem cell growth and an enhancer for chemotherapy in non–small-cell lung cancer. Journal of Cellular and Molecular Medicine, 23 (12). pp. 8184-8195. ISSN 15821838 (ISSN)

Huang, Y. H., Klingbeil, O., He, X. Y., Wu, X. S., Arun, G., Lu, B., Somerville, T. D. D., Milazzo, J. P., Wilkinson, J. E., Demerdash, O. E., Spector, D. L., Egeblad, M., Shi, J., Vakoc, C. R. (July 2018) POU2F3 is a master regulator of a tuft cell-like variant of small cell lung cancer. Genes Dev, 32 (13-14). pp. 915-928. ISSN 0890-9369

Huang, Longwen, Kebschull, Justus M, Fürth, Daniel, Musall, Simon, Kaufman, Matthew T, Churchland, Anne K, Zador, Anthony M (July 2020) BRICseq Bridges Brain-wide Interregional Connectivity to Neural Activity and Gene Expression in Single Animals. Cell, 182 (1). 177-188.e27. ISSN 0092-8674

Huang, S., Deerinck, T. J., Ellisman, M. H. , Spector, D. L. (August 1994) In vivo analysis of the stability and transport of nuclear poly(A)+ RNA. Journal of Cell Biology, 126 (4). pp. 877-99. ISSN 0021-9525

Hubisz, M. J., Williams, A. L., Siepel, A. (August 2020) Mapping gene flow between ancient hominins through demography-aware inference of the ancestral recombination graph. PLoS Genet, 16 (8). e1008895. ISSN 1553-7390 (Print)1553-7390

Huilgol, Dhananjay, Levine, Jesse M, Galbavy, William, Wang, Bor-Shuen, He, Miao, Suryanarayana, Shreyas M, Huang, Z Josh (August 2023) Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex. Neuron, 111 (16). 2557-2569.e4. ISSN 0896-6273

Humpton, T. J., Alagesan, B., DeNicola, G. M., Lu, D., Yordanov, G. N., Leonhardt, C. S., Yao, M. A., Alagesan, P., Zaatari, M. N., Park, Y., Skepper, J. N., Macleod, K. F., Perez-Mancera, P. A., Murphy, M. P., Evan, G. I., Vousden, K. H., Tuveson, D. A. (July 2019) Oncogenic Kras induces Nix-mediated mitophagy to promote pancreatic cancer. Cancer Discov, 99 (9). pp. 1268-1298. ISSN 2159-8274

Hwang, I., Cao, D., Na, Y., Kim, D. Y., Zhang, T., Yao, J., Oh, H., Hu, J., Zheng, H., Yao, Y., Paik, J. (March 2018) Far Upstream Element-Binding Protein 1 Regulates LSD1 Alternative Splicing to Promote Terminal Differentiation of Neural Progenitors. Stem Cell Reports, 10 (4). pp. 1208-1221. ISSN 2213-6711 (Electronic)2213-6711 (Linking)

Hyun, Minsuk, Taranda, Julian, Radeljic, Gianna, Miner, Lauren, Wang, Wengang, Ochandarena, Nicole, Huang, Kee Wui, Osten, Pavel, Sabatini, Bernardo L (January 2021) Social isolation uncovers a circuit underlying context-dependent territory-covering micturition. Proceedings of the National Academy of Sciences of USA, 118 (1). e2018078118-e2018078118. ISSN 0027-8424

Höfling, Larissa, Szatko, Klaudia P, Behrens, Christian, Deng, Yuyao, Qiu, Yongrong, Klindt, David Alexander, Jessen, Zachary, Schwartz, Gregory W, Bethge, Matthias, Berens, Philipp, Franke, Katrin, Ecker, Alexander S, Euler, Thomas (October 2024) A chromatic feature detector in the retina signals visual context changes. eLife, 13. e86860. ISSN 2050-084X (Public Dataset)

I

International Brain Laboratory, Aguillon-Rodriguez, Valeria, Angelaki, Dora, Bayer, Hannah, Bonacchi, Niccolo, Carandini, Matteo, Cazettes, Fanny, Chapuis, Gaelle, Churchland, Anne K, Dan, Yang, Dewitt, Eric, Faulkner, Mayo, Forrest, Hamish, Haetzel, Laura, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Khanal, Anup, Krasniak, Christopher, Laranjeira, Ines, Mainen, Zachary F, Meijer, Guido, Miska, Nathaniel J, Mrsic-Flogel, Thomas D, Murakami, Masayoshi, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Rossant, Cyrille, Sanders, Joshua, Socha, Karolina, Terry, Rebecca, Urai, Anne E, Vergara, Hernando, Wells, Miles, Wilson, Christian J, Witten, Ilana B, Wool, Lauren E, Zador, Anthony M (May 2021) Standardized and reproducible measurement of decision-making in mice. eLife, 10. ISSN 2050-084X

Iossifov, I., Rodriguez-Esteban, R., Mayzus, I., Millen, K. J., Rzhetsky, A. (November 2009) Looking at Cerebellar Malformations through Text-Mined Interactomes of Mice and Humans. PLoS Comput Biol, 5 (11). e1000559.

Iyer, Shruti V, Goodwin, Sara, McCombie, William Richard (November 2024) Leveraging the power of long reads for targeted sequencing. Genome Research, 34 (11). pp. 1701-1718. ISSN 1088-9051

J

James, Ranjit Immanuel, Verma, Richa, Johnson, Latif Rajesh, Manesh, Abi, Jayakumar, Jaikishan, Sen, Mousumi, Joseph, Jayaraj, Kumarasami, Ramdayalan, Mitra, Partha P, Sivaprakasam, Mohanasankar, Varghese, George M (July 2023) A Standardized Protocol for the Safe Retrieval of Infectious Postmortem Human Brain for Studying Whole-Brain Pathology. American Journal of Forensic Medicine and Pathology. ISSN 0195-7910

Janowitz, T. (July 2018) Cancer: The Tumor-Driven Disease of the Host. Cell Metab, 28 (1). pp. 5-6. ISSN 1550-4131

Janowitz, T., Gablenz, E., Pattinson, D., Wang, T.C., Conigliaro, J., Tracey, K., Tuveson, D. (June 2020) Famotidine Use and Quantitative Symptom Tracking for COVID-19 in Non-Hospitalised Patients: A Case Series. Gut, 69 (9). pp. 1592-1597. ISSN 1468-3288

Jansen, S., van der Werf, I. M., Innes, A. M., Afenjar, A., Agrawal, P. B., Anderson, I. J., Atwal, P. S., van Binsbergen, E., van den Boogaard, M. J., Castiglia, L., Coban-Akdemir, Z. H., van Dijck, A., Doummar, D., van Eerde, A. M., van Essen, A. J., van Gassen, K. L., Guillen Sacoto, M. J., van Haelst, M. M., Iossifov, I., Jackson, J. L., Judd, E., Kaiwar, C., Keren, B., Klee, E. W., Klein Wassink-Ruiter, J. S., Meuwissen, M. E., Monaghan, K. G., de Munnik, S. A., Nava, C., Ockeloen, C. W., Pettinato, R., Racher, H., Rinne, T., Romano, C., Sanders, V. R., Schnur, R. E., Smeets, E. J., Stegmann, A. P. A., Stray-Pedersen, A., Sweetser, D. A., Terhal, P. A., Tveten, K., VanNoy, G. E., de Vries, P. F., Waxler, J. L., Willing, M., Pfundt, R., Veltman, J. A., Kooy, R. F., Vissers, Lelm, de Vries, B. B. A. (January 2019) De novo variants in FBXO11 cause a syndromic form of intellectual disability with behavioral problems and dysmorphisms. Eur J Hum Genet, 27 (5). pp. 738-746. ISSN 1018-4813

Jarvis, Erich D, Formenti, Giulio, Rhie, Arang, Guarracino, Andrea, Yang, Chentao, Wood, Jonathan, Tracey, Alan, Thibaud-Nissen, Francoise, Vollger, Mitchell R, Porubsky, David, Cheng, Haoyu, Asri, Mobin, Logsdon, Glennis A, Carnevali, Paolo, Chaisson, Mark JP, Chin, Chen-Shan, Cody, Sarah, Collins, Joanna, Ebert, Peter, Escalona, Merly, Fedrigo, Olivier, Fulton, Robert S, Fulton, Lucinda L, Garg, Shilpa, Gerton, Jennifer L, Ghurye, Jay, Granat, Anastasiya, Green, Richard E, Harvey, William, Hasenfeld, Patrick, Hastie, Alex, Haukness, Marina, Jaeger, Erich B, Jain, Miten, Kirsche, Melanie, Kolmogorov, Mikhail, Korbel, Jan O, Koren, Sergey, Korlach, Jonas, Lee, Joyce, Li, Daofeng, Lindsay, Tina, Lucas, Julian, Luo, Feng, Marschall, Tobias, Mitchell, Matthew W, McDaniel, Jennifer, Nie, Fan, Olsen, Hugh E, Olson, Nathan D, Pesout, Trevor, Potapova, Tamara, Puiu, Daniela, Regier, Allison, Ruan, Jue, Salzberg, Steven L, Sanders, Ashley D, Schatz, Michael C, Schmitt, Anthony, Schneider, Valerie A, Selvaraj, Siddarth, Shafin, Kishwar, Shumate, Alaina, Stitziel, Nathan O, Stober, Catherine, Torrance, James, Wagner, Justin, Wang, Jianxin, Wenger, Aaron, Xiao, Chuanle, Zimin, Aleksey V, Zhang, Guojie, Wang, Ting, Li, Heng, Garrison, Erik, Haussler, David, Hall, Ira, Zook, Justin M, Eichler, Evan E, Phillippy, Adam M, Paten, Benedict, Howe, Kerstin, Miga, Karen H, Human Pangenome Reference Consortium (November 2022) Semi-automated assembly of high-quality diploid human reference genomes. Nature, 611 (7936). pp. 519-531. ISSN 0028-0836

Javadzadeh, Mitra, Hofer, Sonja B (August 2022) Dynamic causal communication channels between neocortical areas. Neuron, 110 (15). 2470-2483.e7. ISSN 0896-6273

Johansen, Nelson J, Kempynck, Niklas, Zemke, Nathan R, Somasundaram, Saroja, Winter, Seppe De, Hooper, Marcus, Dwivedi, Deepanjali, Lohia, Ruchi, Wehbe, Fabien, Li, Bocheng, Abaffyová, Darina, Armand, Ethan J, Man, Julie De, Eksi, Eren Can, Hecker, Nikolai, Hulselmans, Gert, Konstantakos, Vasilis, Mauduit, David, Mich, John K, Partel, Gabriele, Daigle, Tanya L, Levi, Boaz P, Zhang, Kai, Tanaka, Yoshiaki, Gillis, Jesse, Ting, Jonathan T, Ben-Simon, Yoav, Miller, Jeremy, Ecker, Joseph R, Ren, Bing, Aerts, Stein, Lein, Ed S, Tasic, Bosiljka, Bakken, Trygve E (August 2024) Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex. bioRxiv. (Submitted)

Jones, E. Elizabeth (1922) The genetic significance of intra-uterine sex ratios and degenerating fetuses in the cat. The Journal of Heredity, 13 (5). p. 234.

Joo, Hannah R, Liang, Hexin, Chung, Jason E, Geaghan-Breiner, Charlotte, Fan, Jiang Lan, Nachman, Benjamin P, Kepecs, Adam, Frank, Loren M (August 2021) Rats use memory confidence to guide decisions. Current Biology. ISSN 0960-9822

Jorstad, Nikolas L, Close, Jennie, Johansen, Nelson, Yanny, Anna Marie, Barkan, Eliza R, Travaglini, Kyle J, Bertagnolli, Darren, Campos, Jazmin, Casper, Tamara, Crichton, Kirsten, Dee, Nick, Ding, Song-Lin, Gelfand, Emily, Goldy, Jeff, Hirschstein, Daniel, Kiick, Katelyn, Kroll, Matthew, Kunst, Michael, Lathia, Kanan, Long, Brian, Martin, Naomi, McMillen, Delissa, Pham, Trangthanh, Rimorin, Christine, Ruiz, Augustin, Shapovalova, Nadiya, Shehata, Soraya, Siletti, Kimberly, Somasundaram, Saroja, Sulc, Josef, Tieu, Michael, Torkelson, Amy, Tung, Herman, Callaway, Edward M, Hof, Patrick R, Keene, C Dirk, Levi, Boaz P, Linnarsson, Sten, Mitra, Partha P, Smith, Kimberly, Hodge, Rebecca D, Bakken, Trygve E, Lein, Ed S (October 2023) Transcriptomic cytoarchitecture reveals principles of human neocortex organization. Science, 382 (6667). eadf6812. ISSN 0036-8075

Jorstad, Nikolas L, Song, Janet HT, Exposito-Alonso, David, Suresh, Hamsini, Castro-Pacheco, Nathan, Krienen, Fenna M, Yanny, Anna Marie, Close, Jennie, Gelfand, Emily, Long, Brian, Seeman, Stephanie C, Travaglini, Kyle J, Basu, Soumyadeep, Beaudin, Marc, Bertagnolli, Darren, Crow, Megan, Ding, Song-Lin, Eggermont, Jeroen, Glandon, Alexandra, Goldy, Jeff, Kiick, Katelyn, Kroes, Thomas, McMillen, Delissa, Pham, Trangthanh, Rimorin, Christine, Siletti, Kimberly, Somasundaram, Saroja, Tieu, Michael, Torkelson, Amy, Feng, Guoping, Hopkins, William D, Höllt, Thomas, Keene, C Dirk, Linnarsson, Sten, McCarroll, Steven A, Lelieveldt, Boudewijn P, Sherwood, Chet C, Smith, Kimberly, Walsh, Christopher A, Dobin, Alexander, Gillis, Jesse, Lein, Ed S, Hodge, Rebecca D, Bakken, Trygve E (October 2023) Comparative transcriptomics reveals human-specific cortical features. Science, 382 (6667). eade9516. ISSN 0036-8075

Juavinett, A. L., Bekheet, G., Churchland, A. K. (August 2019) Chronically-implanted Neuropixels probes enable high yield recordings in freely moving mice. Elife, 8. ISSN 2050-084x (Public Dataset)

K

Karakida Kawaguchi, Risa, Tang, Ziqi, Fischer, Stephan, Rajesh, Chandana, Tripathy, Rohit, Koo, Peter K, Gillis, Jesse (December 2022) Learning single-cell chromatin accessibility profiles using meta-analytic marker genes. Briefings in Bioinformatics. bbac541. ISSN 1467-5463

Karlsson, J. O., Hamberger, A., Henn, F. A. (March 1973) Polypeptide composition of membranes derived from neuronal and glial cells. Biochim Biophys Acta, 298 (2). pp. 219-29.

Karthik, Srinivasa, Joseph, Jayaraj, Jayakumar, Jaikishan, Manoj, Rahul, Shetty, Mahesh, Bota, Mihail, Verma, Richa, Mitra, Partha, Sivaprakasam, Mohanasankar (September 2023) Wide field block face imaging using deep ultraviolet induced autofluorescence of the human brain. Journal of Neuroscience Methods, 397. p. 109921. ISSN 0165-0270

Kataoka, T., Powers, S., Cameron, S., Fasano, O., Goldfarb, M., Broach, J., Wigler, M. H. (1985) Functional homology of mammalian and yeast RAS genes. Cell, 40 (1). pp. 19-26.

Katcher, Arielle, Yueh, Brian, Ozler, Kadir, Nizam, Aaron, Kredentser, Ariel, Chung, Charlie, Frimer, Marina, Goldberg, Gary L, Beyaz, Semir (2023) Establishing patient-derived organoids from human endometrial cancer and normal endometrium. Frontiers in Endocrinology, 14. p. 1059228. ISSN 1664-2392

Keller, W., Crouch, R. (November 1972) Degradation of DNA RNA hybrids by ribonuclease H and DNA polymerases of cellular and viral origin. Proc Natl Acad Sci U S A, 69 (11). pp. 3360-4.

Khan, Omar, Giles, Josephine R, McDonald, Sierra, Manne, Sasikanth, Ngiow, Shin Foong, Patel, Kunal P, Werner, Michael T, Huang, Alexander C, Alexander, Katherine A, Wu, Jennifer E, Attanasio, John, Yan, Patrick, George, Sangeeth M, Bengsch, Bertram, Staupe, Ryan P, Donahue, Greg, Xu, Wei, Amaravadi, Ravi K, Xu, Xiaowei, Karakousis, Giorgos C, Mitchell, Tara C, Schuchter, Lynn M, Kaye, Jonathan, Berger, Shelley L, Wherry, E John (June 2019) TOX transcriptionally and epigenetically programs CD8+ T cell exhaustion. Nature, 571 (7764). pp. 211-218. ISSN 0028-0836

Kim, J., Inoue, K., Ishii, J., Vanti, W. B., Voronov, S. V., Murchison, E., Hannon, G. J., Abeliovich, A. (August 2007) A MicroRNA feedback circuit in midbrain dopamine neurons. Science, 317 (5842). pp. 1220-4. ISSN 1095-9203 (Electronic) 1095-9203 (Linking)

Kleinfeld, D., Luan, L., Mitra, P. P., Robinson, J. T., Sarpeshkar, R., Shepard, K., Xie, C., Harris, T. D. (August 2019) Can One Concurrently Record Electrical Spikes from Every Neuron in a Mammalian Brain? Neuron, 103 (6). pp. 1005-1015. ISSN 0896-6273

Kneissig, M., Keuper, K., de Pagter, M. S., van Roosmalen, M. J., Martin, J., Otto, H., Passerini, V., Campos Sparr, A., Renkens, I., Kropveld, F., Vasudevan, A., Sheltzer, J. M., Kloosterman, W. P., Storchova, Z. (November 2019) Micronuclei-based model system reveals functional consequences of chromothripsis in human cells. Elife, 8. e50292. ISSN 2050-084x (Public Dataset)

Koulakov, A. A., Gelperin, A., Rinberg, D. (December 2007) Olfactory coding with all-or-nothing glomeruli. J Neurophysiol, 98 (6). pp. 3134-42. ISSN 0022-3077 (Print)

Koulakov, A. A., Kolterman, B. E., Enikolopov, A. G., Rinberg, D. (September 2011) In search of the structure of human olfactory space. Frontiers in Systems Neuroscience, 5. p. 65. ISSN 1662-5137 (Electronic)1662-5137 (Linking)

Krause, William C, Rodriguez, Ruben, Gegenhuber, Bruno, Matharu, Navneet, Rodriguez, Andreas N, Padilla-Roger, Adriana M, Toma, Kenichi, Herber, Candice B, Correa, Stephanie M, Duan, Xin, Ahituv, Nadav, Tollkuhn, Jessica, Ingraham, Holly A (October 2021) Oestrogen engages brain MC4R signalling to drive physical activity in female mice. Nature. ISSN 0028-0836

Kressel, A. M., Tsaava, T., Levine, Y. A., Chang, E. H., Addorisio, M. E., Chang, Q., Burbach, B. J., Carnevale, D., Lembo, G., Zador, A. M., Andersson, U., Pavlov, V. A., Chavan, S. S., Tracey, K. J. (November 2020) Identification of a brainstem locus that inhibits tumor necrosis factor. Proc Natl Acad Sci U S A, 117 (47). pp. 29803-29810. ISSN 0027-8424 (Print)0027-8424

Kuderna, Lukas FK, Ulirsch, Jacob C, Rashid, Sabrina, Ameen, Mohamed, Sundaram, Laksshman, Hickey, Glenn, Cox, Anthony J, Gao, Hong, Kumar, Arvind, Aguet, Francois, Christmas, Matthew J, Clawson, Hiram, Haeussler, Maximilian, Janiak, Mareike C, Kuhlwilm, Martin, Orkin, Joseph D, Bataillon, Thomas, Manu, Shivakumara, Valenzuela, Alejandro, Bergman, Juraj, Rouselle, Marjolaine, Silva, Felipe Ennes, Agueda, Lidia, Blanc, Julie, Gut, Marta, de Vries, Dorien, Goodhead, Ian, Harris, R Alan, Raveendran, Muthuswamy, Jensen, Axel, Chuma, Idriss S, Horvath, Julie E, Hvilsom, Christina, Juan, David, Frandsen, Peter, Schraiber, Joshua G, de Melo, Fabiano R, Bertuol, Fabrício, Byrne, Hazel, Sampaio, Iracilda, Farias, Izeni, Valsecchi, João, Messias, Malu, da Silva, Maria NF, Trivedi, Mihir, Rossi, Rogerio, Hrbek, Tomas, Andriaholinirina, Nicole, Rabarivola, Clément J, Zaramody, Alphonse, Jolly, Clifford J, Phillips-Conroy, Jane, Wilkerson, Gregory, Abee, Christian, Simmons, Joe H, Fernandez-Duque, Eduardo, Kanthaswamy, Sree, Shiferaw, Fekadu, Wu, Dongdong, Zhou, Long, Shao, Yong, Zhang, Guojie, Keyyu, Julius D, Knauf, Sascha, Le, Minh D, Lizano, Esther, Merker, Stefan, Navarro, Arcadi, Nadler, Tilo, Khor, Chiea Chuen, Lee, Jessica, Tan, Patrick, Lim, Weng Khong, Kitchener, Andrew C, Zinner, Dietmar, Gut, Ivo, Melin, Amanda D, Guschanski, Katerina, Schierup, Mikkel Heide, Beck, Robin MD, Karakikes, Ioannis, Wang, Kevin C, Umapathy, Govindhaswamy, Roos, Christian, Boubli, Jean P, Siepel, Adam, Kundaje, Anshul, Paten, Benedict, Lindblad-Toh, Kerstin, Rogers, Jeffrey, Marques Bonet, Tomas, Farh, Kyle Kai-How (November 2023) Identification of constrained sequence elements across 239 primate genomes. Nature. ISSN 0028-0836

Kuhlman, S. J., McMahon, D. G. (December 2006) Encoding the ins and outs of circadian pacemaking. J Biol Rhythms, 21 (6). pp. 470-81. ISSN 0748-7304 (Print)

Kweon, Hyae Yon, Lee, Mi-Ni, Dorfel, Max, Seo, Seungwoon, Gottlieb, Leah, PaPazyan, Thomas, McTiernan, Nina, Ree, Rasmus, Bolton, David, Garcia, Andrew, Flory, Michael, Crain, Jonathan, Sebold, Alison, Lyons, Scott, Ismail, Ahmed, Marchi, Elaine, Sonn, Seong-Keun, Jeong, Se-Jin, Jeon, Sejin, Ju, Shinyeong, Conway, Simon J, Kim, Taesoo, Kim, Hyun-Seok, Lee, Cheolju, Roh, Tae-Young, Arnesen, Thomas, Marmorstein, Ronen, Oh, Gootaeg, Lyon, Gholson J (August 2021) Naa12 compensates for Naa10 in mice in the amino-terminal acetylation pathway. eLife, 10. ISSN 2050-084X

L

La Manno, Gioele, Siletti, Kimberly, Furlan, Alessandro, Gyllborg, Daniel, Vinsland, Elin, Mossi Albiach, Alejandro, Mattsson Langseth, Christoffer, Khven, Irina, Lederer, Alex R, Dratva, Lisa M, Johnsson, Anna, Nilsson, Mats, Lönnerberg, Peter, Linnarsson, Sten (July 2021) Molecular architecture of the developing mouse brain. Nature. ISSN 0028-0836

Lak, A., Hueske, E., Hirokawa, J., Masset, P., Ott, T., Urai, A. E., Donner, T.H., Carandini, M., Tonegawa, S., Uchida, N., Kepecs, A. (April 2020) Reinforcement Biases Subsequent Perceptual Decisions When Confidence Is Low: A Widespread Behavioral Phenomenon. Elife, 9 (e49834). ISSN 2050-084X

Lak, A., Okun, M., Moss, M. M., Gurnani, H., Farrell, K., Wells, M. J., Reddy, C. B., Kepecs, A., Harris, K. D., Carandini, M. (December 2019) Dopaminergic and Prefrontal Basis of Learning from Sensory Confidence and Reward Value. Neuron. ISSN 0896-6273

Langer, Henning Tim, Ramsamooj, Shakti, Dantas, Ezequiel, Murthy, Anirudh, Ahmed, Mujmmail, Ahmed, Tanvir, Hwang, Seo-Kyoung, Grover, Rahul, Pozovskiy, Rita, Liang, Roger J, Queiroz, Andre Lima, Brown, Justin C, White, Eileen P, Janowitz, Tobias, Goncalves, Marcus D (May 2024) Restoring adiponectin via rosiglitazone ameliorates tissue wasting in mice with lung cancer. Acta Physiologica. e14167. ISSN 1748-1708

Langlieb, Jonah, Sachdev, Nina S, Balderrama, Karol S, Nadaf, Naeem M, Raj, Mukund, Murray, Evan, Webber, James T, Vanderburg, Charles, Gazestani, Vahid, Tward, Daniel, Mezias, Chris, Li, Xu, Flowers, Katelyn, Cable, Dylan M, Norton, Tabitha, Mitra, Partha, Chen, Fei, Macosko, Evan Z (December 2023) The molecular cytoarchitecture of the adult mouse brain. Nature, 624 (7991). pp. 333-342. ISSN 0028-0836

Laszlovszky, T, Schlingloff, D, Hegedüs, P, Freund, T. F., Gulyás, A., Kepecs, A., Hangya, B. (June 2020) Distinct Synchronization, Cortical Coupling and Behavioral Function of Two Basal Forebrain Cholinergic Neuron Types. Nature Neuroscience, 23 (8). pp. 992-1003. ISSN 1097-6256

Lau, A. N., Li, Z., Danai, L. V., Westermark, A. M., Darnell, A. M., Ferreira, R., Gocheva, V., Sivanand, S., Lien, E. C., Sapp, K. M., Mayers, J. R., Biffi, G., Chin, C. R., Davidson, S. M., Tuveson, D. A., Jacks, T., Matheson, N. J., Yilmaz, O., Vander Heiden, M. G. (July 2020) Dissecting cell-type-specific metabolism in pancreatic ductal adenocarcinoma. Elife, 9. ISSN 2050-084x

Lau, B. Y. B., Krishnan, K., Huang, Z. J., Shea, S. D. (January 2020) Maternal experience-dependent cortical plasticity in mice is circuit- and stimulus-specific and requires MECP2. J Neurosci, 40 (7). pp. 1514-1526. ISSN 0270-6474

Laughlin, Harry Hamilton (March 1934) Racing capacity in the thoroughbred horse. Part 1: The measure of racing capacity. The Scientific Monthly, 38 (3). pp. 210-222.

Laughlin, Harry Hamilton (April 1934) Racing capacity in the thoroughbred horse. Part 2: The inheritance of racing capacity. The Scientific Monthly, 38 (4). pp. 310-321.

Laughlin, Harry Hamilton (January 1912) The inheritance of color in short horn cattle II. The American Naturalist, 46 (541). pp. 5-28.

Laughlin, Harry Hamilton (1911) The inheritance of color in short-horn cattle. The American Naturalist, 45 (540). pp. 705-742.

Laughlin, Harry Hamilton (1911) The inheritance of color in short-horn cattle. The American Naturalist, 45 (540). pp. 705-742.

Lee, B.C., Lin, M.K., Fu, Y., Hata, J., Miller, M.I., Mitra, P. P. (May 2020) Multimodal Cross-registration and Quantification of Metric Distortions in Marmoset Whole Brain Histology using Diffeomorphic Mappings. J Comp Neurol. ISSN 0021-9967

Lei, Pin-Ji, Pereira, Ethel R, Andersson, Patrik, Amoozgar, Zohreh, Van Wijnbergen, Jan Willem, O'Melia, Meghan J, Zhou, Hengbo, Chatterjee, Sampurna, Ho, William W, Posada, Jessica M, Kumar, Ashwin S, Morita, Satoru, Menzel, Lutz, Chung, Charlie, Ergin, Ilgin, Jones, Dennis, Huang, Peigen, Beyaz, Semir, Padera, Timothy P (September 2023) Cancer cell plasticity and MHC-II-mediated immune tolerance promote breast cancer metastasis to lymph nodes. Journal of Experimental Medicine, 220 (9). e20221847. ISSN 0022-1007 (Public Dataset)

Leibold, Josef, Amor, Corina, Tsanov, Kaloyan M, Ho, Yu-Jui, Sánchez-Rivera, Francisco J, Feucht, Judith, Baslan, Timour, Chen, Hsuan-An, Tian, Sha, Simon, Janelle, Wuest, Alexandra, Wilkinson, John E, Lowe, Scott W (June 2022) Somatic mouse models of gastric cancer reveal genotype-specific features of metastatic disease. bioRxiv. (Submitted)

Leibold, Josef, Tsanov, Kaloyan M, Amor, Corina, Ho, Yu-Jui, Sánchez-Rivera, Francisco J, Feucht, Judith, Baslan, Timour, Chen, Hsuan-An, Tian, Sha, Simon, Janelle, Wuest, Alexandra, Wilkinson, John E, Lowe, Scott W (January 2024) Somatic mouse models of gastric cancer reveal genotype-specific features of metastatic disease. Nature Cancer. ISSN 2662-1347

Leibold, Josef, Ruscetti, Marcus, Cao, Zhen, Ho, Yu-Jui, Baslan, Timour, Zou, Min, Abida, Wassim, Feucht, Judith, Han, Teng, Barriga, Francisco M, Tsanov, Kaloyan M, Zamechek, Leah, Kulick, Amanda, Amor, Corina, Tian, Sha, Rybczyk, Katarzyna, Salgado, Nelson R, Sánchez-Rivera, Francisco J, Watson, Philip A, de Stanchina, Elisa, Wilkinson, John E, Dow, Lukas E, Abate-Shen, Cory, Sawyers, Charles L, Lowe, Scott W (July 2020) Somatic Tissue Engineering in Mouse Models Reveals an Actionable Role for WNT Pathway Alterations in Prostate Cancer Metastasis. Cancer discovery, 10 (7). pp. 1038-1057. ISSN 2159-8290

Levinson, A., Levine, A. J., Anderson, S., Osborn, M., Rosenwirth, B., Weber, K. (1976) Relationship between Group-C Adenovirus Tumor Antigen and Adenovirus Single-Strand DNA-Binding Protein. Cell, 7 (4). pp. 575-584.

Lewis, Steven M, Callaway, Mackenzie K, Dos Santos, Camila O (November 2022) Clinical applications of 3D normal and breast cancer organoids: A review of concepts and methods. Experimental Biology and Medicine. p. 15353702221131877. ISSN 1535-3702

Li, Bin E, Li, Grace Y, Cai, Wenqing, Zhu, Qian, Seruggia, Davide, Fujiwara, Yuko, Vakoc, Christopher R, Orkin, Stuart (July 2023) In vivo CRISPR/Cas9 Screening Identifies Pbrm1 as a Regulator of Mouse Myeloid Leukemia Development. Blood Advances, 7 (18). pp. 5281-5293. ISSN 2473-9529 (Public Dataset)

Li, Jiayun, Moresco, Philip, Fearon, Douglas T (July 2024) Intratumoral NKT cell accumulation promotes antitumor immunity in pancreatic cancer. Proceedings of the National Academy of Sciences of the United States of America, 121 (29). e2403917121. ISSN 0027-8424 (Public Dataset)

Li, Zhen, Zheng, Weiling, Wang, Zhengyuan, Zeng, Zhiqiang, Zhan, Huiqing, Li, Caixia, Zhou, Li, Yan, Chuan, Spitsbergen, Jan M, Gong, Zhiyuan (March 2013) A transgenic zebrafish liver tumor model with inducible Myc expression reveals conserved Myc signatures with mammalian liver tumors. DMM Disease Models and Mechanisms, 6 (2). pp. 414-423. ISSN 1754-8403

Li, B., Piriz, J., Mirrione, M., Chung, C. H., Proulx, C. D., Schulz, D., Henn, F. A., Malinow, R. (February 2011) Synaptic potentiation onto habenula neurons in the learned helplessness model of depression. Nature, 470 (7335). 535-U125. ISSN 0028-0836

Li, Bing, An, Wenbin, Wang, Hua, Baslan, Timour, Mowla, Shoron, Krishnan, Aishwarya, Xiao, Wenbin, Koche, Richard Patrick, Liu, Ying, Cai, Sheng F, Xiao, Zhijian, Derkach, Andriy, Iacobucci, Ilaria, Mullighan, Charles G, Helin, Kristian, Lowe, Scott W, Levine, Ross L, Rampal, Raajit K (April 2022) BMP2/SMAD pathway activation in JAK2/p53-mutant Megakaryocyte/Erythroid Progenitors Promotes Leukemic Transformation. Blood. ISSN 0006-4971

Li, Jin-Jing, Lin, Xiang, Tang, Cheng, Lu, Ying-Qian, Hu, Xinde, Zuo, Erwei, Li, He, Ying, Wenqin, Sun, Yidi, Lai, Lu-Lu, Chen, Hai-Zhu, Guo, Xin-Xin, Zhang, Qi-Jie, Wu, Shuang, Zhou, Changyang, Shen, Xiaowen, Wang, Qifang, Lin, Min-Ting, Ma, Li-Xiang, Wang, Ning, Krainer, Adrian R, Shi, Linyu, Yang, Hui, Chen, Wan-Jin (January 2020) Disruption of splicing-regulatory elements using CRISPR/Cas9 to rescue spinal muscular atrophy in human iPSCs and mice. National Science Review, 7 (1). pp. 92-101. ISSN 2095-5138

Li, S., Kendall, J., Park, S., Wang, Z., Alexander, J., Moffitt, A., Ranade, N., Danyko, C., Gegenhuber, B., Fischer, S., Robinson, B. D., Lepor, H., Tollkuhn, J., Gillis, J., Brouzes, E., Krasnitz, A., Levy, D., Wigler, M. (November 2019) Copolymerization of single-cell nucleic acids into balls of acrylamide gel. Genome Res, 30 (1). pp. 49-61. ISSN 1088-9051 (Public Dataset)

Li, Xiang, Huang, Chun-Hao, Sánchez-Rivera, Francisco J, Kennedy, Margaret C, Tschaharganeh, Darjus F, Morris, John P, Montinaro, Antonella, O'Rourke, Kevin P, Banito, Ana, Wilkinson, John E, Chen, Chi-Chao, Ho, Yu-Jui, Dow, Lukas E, Tian, Sha, Luan, Wei, de Stanchina, Elisa, Zhang, Tinghu, Gray, Nathanael S, Walczak, Henning, Lowe, Scott W (April 2022) A preclinical platform for assessing antitumor effects and systemic toxicities of cancer drug targets. Proceedings of the National Academy of Sciences of USA, 119 (17). e2110557119. ISSN 0027-8424

Liao, S. C., Hsu, W. H., Huang, Z. Y., Chuang, K. L., Lin, K. T., Tseng, C. L., Tsai, T. H., Dao, A. H., Su, C. L., Huang, C. F. (December 2019) Bioactivity Evaluation of a Novel Formulated Curcumin. Nutrients, 11 (12). ISSN 2072-6643 (Public Dataset)

Lin, M. K., Takahashi, Y. S., Huo, B. X., Hanada, M., Nagashima, J., Hata, J., Tolpygo, A. S., Ram, K., Lee, B. C., Miller, M. I., Rosa, M. G., Sasaki, E., Iriki, A., Okano, H., Mitra, P. (February 2019) A high-throughput neurohistological pipeline for brain-wide mesoscale connectivity mapping of the common marmoset. Elife, 8. ISSN 2050-084x

Lin, W., Piskol, R., Tan, M. H., Li, J. B. (March 2012) Comment on "Widespread RNA and DNA sequence differences in the human transcriptome". Science, 335 (6074). 1302; author reply 1302. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Lin, J. J. (1981) Mapping Structural Proteins of Cultured-Cells by Monoclonal-Antibodies. Cold Spring Harbor Symposia on Quantitative Biology, 46. pp. 769-783.

Lin, J. J. C. (1981) Monoclonal-Antibodies against Myofibrillar Components of Rat Skeletal-Muscle Decorate the Intermediate Filaments of Cultured-Cells. Proceedings of the National Academy of Sciences of the United States of America-Biological Sciences, 78 (4). pp. 2335-2339.

Lin, J. J. C., Queally, S. A. (1981) Monoclonal-Antibody to Golgi-Associated Protein. Journal of Cell Biology, 91 (2). A390-A390.

Lin, Xun, Gaudino, Stephen J, Jang, Kyung Ku, Bahadur, Tej, Singh, Ankita, Banerjee, Anirban, Beaupre, Michael, Chu, Timothy, Wong, Hoi Tong, Kim, Chang-Kyung, Kempen, Cody, Axelrad, Jordan, Huang, Huakang, Khalid, Saba, Shah, Vyom, Eskiocak, Onur, Parks, Olivia B, Berisha, Artan, McAleer, Jeremy P, Good, Misty, Hoshino, Miko, Blumberg, Richard, Bialkowska, Agnieszka B, Gaffen, Sarah L, Kolls, Jay K, Yang, Vincent W, Beyaz, Semir, Cadwell, Ken, Kumar, Pawan (January 2022) IL-17RA-signaling in Lgr5+ intestinal stem cells induces expression of transcription factor ATOH1 to promote secretory cell lineage commitment. Immunity. ISSN 1074-7613

Lin-Shiao, Enrique, Lan, Yemin, Welzenbach, Julia, Alexander, Katherine A, Zhang, Zhen, Knapp, Michael, Mangold, Elisabeth, Sammons, Morgan, Ludwig, Kerstin U, Berger, Shelley L (May 2019) p63 establishes epithelial enhancers at critical craniofacial development genes. Science Advances, 5 (5). ISSN 2375-2548

Little, Clarence Cook (September 1919) Colour inheritance in cats, with special reference to the colours black, yellow and tortoise-shell. Journal of Genetics, 8 (4). pp. 279-290.

Little, Clarence Cook (September 1920) Note on the occurrence of a probable sex-linked lethal factor in mammals. The American Naturalist, 54 (634). pp. 457-460.

Little, Clarence Cook (May 1912) Preliminary note on the occurrence of a sex-limited character in cats. Science, 35 (907). pp. 784-785.

Little, Clarence Cook, Jones, E. Elizabeth (October 1919) The inheritance of coat color in great danes. Journal of Heredity, 10 (7). pp. 309-320.

Liu, Hao, Caballero-Florán, René N, Hergenreder, Ty, Yang, Tao, Hull, Jacob M, Pan, Geng, Li, Ruonan, Veling, Macy W, Isom, Lori L, Kwan, Kenneth Y, Huang, Z Josh, Fuerst, Peter G, Jenkins, Paul M, Ye, Bing (April 2023) DSCAM gene triplication causes excessive GABAergic synapses in the neocortex in Down syndrome mouse models. PLoS Biology, 21 (4). e3002078. ISSN 1544-9173

Liu, P. H., Shah, R. B., Li, Y., Arora, A., Ung, P. M., Raman, R., Gorbatenko, A., Kozono, S., Zhou, X. Z., Brechin, V., Barbaro, J. M., Thompson, R., White, R. M., Aguirre-Ghiso, J. A., Heymach, J. V., Lu, K. P., Silva, J. M., Panageas, K. S., Schlessinger, A., Maki, R. G., Skinner, H. D., de Stanchina, E., Sidi, S. (January 2019) An IRAK1-PIN1 signalling axis drives intrinsic tumour resistance to radiation therapy. Nat Cell Biol, 21 (2). pp. 203-213. ISSN 1465-7392

Liu, Songlei, Punthambaker, Sukanya, Iyer, Eswar PR, Ferrante, Thomas, Goodwin, Daniel, Fürth, Daniel, Pawlowski, Andrew C, Jindal, Kunal, Tam, Jenny M, Mifflin, Lauren, Alon, Shahar, Sinha, Anubhav, Wassie, Asmamaw T, Chen, Fei, Cheng, Anne, Willocq, Valerie, Meyer, Katharina, Ling, King-Hwa, Camplisson, Conor K, Kohman, Richie E, Aach, John, Lee, Je Hyuk, Yankner, Bruce A, Boyden, Edward S, Church, George M (March 2021) Barcoded oligonucleotides ligated on RNA amplified for multiplexed and parallel in situ analyses. Nucleic Acids Research. ISSN 0305-1048

Liu, Y., Li, M., Zhang, X., Lu, Y., Gong, H., Yin, J., Chen, Z., Qian, L., Yang, Y., Andolina, I. M., Shipp, S., McLoughlin, N., Tang, S., Wang, W. (August 2020) Hierarchical Representation for Chromatic Processing across Macaque V1, V2, and V4. Neuron, 108 (3). pp. 538-550. ISSN 0896-6273

Locke, Devin P, Hillier, LaDeana W, Warren, Wesley C, Worley, Kim C, Nazareth, Lynne V, Muzny, Donna M, Yang, Shiaw-Pyng, Wang, Zhengyuan, Chinwalla, Asif T, Minx, Pat, Mitreva, Makedonka, Cook, Lisa, Delehaunty, Kim D, Fronick, Catrina, Schmidt, Heather, Fulton, Lucinda A, Fulton, Robert S, Nelson, Joanne O, Magrini, Vincent, Pohl, Craig, Graves, Tina A, Markovic, Chris, Cree, Andy, Dinh, Huyen H, Hume, Jennifer, Kovar, Christie L, Fowler, Gerald R, Lunter, Gerton, Meader, Stephen, Heger, Andreas, Ponting, Chris P, Marques-Bonet, Tomas, Alkan, Can, Chen, Lin, Cheng, Ze, Kidd, Jeffrey M, Eichler, Evan E, White, Simon, Searle, Stephen, Vilella, Albert J, Chen, Yuan, Flicek, Paul, Ma, Jian, Raney, Brian, Suh, Bernard, Burhans, Richard, Herrero, Javier, Haussler, David, Faria, Rui, Fernando, Olga, Darré, Fleur, Farré, Domènec, Gazave, Elodie, Oliva, Meritxell, Navarro, Arcadi, Roberto, Roberta, Capozzi, Oronzo, Archidiacono, Nicoletta, Della Valle, Giuliano, Purgato, Stefania, Rocchi, Mariano, Konkel, Miriam K, Walker, Jerilyn A, Ullmer, Brygg, Batzer, Mark A, Smit, Arian FA, Hubley, Robert, Casola, Claudio, Schrider, Daniel R, Hahn, Matthew W, Quesada, Victor, Puente, Xose S, Ordoñez, Gonzalo R, López-Otín, Carlos, Vinar, Tomas, Brejova, Brona, Ratan, Aakrosh, Harris, Robert S, Miller, Webb, Kosiol, Carolin, Lawson, Heather A, Taliwal, Vikas, Martins, André L, Siepel, Adam, RoyChoudhury, Arindam, Ma, Xin, Degenhardt, Jeremiah, Bustamante, Carlos D, Gutenkunst, Ryan N, Mailund, Thomas, Dutheil, Julien Y, Hobolth, Asger, Schierup, Mikkel H, Ryder, Oliver A, Yoshinaga, Yuko, de Jong, Pieter J, Weinstock, George M, Rogers, Jeffrey, Mardis, Elaine R, Gibbs, Richard A, Wilson, Richard K (August 2022) Author Correction: Comparative and demographic analysis of orang-utan genomes. Nature, 608 (7924). E36. ISSN 0028-0836

Loh, Liyen, Carcy, Salomé, Krovi, Harsha S, Domenico, Joanne, Spengler, Andrea, Lin, Yong, Torres, Joshua, Palmer, William, Norman, Paul J, Stone, Matthew, Brunetti, Tonya, Meyer, Hannah V, Gapin, Laurent (December 2023) Unraveling the Phenotypic States of Human innate-like T Cells: Comparative Insights with Conventional T Cells and Mouse Models. bioRxiv. (Submitted)

Loh, Liyen, Carcy, Salomé, Krovi, Harsha S, Domenico, Joanne, Spengler, Andrea, Lin, Yong, Torres, Joshua, Prabakar, Rishvanth K, Palmer, William, Norman, Paul J, Stone, Matthew, Brunetti, Tonya, Meyer, Hannah V, Gapin, Laurent (September 2024) Unraveling the phenotypic states of human innate-like T cells: Comparative insights with conventional T cells and mouse models. Cell Reports, 43 (9). p. 114705. ISSN 2211-1247 (Public Dataset)

Lohia, Ruchi, Fox, Nathan, Gillis, Jesse (November 2022) A global high-density chromatin interaction network reveals functional long-range and trans-chromosomal relationships. Genome Biology, 23 (1). p. 238. ISSN 1474-760X

Lu, Shaina (September 2021) The replicability of spatially-resolved transcriptomics for modern neuroscience. PhD thesis, Cold Spring Harbor Laboratory.

Lu, Shaina, Ortiz, Cantin, Fürth, Daniel, Fischer, Stephan, Meletis, Konstantinos, Zador, Anthony, Gillis, Jesse (July 2021) Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain. PLoS Biology, 19 (7). e3001341. ISSN 1545-7885

Luckett, Kathleen A, Cracchiolo, Jennifer R, Krishnamoorthy, Gnana P, Leandro-Garcia, Luis Javier, Nagarajah, James, Saqcena, Mahesh, Lester, Rona, Im, Soo Y, Zhao, Zhen, Lowe, Scott W, de Stanchina, Elisa, Sherman, Eric J, Ho, Alan L, Leach, Steven D, Knauf, Jeffrey A, Fagin, James A (May 2021) Co-inhibition of SMAD and MAPK signaling enhances 124I uptake in BRAF-mutant thyroid cancers. Endocrine-Related Cancer, 28 (6). pp. 391-402. ISSN 1351-0088

Lukey, M. J., Cluntun, A. A., Katt, W. P., Lin, M. J., Druso, J. E., Ramachandran, S., Erickson, J. W., Le, H. H., Wang, Z. E., Blank, B., Greene, K. S., Cerione, R. A. (October 2019) Liver-Type Glutaminase GLS2 Is a Druggable Metabolic Node in Luminal-Subtype Breast Cancer. Cell Rep, 29 (1). 76-88 e7. ISSN 2211-1247

Luo, Y., Yang, Y., Liu, M., Wang, D., Wang, F., Bi, Y., Ji, J., Li, S., Liu, Y., Chen, R., Huang, H., Wang, X., Swidnicka-Siergiejko, A. K., Janowitz, T., Beyaz, S., Wang, G., Xu, S., Bialkowska, A. B., Luo, C. K., Pin, C. L., Liang, G., Lu, X., Wu, M., Shroyer, K. R., Wolff, R. A., Plunkett, W., Ji, B., Li, Z., Li, E., Li, X., Yang, V. W., Logsdon, C. D., Abbruzzese, J. L., Lu, W. (July 2019) Oncogenic KRAS Reduces Expression of FGF21 in Acinar Cells to Promote Pancreatic Tumorigenesis in Mice on a High-Fat Diet. Gastroenterology, 157 (5). ISSN 0016-5085

Luo, Pei X, Zakharenkov, Hannah Cortez, Torres, Lisette Y, Rios, Roberto A, Gegenhuber, Bruno, Black, Alexis M, Xu, Christine K, Minie, Vanessa A, Tran, Amy M, Tollkuhn, Jessica, Trainor, Brian C (May 2022) Oxytocin receptor behavioral effects and cell types in the bed nucleus of the stria terminalis. Hormones and Behaviour, 143. p. 105203. ISSN 0018-506X

Ly, M., Rentas, S., Vujovic, A., Wong, N., Moreira, S., Xu, J., Holzapfel, N., Bhatia, S., Tran, D., Minden, M. D., Draper, J. S., Hope, K. J. (September 2019) Diminished AHR signaling drives human acute myeloid leukemia stem cell maintenance. Cancer Res. ISSN 0008-5472

Lyon, Gholson J, Longo, Joseph, Garcia, Andrew, Inusa, Fatima, Marchi, Elaine, Shi, Daniel, Dörfel, Max, Arnesen, Thomas, Aldabe, Rafael, Lyons, Scott, Nashat, Melissa, Bolton, David (April 2023) Evaluating possible maternal effect lethality of Naa10 knockout mice, and modulation of phenotypes for embryonic and neonatal lethality by genetic background and environment. (Submitted)

Lyon, Gholson J, Longo, Joseph, Garcia, Andrew, Inusa, Fatima, Marchi, Elaine, Shi, Daniel, Dörfel, Max, Arnesen, Thomas, Aldabe, Rafael, Lyons, Scott, Nashat, Melissa A, Bolton, David (May 2024) Evaluating possible maternal effect lethality and genetic background effects in Naa10 knockout mice. PLoS ONE, 19 (5). e0301328. ISSN 1932-6203

M

MacDowell, Edwin Carleton (1914) Size inheritance in rabbits. Project Report. Carnegie Institution of Washington, Washington, D.C..

Maiorino, Laura, Shevik, Margaret, Adrover, José M, Han, Xiao, Georgas, Elias, Wilkinson, John Erby, Seidner, Harrison, Foerschner, Leonie, Tuveson, David A, Qin, Yi-Xian, Egeblad, Mikala (January 2022) Longitudinal Intravital Imaging Through Clear Silicone Windows. Journal of Visualized Experiments (179). ISSN 1940-087X

Majka, P., Bai, S., Bakola, S., Bednarek, S., Chan, J. M., Jermakow, N., Passarelli, L., Reser, D. H., Theodoni, P., Worthy, K. H., Wang, X. J., Wojcik, D. K., Mitra, P. P., Rosa, M. G. P. (February 2020) Open access resource for cellular-resolution analyses of corticocortical connectivity in the marmoset monkey. Nat Commun, 11 (1). p. 1133. ISSN 2041-1723 (Public Dataset)

Mandelbaum, G., Taranda, J., Haynes, T. M., Hochbaum, D. R., Huang, K. W., Hyun, M., Umadevi Venkataraju, K., Straub, C., Wang, W., Robertson, K., Osten, P., Sabatini, B. L. (March 2019) Distinct Cortical-Thalamic-Striatal Circuits through the Parafascicular Nucleus. Neuron, 102 (3). 636-652 e.. ISSN 0896-6273

Maniatis, T., Kee, S. G., Efstratiadis, A., Kafatos, F. C. (June 1976) Amplification and characterization of a beta-globin gene synthesized in vitro. Cell, 8 (2). pp. 163-82.

Marasco, Luciano E, Dujardin, Gwendal, Sousa-Luís, Rui, Liu, Ying Hsiu, Stigliano, Jose N, Nomakuchi, Tomoki, Proudfoot, Nick J, Krainer, Adrian R, Kornblihtt, Alberto R (June 2022) Counteracting chromatin effects of a splicing-correcting antisense oligonucleotide improves its therapeutic efficacy in spinal muscular atrophy. Cell, 185 (12). 2057-2070.e15. ISSN 0092-8674

Masset, P., Ott, T., Lak, A., Hirokawa, J., Kepecs, A. (June 2020) Behavior- And Modality-General Representation of Confidence in Orbitofrontal Cortex. Cell, 182. ISSN 0092-8674

Mathew, G., Trotman, L. C. (June 2020) Competence against insufficiency: Why are men mostly safe from a rare and deadly prostate cancer? Journal of Experimental Medicine, 217 (6). e20200087. ISSN 0022-1007

Matho, Katherine S, Huilgol, Dhananjay, Galbavy, William, He, Miao, Kim, Gukhan, An, Xu, Lu, Jiangteng, Wu, Priscilla, Di Bella, Daniela J, Shetty, Ashwin S, Palaniswamy, Ramesh, Hatfield, Joshua, Raudales, Ricardo, Narasimhan, Arun, Gamache, Eric, Levine, Jesse M, Tucciarone, Jason, Szelenyi, Eric, Harris, Julie A, Mitra, Partha P, Osten, Pavel, Arlotta, Paola, Huang, Z Josh (October 2021) Genetic dissection of the glutamatergic neuron system in cerebral cortex. Nature, 598 (7879). pp. 182-187. ISSN 0028-0836

Matlashov, M. E., Belousov, V. V., Enikolopov, G. (2014) How much H2O2 is produced by recombinant D-Amino acid oxidase in mammalian cells? Antioxidants and Redox Signaling, 20 (7). pp. 1039-1044. ISSN 15230864 (ISSN)

Matsukawa, Toshihiro, Yin, Mianmian, Baslan, Timour, Chung, Yang Jo, Cao, Dengchao, Bertoli, Ryan, Zhu, Yuelin J, Walker, Robert L, Freeland, Amy, Knudsen, Erik, Lowe, Scott W, Meltzer, Paul S, Aplan, Peter D (September 2022) Mcm2 hypomorph leads to acute leukemia or hematopoietic stem cell failure, dependent on genetic context. The FASEB Journal, 36 (9). e22430. ISSN 0892-6638

Melnikov, A., Murugan, A., Zhang, X., Tesileanu, T., Wang, L., Rogov, P., Feizi, S., Gnirke, A., Callan Jr, C. G., Kinney, J. B., Kellis, M., Lander, E. S., Mikkelsen, T. S. (March 2012) Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay. Nature Biotechnology, 30 (3). pp. 271-277. ISSN 10870156 (ISSN)

Mencia-Trinchant, Nuria, MacKay, Matthew J, Chin, Christopher, Afshinnekoo, Ebrahim, Foox, Jonathan, Meydan, Cem, Butler, Daniel, Mozsary, Christopher, Vernice, Nicholas A, Darby, Charlotte, Schatz, Michael C, Bailey, Susan M, Melnick, Ari M, Guzman, Monica L, Bolton, Kelly, Braunstein, Lior Z, Garrett-Bakelman, Francine, Levine, Ross L, Hassane, Duane C, Mason, Christopher E (December 2020) Clonal Hematopoiesis Before, During, and After Human Spaceflight. Cell Reports, 33 (10). p. 108458. ISSN 2211-1247

Merrill, Joseph R, Inguscio, Alessandra, Chung, Taemoon, Demestichas, Breanna, Garcia, Libia A, Habel, Jill, Lewis, David Y, Janowitz, Tobias, Lyons, Scott K (August 2023) Sensitive, non-immunogenic in vivo imaging of cancer metastases and immunotherapy response. Cell Stress, 7 (8). pp. 59-68. ISSN 2523-0204

Meyer, H. V., Dawes, T. J. W., Serrani, M., Bai, W., Tokarczuk, P., Cai, J., de Marvao, A., Henry, A., Lumbers, R. T., Gierten, J., Thumberger, T., Wittbrodt, J., Ware, J. S., Rueckert, D., Matthews, P. M., Prasad, S. K., Costantino, M. L., Cook, S. A., Birney, E., O'Regan, D. P. (August 2020) Genetic and functional insights into the fractal structure of the heart. Nature, 584 (7822). pp. 589-594. ISSN 0028-0836

Michalski, Kevin, Furukawa, Hiro (April 2024) Structure and function of GluN1-3A NMDA receptor excitatory glycine receptor channel. Science Advances, 10 (15). eadl5952. ISSN 2375-2548

Michalski, K., Syrjanen, J. L., Henze, E., Kumpf, J., Furukawa, H., Kawate, T. (February 2020) The cryo-EM structure of a pannexin 1 reveals unique motifs for ion selection and inhibition. Elife, 9. ISSN 2050-084x

Mikhailik, Anatoly, Michurina, Tatyana V, Dikranian, Krikor, Hearn, Stephen, Maxakov, Vladimir I, Siller, Saul S, Takemaru, Ken-Ichi, Enikolopov, Grigori, Peunova, Natalia (May 2021) nNOS regulates ciliated cell polarity, ciliary beat frequency, and directional flow in mouse trachea. Life science alliance, 4 (5). ISSN 2575-1077

Miller, F., Lazarides, E., Elias, J. (1976) Application of Immunological Probes for Contractile Proteins to Tissue-Sections. Clinical Immunology and Immunopathology, 5 (3). pp. 416-428.

Mineyeva, Olga A, Barykina, Natalia V, Bezriadnov, Dmitry V, Latushkin, Sergey T, Ryazanov, Alexander I, Unezhev, Vitaliy N, Shuvaev, Sergey A, Usova, Svetlana V, Lazutkin, Alexander A (May 2019) Suppressed neurogenesis without cognitive deficits: effects of fast neutron irradiation in mice. NeuroReport, 30 (8). pp. 538-543. ISSN 0959-4965

Mitra, Partha, Mezias, Chris, Huo, Bingxing, Bota, Mihail, Jayakumar, Jaikishan (May 2024) Establishing neuroanatomical correspondences across mouse and marmoset brain structures. Research Square. (Submitted)

Miyabayashi, Koji, Baker, Lindsey A, Deschênes, Astrid, Traub, Benno, Caligiuri, Giuseppina, Plenker, Dennis, Alagesan, Brinda, Belleau, Pascal, Li, Siran, Kendall, Jude, Jang, Gun Ho, Kawaguchi, Risa Karakida, Somerville, Tim DD, Tiriac, Hervé, Hwang, Chang-Il, Burkhart, Richard A, Roberts, Nicholas J, Wood, Laura D, Hruban, Ralph H, Gillis, Jesse, Krasnitz, Alexander, Vakoc, Christopher R, Wigler, Michael, Notta, Faiyaz, Gallinger, Steven, Park, Youngkyu, Tuveson, David A (October 2020) Intraductal Transplantation Models of Human Pancreatic Ductal Adenocarcinoma Reveal Progressive Transition of Molecular Subtypes. Cancer Discovery, 10 (10). pp. 1566-1589. ISSN 2159-8274

Mizzen, L. A., Chang, C., Garrels, J. I., Welch, W. J. (December 1989) Identification, Characterization, and Purification of 2 Mammalian Stress Proteins Present in Mitochondria, Grp-75, a Member of the Hsp-70 Family and Hsp-58, a Homolog of the Bacterial Groel Protein. Journal of Biological Chemistry, 264 (34). pp. 20664-20675. ISSN 0021-9258

Mohan, Hemanth, An, Xu, Xu, X Hermione, Kondo, Hideki, Zhao, Shengli, Matho, Katherine S, Wang, Bor-Shuen, Musall, Simon, Mitra, Partha, Huang, Z Josh (January 2023) Cortical glutamatergic projection neuron types contribute to distinct functional subnetworks. Nature Neuroscience. ISSN 1097-6256

Mohanty, A., Li, Q., Tadayon, M. A., Roberts, S. P., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A., Lipson, M. (February 2020) Reconfigurable nanophotonic silicon probes for sub-millisecond deep-brain optical stimulation. Nat Biomed Eng, 4 (2). pp. 223-231. ISSN 2157-846x (Public Dataset)

Molaro, A., Hodges, E., Fang, F., Song, Q., McCombie, W. R., Hannon, G. J., Smith, A. D. (September 2011) Sperm Methylation Profiles Reveal Features of Epigenetic Inheritance and Evolution in Primates. Cell, 146 (6). pp. 1029-1041. ISSN 0092-8674 (Public Dataset)

Moore, J. E., Purcaro, M. J., Pratt, H. E., Epstein, C. B., Shoresh, N., Adrian, J., Kawli, T., Davis, C. A., Dobin, A., Kaul, R., Halow, J., Van Nostrand, E. L., Freese, P., Gorkin, D. U., Shen, Y., He, Y., Mackiewicz, M., Pauli-Behn, F., Williams, B. A., Mortazavi, A., Keller, C. A., Zhang, X. O., Elhajjajy, S. I., Huey, J., Dickel, D. E., Snetkova, V., Wei, X., Wang, X., Rivera-Mulia, J. C., Rozowsky, J., Zhang, J., Chhetri, S. B., Zhang, J., Victorsen, A., White, K. P., Visel, A., Yeo, G. W., Burge, C. B., Lécuyer, E., Gilbert, D. M., Dekker, J., Rinn, J., Mendenhall, E. M., Ecker, J. R., Kellis, M., Klein, R. J., Noble, W. S., Kundaje, A., Guigó, R., Farnham, P. J., Cherry, J. M., Myers, R. M., Ren, B., Graveley, B. R., Gerstein, M. B., Pennacchio, L. A., Snyder, M. P., Bernstein, B. E., Wold, B., Hardison, R. C., Gingeras, T. R., Stamatoyannopoulos, J. A., Weng, Z. (July 2020) Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature, 583 (7818). pp. 699-710. ISSN 0028-0836 (Print)0028-0836

Moral, J.A., Leung, J., Rojas, L.A., Ruan, J., Zhao, J., Sethna, Z., Ramnarain, A., Gasmi, B., Gururajan, M., Redmond, D., Askan, G., Bhanot, U., Elyada, E., Park, Y., Tuveson, D. A., Gonen, M., Leach, S.D., Wolchok, J.D., DeMatteo, R. P., Merghoub, T., Balachandran, V. P. (February 2020) ILC2s Amplify PD-1 Blockade by Activating Tissue-Specific Cancer Immunity. Nature, 579 (7797). pp. 130-135. ISSN 0028-0836 (Public Dataset)

Morgan, C. C., Mc Cartney, A. M., Donoghue, M. T. A., Loughran, N. B., Spillane, C., Teeling, E. C., O'Connell, M. J. (November 2013) Molecular adaptation of telomere associated genes in mammals. BMC Evolutionary Biology, 13. p. 251. ISSN 1471-2148

Mousset, Alexandra, Lecorgne, Enora, Bourget, Isabelle, Lopez, Pascal, Jenovai, Kitti, Cherfils-Vicini, Julien, Dominici, Chloé, Rios, Géraldine, Girard-Riboulleau, Cédric, Liu, Bodu, Spector, David L, Ehmsen, Sidse, Renault, Shufang, Hego, Caroline, Mechta-Grigoriou, Fatima, Bidard, François-Clément, Terp, Mikkel Green, Egeblad, Mikala, Gaggioli, Cédric, Albrengues, Jean (April 2023) Neutrophil extracellular traps formed during chemotherapy confer treatment resistance via TGF-β activation. Cancer Cell, 41 (4). 757-775.e10. ISSN 1535-6108 (Public Dataset)

Munir, Hafsa, Jones, James O, Janowitz, Tobias, Hoffmann, Markus, Euler, Maximilien, Martins, Carla P, Welsh, Sarah J, Shields, Jacqueline D (January 2021) Stromal-driven and Amyloid β-dependent induction of neutrophil extracellular traps modulates tumor growth. Nature Communications, 12 (1). p. 683. ISSN 2041-1723

Musall, S., Kaufman, M. T., Juavinett, A. L., Gluf, S., Churchland, A. K. (October 2019) Single-trial neural dynamics are dominated by richly varied movements. Nat Neurosci, 22 (10). pp. 1677-1686. ISSN 1097-6256

Muñoz-Castañeda, Rodrigo, Zingg, Brian, Matho, Katherine S, Chen, Xiaoyin, Wang, Quanxin, Foster, Nicholas N, Li, Anan, Narasimhan, Arun, Hirokawa, Karla E, Huo, Bingxing, Bannerjee, Samik, Korobkova, Laura, Park, Chris Sin, Park, Young-Gyun, Bienkowski, Michael S, Chon, Uree, Wheeler, Diek W, Li, Xiangning, Wang, Yun, Naeemi, Maitham, Xie, Peng, Liu, Lijuan, Kelly, Kathleen, An, Xu, Attili, Sarojini M, Bowman, Ian, Bludova, Anastasiia, Cetin, Ali, Ding, Liya, Drewes, Rhonda, D'Orazi, Florence, Elowsky, Corey, Fischer, Stephan, Galbavy, William, Gao, Lei, Gillis, Jesse, Groblewski, Peter A, Gou, Lin, Hahn, Joel D, Hatfield, Joshua T, Hintiryan, Houri, Huang, Junxiang Jason, Kondo, Hideki, Kuang, Xiuli, Lesnar, Philip, Li, Xu, Li, Yaoyao, Lin, Mengkuan, Lo, Darrick, Mizrachi, Judith, Mok, Stephanie, Nicovich, Philip R, Palaniswamy, Ramesh, Palmer, Jason, Qi, Xiaoli, Shen, Elise, Sun, Yu-Chi, Tao, Huizhong W, Wakemen, Wayne, Wang, Yimin, Yao, Shenqin, Yuan, Jing, Zhan, Huiqing, Zhu, Muye, Ng, Lydia, Zhang, Li I, Lim, Byung Kook, Hawrylycz, Michael, Gong, Hui, Gee, James C, Kim, Yongsoo, Chung, Kwanghun, Yang, X William, Peng, Hanchuan, Luo, Qingming, Mitra, Partha P, Zador, Anthony M, Zeng, Hongkui, Ascoli, Giorgio A, Josh Huang, Z, Osten, Pavel, Harris, Julie A, Dong, Hong-Wei (October 2021) Cellular anatomy of the mouse primary motor cortex. Nature, 598 (7879). pp. 159-166. ISSN 0028-0836

N

Na, Feifei, Pan, Xiangyu, Chen, Jingyao, Chen, Xuelan, Wang, Manli, Chi, Pengliang, You, Liting, Zhang, Lanxin, Zhong, Ailing, Zhao, Lei, Dai, Siqi, Zhang, Mengsha, Wang, Yiyun, Wang, Bo, Zheng, Jianan, Wang, Yuying, Xu, Jing, Wang, Jian, Wu, Baohong, Chen, Mei, Liu, Hongyu, Xue, Jianxin, Huang, Meijuan, Gong, Youling, Zhu, Jiang, Zhou, Lin, Zhang, Yan, Yu, Min, Tian, Panwen, Fan, Mingyu, Lu, Zhenghao, Xue, Zhihong, Zhao, Yinglan, Yang, Hanshuo, Zhao, Chengjian, Wang, Yuan, Han, Junhong, Yang, Shengyong, Xie, Dan, Chen, Lu, Zhong, Qian, Zeng, Musheng, Lowe, Scott W, Lu, You, Liu, Yu, Wei, Yuquan, Chen, Chong (April 2022) KMT2C deficiency promotes small cell lung cancer metastasis through DNMT3A-mediated epigenetic reprogramming. Nature Cancer. ISSN 2662-1347

Nadella, Sandeep, Lieb, John G (January 2022) Minimal Change Patients Versus Obvious Chronic Pancreatitis: A Comparison of Classical Secretin Stimulation Testing Results. Pancreas, 51 (1). pp. 75-79. ISSN 0885-3177

Najafi, F., Elsayed, G. F., Cao, R., Pnevmatikakis, E., Latham, P. E., Cunningham, J. P., Churchland, A. K. (October 2019) Excitatory and Inhibitory Subnetworks Are Equally Selective during Decision-Making and Emerge Simultaneously during Learning. Neuron, 105 (1). pp. 165-179. ISSN 0896-6273 (Public Dataset)

Narasimhan, Arun, Venkataraju, Kannan Umadevi, Mizrachi, Judith, Albeanu, Dinu F, Osten, Pavel (April 2017) Oblique light-sheet tomography: fast and high resolution volumetric imaging of mouse brains. bioRxiv. (Submitted)

Nayar, Saba, Campos, Joana, Smith, Charlotte G, Iannizzotto, Valentina, Gardner, David H, Mourcin, Frédéric, Roulois, David, Turner, Jason, Sylvestre, Marvin, Asam, Saba, Glaysher, Bridget, Bowman, Simon J, Fearon, Douglas T, Filer, Andrew, Tarte, Karin, Luther, Sanjiv A, Fisher, Benjamin A, Buckley, Christopher D, Coles, Mark C, Barone, Francesca (July 2019) Immunofibroblasts are pivotal drivers of tertiary lymphoid structure formation and local pathology. Proceedings of the National Academy of Sciences of USA, 116 (27). pp. 13490-13497. ISSN 0027-8424

Nechooshtan, G., Yunusov, D., Chang, K., Gingeras, T. R. (August 2020) Processing by RNase 1 forms tRNA halves and distinct Y RNA fragments in the extracellular environment. Nucleic Acids Res, 48 (14). pp. 8035-8049. ISSN 0305-1048 (Print)0305-1048

Nielsen, Sebastian R, Strøbech, Jan E, Horton, Edward R, Jackstadt, Rene, Laitala, Anu, Bravo, Marina C, Maltese, Giorgia, Jensen, Adina RD, Reuten, Raphael, Rafaeva, Maria, Karim, Saadia A, Hwang, Chang-Il, Arnes, Luis, Tuveson, David A, Sansom, Owen J, Morton, Jennifer P, Erler, Janine T (June 2021) Suppression of tumor-associated neutrophils by lorlatinib attenuates pancreatic cancer growth and improves treatment with immune checkpoint blockade. Nature Communications, 12 (1). p. 3414. ISSN 2041-1723

Noble, Karen, Owens, Joanna, Andre, Fabrice, Bakhoum, Samuel F, Loi, Sherene, Reinhardt, Hans Christian, Tuveson, David, Swanton, Charles (January 2020) Securing the future of the clinician-scientist. Nature Cancer, 1 (2). pp. 139-141. ISSN 2662-1347

Nowak, D. G., Katsenelson, K. C., Watrud, K. E., Chen, M., Mathew, G., D'Andrea, V. D., Lee, M. F., Swamynathan, M. M., Casanova-Salas, I., Jibilian, M. C., Buckholtz, C. L., Ambrico, A. J., Pan, C. H., Wilkinson, J. E., Newton, A. C., Trotman, L. C. (May 2019) The PHLPP2 phosphatase is a druggable driver of prostate cancer progression. J Cell Biol, 218 (6). pp. 1943-1957. ISSN 0021-9525

Noyes, Helen Miller, Falk, K. George, Baumann, Emil J. (May 1926) Studies on enzyme action. XXXV: Lipase actions of extracts of tissue of rabbits at different ages. J Gen Physiol., 9 (5). pp. 651-675.

Nurk, Sergey, Koren, Sergey, Rhie, Arang, Rautiainen, Mikko, Bzikadze, Andrey V, Mikheenko, Alla, Vollger, Mitchell R, Altemose, Nicolas, Uralsky, Lev, Gershman, Ariel, Aganezov, Sergey, Hoyt, Savannah J, Diekhans, Mark, Logsdon, Glennis A, Alonge, Michael, Antonarakis, Stylianos E, Borchers, Matthew, Bouffard, Gerard G, Brooks, Shelise Y, Caldas, Gina V, Chen, Nae-Chyun, Cheng, Haoyu, Chin, Chen-Shan, Chow, William, de Lima, Leonardo G, Dishuck, Philip C, Durbin, Richard, Dvorkina, Tatiana, Fiddes, Ian T, Formenti, Giulio, Fulton, Robert S, Fungtammasan, Arkarachai, Garrison, Erik, Grady, Patrick GS, Graves-Lindsay, Tina A, Hall, Ira M, Hansen, Nancy F, Hartley, Gabrielle A, Haukness, Marina, Howe, Kerstin, Hunkapiller, Michael W, Jain, Chirag, Jain, Miten, Jarvis, Erich D, Kerpedjiev, Peter, Kirsche, Melanie, Kolmogorov, Mikhail, Korlach, Jonas, Kremitzki, Milinn, Li, Heng, Maduro, Valerie V, Marschall, Tobias, McCartney, Ann M, McDaniel, Jennifer, Miller, Danny E, Mullikin, James C, Myers, Eugene W, Olson, Nathan D, Paten, Benedict, Peluso, Paul, Pevzner, Pavel A, Porubsky, David, Potapova, Tamara, Rogaev, Evgeny I, Rosenfeld, Jeffrey A, Salzberg, Steven L, Schneider, Valerie A, Sedlazeck, Fritz J, Shafin, Kishwar, Shew, Colin J, Shumate, Alaina, Sims, Ying, Smit, Arian FA, Soto, Daniela C, Sović, Ivan, Storer, Jessica M, Streets, Aaron, Sullivan, Beth A, Thibaud-Nissen, Françoise, Torrance, James, Wagner, Justin, Walenz, Brian P, Wenger, Aaron, Wood, Jonathan MD, Xiao, Chunlin, Yan, Stephanie M, Young, Alice C, Zarate, Samantha, Surti, Urvashi, McCoy, Rajiv C, Dennis, Megan Y, Alexandrov, Ivan A, Gerton, Jennifer L, O'Neill, Rachel J, Timp, Winston, Zook, Justin M, Schatz, Michael C, Eichler, Evan E, Miga, Karen H, Phillippy, Adam M (April 2022) The complete sequence of a human genome. Science, 376 (6588). pp. 44-53. ISSN 0036-8075

Nussinovitch, I., Bergman, H., Glusman, S., Kravitz, E. A., Harriswarrick, R. M., Rahamimoff, R. (1981) Effect of Noradrenaline on Tetanic and Post-Tetanic Potentiation at the Frog and Rat Neuromuscular-Junction. Israel Journal of Medical Sciences, 17 (5). pp. 388-389.

O

Okamura, Eiichi, Tam, Oliver H, Posfai, Eszter, Li, Lingyu, Cockburn, Katie, Lee, Cheryl QE, Garner, Jodi, Rossant, Janet (November 2019) Esrrb function is required for proper primordial germ cell development in presomite stage mouse embryos. Developmental Biology, 455 (2). pp. 382-392. ISSN 0012-1606

Oni, T. E., Biffi, G., Baker, L. A., Hao, Y., Tonelli, C., Somerville, T. D. D., Deschênes, A., Belleau, P., Hwang, C. I., Sánchez-Rivera, F. J., Cox, H., Brosnan, E., Doshi, A., Lumia, R. P., Khaledi, K., Park, Y., Trotman, L. C., Lowe, S. W., Krasnitz, A., Vakoc, C. R., Tuveson, D. A. (July 2020) SOAT1 promotes mevalonate pathway dependency in pancreatic cancer. J Exp Med, 217 (9). ISSN 0022-1007

Orstad, Grace, Fort, Gabriela, Parnell, Timothy J, Jones, Alex, Stubben, Chris, Lohman, Brian, Gillis, Katherine L, Orellana, Walter, Tariq, Rushmeen, Klingbeil, Olaf, Kaestner, Klaus, Vakoc, Christopher R, Spike, Benjamin T, Snyder, Eric L (July 2022) FoxA1 and FoxA2 control growth and cellular identity in NKX2-1-positive lung adenocarcinoma. Developmental Cell. ISSN 1534-5807

Ortiz, Jenelys Ruiz, Lewis, Steven M, Ciccone, Michael, Chatterjee, Deeptiman, Henry, Samantha, Siepel, Adam, Dos Santos, Camila O (January 2024) Single-Cell Transcription Mapping of Murine and Human Mammary Organoids Responses to Female Hormones. Journal of Mammary Gland Biology and Neoplasia, 29 (1). p. 3. ISSN 1083-3021 (Public Dataset)

Osborn, M., Weber, K. (1974) Sv40 - T Antigen, a Function and Transformation. Cold Spring Harbor Symposia on Quantitative Biology, 39. pp. 267-276.

Ott, T., Nieder, A. (January 2019) Dopamine and Cognitive Control in Prefrontal Cortex. Trends Cogn Sci, 23 (3). pp. 213-234. ISSN 1364-6613

P

Paddison, P. J., Caudy, A. A., Bernstein, E., Hannon, G. J., Conklin, D. S. (2002) Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells. Genes and Development, 16 (8). pp. 948-958. ISSN 08909369 (ISSN)

Paddison, P. J., Caudy, A. A., Hannon, G. J. (2002) Stable suppression of gene expression by RNAi in mammalian cells. Proceedings of the National Academy of Sciences of the United States of America, 99 (3). pp. 1443-1448. ISSN 00278424 (ISSN)

Paffenholz, Stella V, Salvagno, Camilla, Ho, Yu-Jui, Limjoco, Matthew, Baslan, Timour, Tian, Sha, Kulick, Amanda, de Stanchina, Elisa, Wilkinson, John E, Barriga, Francisco M, Zamarin, Dmitriy, Cubillos-Ruiz, Juan R, Leibold, Josef, Lowe, Scott W (February 2022) Senescence induction dictates response to chemo- and immunotherapy in preclinical models of ovarian cancer. Proceedings of the National Academy of Sciences of USA, 119 (5). e2117754119-e2117754119. ISSN 0027-8424

Pai, E. L., Vogt, D., Clemente-Perez, A., McKinsey, G. L., Cho, F. S., Hu, J. S., Wimer, M., Paul, A., Fazel Darbandi, S., Pla, R., Nowakowski, T. J., Goodrich, L. V., Paz, J. T., Rubenstein, J. L. R. (January 2019) Mafb and c-Maf Have Prenatal Compensatory and Postnatal Antagonistic Roles in Cortical Interneuron Fate and Function. Cell Rep, 26 (5). 1157-1173.e5. ISSN 2211-1247

Pai, S., Erlich, J. C., Kopec, C., Brody, C. D. (September 2011) Minimal impairment in a rat model of duration discrimination following excitotoxic lesions of primary auditory and prefrontal cortices. Front Syst Neurosci, 5 (74). ISSN 1662-5137

Painter, Theophilus Shickel (1924) Studies in mammalian spermatogenesis. V: The chromosomes of the horse. Journal of Experimental Zoology, 39 (2). pp. 229-242.

Painter, A. A., Roberts, R. (1977) Quantification of creatine kinase isoenzymes by a radioimmunoassay. Mol Cell Biochem, 18 (2-3). pp. 63-9.

Pandey, Kiran, Bessières, Benjamin, Sheng, Susan L, Taranda, Julian, Osten, Pavel, Sandovici, Ionel, Constancia, Miguel, Alberini, Cristina M (December 2023) Neuronal activity drives IGF2 expression from pericytes to form long-term memory. Neuron, 111 (23). 3819-3836.e8. ISSN 0896-6273

Panea, C, Zhang, R, VanValkenburgh, J, Ni, M, Adler, C, Wei, Y, Ochoa, F, Schmahl, J, Tang, Y, Siao, CJ, Poueymirou, W, Espert, J, Lim, WK, Atwal, GS, Murphy, AJ, Sleeman, MA, Hovhannisyan, Z, Haxhinasto, S (July 2021) Butyrophilin-like 2 regulates site-specific adaptations of intestinal γδ intraepithelial lymphocytes. Communications Biology, 4 (1). ISSN 2399-3642 (In Press)

Passini, M. A., Bu, J., Richards, A. M., Kinnecom, C., Sardi, S. P., Stanek, L. M., Hua,  Y., Rigo, F., Matson, J., Hung, G., Kaye, E. M., Shihabuddin, L. S., Krainer, A. R., Bennett, C. F., Cheng, S. H. (March 2011) Antisense oligonucleotides delivered to the mouse CNS ameliorate symptoms of severe spinal muscular atrophy. Science Translational Medicine, 3 (72). ISSN 19466234 (ISSN)

Peng, Hanchuan, Xie, Peng, Liu, Lijuan, Kuang, Xiuli, Wang, Yimin, Qu, Lei, Gong, Hui, Jiang, Shengdian, Li, Anan, Ruan, Zongcai, Ding, Liya, Yao, Zizhen, Chen, Chao, Chen, Mengya, Daigle, Tanya L, Dalley, Rachel, Ding, Zhangcan, Duan, Yanjun, Feiner, Aaron, He, Ping, Hill, Chris, Hirokawa, Karla E, Hong, Guodong, Huang, Lei, Kebede, Sara, Kuo, Hsien-Chi, Larsen, Rachael, Lesnar, Phil, Li, Longfei, Li, Qi, Li, Xiangning, Li, Yaoyao, Li, Yuanyuan, Liu, An, Lu, Donghuan, Mok, Stephanie, Ng, Lydia, Nguyen, Thuc Nghi, Ouyang, Qiang, Pan, Jintao, Shen, Elise, Song, Yuanyuan, Sunkin, Susan M, Tasic, Bosiljka, Veldman, Matthew B, Wakeman, Wayne, Wan, Wan, Wang, Peng, Wang, Quanxin, Wang, Tao, Wang, Yaping, Xiong, Feng, Xiong, Wei, Xu, Wenjie, Ye, Min, Yin, Lulu, Yu, Yang, Yuan, Jia, Yuan, Jing, Yun, Zhixi, Zeng, Shaoqun, Zhang, Shichen, Zhao, Sujun, Zhao, Zijun, Zhou, Zhi, Huang, Z Josh, Esposito, Luke, Hawrylycz, Michael J, Sorensen, Staci A, Yang, X William, Zheng, Yefeng, Gu, Zhongze, Xie, Wei, Koch, Christof, Luo, Qingming, Harris, Julie A, Wang, Yun, Zeng, Hongkui (October 2021) Morphological diversity of single neurons in molecularly defined cell types. Nature, 598 (7879). pp. 174-181. ISSN 0028-0836

Pinto, Brendan J, O'Connor, Brian, Schatz, Michael C, Zarate, Samantha, Wilson, Melissa A (February 2023) Concerning the eXclusion in human genomics: The choice of sex chromosome representation in the human genome drastically affects number of identified variants. (Public Dataset) (Submitted)

Pirhayati, Delaram, Smith, Cameron L, Kroeger, Ryan, Navlakha, Saket, Pfaffinger, Paul, Reimer, Jacob, Arenkiel, Benjamin R, Patel, Ankit, Moss, Elizabeth H (August 2024) Dense and persistent odor representations in the olfactory bulb of awake mice. Journal of Neuroscience. e0116242024. ISSN 0270-6474

Pisano, Thomas J, Dhanerawala, Zahra M, Kislin, Mikhail, Bakshinskaya, Dariya, Engel, Esteban A, Hansen, Ethan J, Hoag, Austin T, Lee, Junuk, de Oude, Nina L, Venkataraju, Kannan Umadevi, Verpeut, Jessica L, Hoebeek, Freek E, Richardson, Ben D, Boele, Henk-Jan, Wang, Samuel S-H (September 2021) Homologous organization of cerebellar pathways to sensory, motor, and associative forebrain. Cell reports, 36 (12). p. 109721. ISSN 2211-1247

Pisupati, Sashank, Chartarifsky-Lynn, Lital, Khanal, Anup, Churchland, Anne K (January 2021) Lapses in perceptual decisions reflect exploration. eLife, 10. pp. 1-27. ISSN 2050-084X

Pollack, R., Vogel, A. (August 1973) Isolation and characterization of revertant cell lines. II. Growth control of a polyploid revertant line derived from SV40-transformed 3T3 mouse cells. J Cell Physiol, 82 (1). pp. 93-100.

Pollack, Robert, Goldman, R. (March 1973) Synthesis of infective poliovirus in BSC-1 monkey cells enucleated with cytochalasin B. Science, 179 (4076). pp. 915-6.

Ponder, Eric (1936) Solvent water in mammalian erythrocytes. Journal of Physiology, 86. p. 147.

Ponder, Eric (1937) The spherical form of the mammalian erythrocyte: III. Changes in surface area in disks and spheres. Journal of Experimental Biology, 14 (3). pp. 267-277.

Ponz-Sarvise, M., Corbo, V., Tiriac, H., Engle, D. D., Frese, K. K., Oni, T. E., Hwang, C. I., Ohlund, D., Chio, I. I. C., Baker, L. A., Filippini, D., Wright, K., Bapiro, T. E., Huang, P. S., Smith, P. D., Yu, K. H., Jodrell, D. I., Park, Y., Tuveson, D. A. (September 2019) Identification of Resistance Pathways Specific to Malignancy Using Organoid Models of Pancreatic Cancer. Clin Cancer Res, 25 (22). pp. 6742-6755. ISSN 1078-0432 (Print)1078-0432

Pouchelon, Gabrielle, Dwivedi, Deepanjali, Bollmann, Yannick, Agba, Chimuanya K, Xu, Qing, Mirow, Andrea MC, Kim, Sehyun, Qiu, Yanjie, Sevier, Elaine, Ritola, Kimberly D, Cossart, Rosa, Fishell, Gord (November 2021) The organization and development of cortical interneuron presynaptic circuits are area specific. Cell Reports, 37 (6). p. 109993. ISSN 2211-1247

Q

Qian, Yongjun, Li, Jiayun, Zhao, Shengli, Matthews, Elizabeth A, Adoff, Michael, Zhong, Weixin, An, Xu, Yeo, Michele, Park, Christine, Yang, Xiaolu, Wang, Bor-Shuen, Southwell, Derek G, Huang, Z Josh (October 2022) Programmable RNA sensing for cell monitoring and manipulation. Nature. ISSN 0028-0836

Qiu, Yijian, Stamatatos, Olivia T, Hu, Qingting, Ruiter Swain, Jed, Russo, Suzanne, Sann, Ava, Costa, Ana SH, Violante, Sara, Spector, David L, Cross, Justin R, Lukey, Michael J (August 2024) The unique catalytic properties of PSAT1 mediate metabolic adaptation to glutamine blockade. Nature Metabolism, 6 (8). pp. 1529-1548. ISSN 2522-5812 (Public Dataset)

Qiu, Yongrong, Zhao, Zhijian, Klindt, David, Kautzky, Magdalena, Szatko, Klaudia P, Schaeffel, Frank, Rifai, Katharina, Franke, Katrin, Busse, Laura, Euler, Thomas (August 2021) Natural environment statistics in the upper and lower visual field are reflected in mouse retinal specializations. Current Biology, 31 (15). 3233-3247.e6. ISSN 0960-9822

R

Ragan, T., Kadiri, L. R., Venkataraju, K. U., Bahlmann, K., Sutin, J., Taranda, J., Arganda-Carreras, I., Kim, Y., Seung, H. S., Osten, P. (March 2012) Serial two-photon tomography for automated ex vivo mouse brain imaging. Nature Methods, 9 (3). pp. 255-258. ISSN 15487091 (ISSN)

Rajurkar, Mihir, Parikh, Aparna R, Solovyov, Alexander, You, Eunae, Kulkarni, Anupriya S, Chu, Chong, Xu, Katherine H, Jaicks, Christopher, Taylor, Martin S, Wu, Connie, Alexander, Katherine A, Good, Charly R, Szabolcs, Annamaria, Gerstberger, Stefanie, Tran, Antuan V, Xu, Nova, Ebright, Richard Y, Van Seventer, Emily E, Vo, Kevin D, Tai, Eric C, Lu, Chenyue, Joseph-Chazan, Jasmin, Raabe, Michael J, Nieman, Linda T, Desai, Niyati, Arora, Kshitij S, Ligorio, Matteo, Thapar, Vishal, Cohen, Limor, Garden, Padric M, Senussi, Yasmeen, Zheng, Hui, Allen, Jill N, Blaszkowsky, Lawrence S, Clark, Jeffrey W, Goyal, Lipika, Wo, Jennifer Y, Ryan, David P, Corcoran, Ryan B, Deshpande, Vikram, Rivera, Miguel N, Aryee, Martin J, Hong, Theodore S, Berger, Shelley L, Walt, David R, Burns, Kathleen H, Park, Peter J, Greenbaum, Benjamin D, Ting, David T (June 2022) Reverse Transcriptase Inhibition Disrupts Repeat Element Life Cycle in Colorectal Cancer. Cancer Discovery, 12 (6). pp. 1462-1481. ISSN 2159-8274

Rappold, Phillip M, Vuong, Lynda, Leibold, Josef, Chakiryan, Nicholas H, Curry, Michael, Kuo, Fengshen, Sabio, Erich, Jiang, Hui, Nixon, Briana G, Liu, Ming, Berglund, Anders E, Silagy, Andrew W, Mascareno, Eduardo A, Golkaram, Mahdi, Marker, Mahtab, Reising, Albert, Savchenko, Alexander, Millholland, John, Chen, Ying-Bei, Russo, Paul, Coleman, Jonathan, Reznik, Ed, Manley, Brandon J, Ostrovnaya, Irina, Makarov, Vladimir, DiNatale, Renzo G, Blum, Kyle A, Ma, Xiaoxiao, Chowell, Diego, Li, Ming O, Solit, David B, Lowe, Scott W, Chan, Timothy A, Motzer, Robert J, Voss, Martin H, Hakimi, A Ari (October 2022) A Targetable Myeloid Inflammatory State Governs Disease Recurrence in Clear-Cell Renal Cell Carcinoma. Cancer Discovery, 12 (10). pp. 2308-2329. ISSN 2159-8274

Ray, S. S., Sengupta, R., Tiso, M., Haque, M. M., Sahoo, R., Konas, D. W., Aulak, K., Regulski, M. R., Tully, T., Stuehr, D. J., Ghosh, S. (October 2007) Reductase Domain of Drosophila melanogaster Nitric-Oxide Synthase: Redox Transformations, Regulation, and Similarity to Mammalian Homologues. Biochemistry, 46 (42). pp. 11865-11873. ISSN 0006-2960 (Print)

Ray, S. S., Tejero, J., Wang, Z. Q., Dutta, T., Bhattacharjee, A., Regulski, M. R., Tully, T., Ghosh, S., Stuehr, D. J. (October 2007) Oxygenase Domain of Drosophila melanogaster Nitric Oxide Synthase: Unique Kinetic Parameters Enable a More Efficient NO Release. Biochemistry, 46 (42). pp. 11857-11864. ISSN 0006-2960 (Print)

Regan, M. C., Zhu, Z., Yuan, H., Myers, S. J., Menaldino, D. S., Tahirovic, Y. A., Liotta, D. C., Traynelis, S. F., Furukawa, H. (January 2019) Structural elements of a pH-sensitive inhibitor binding site in NMDA receptors. Nat Commun, 10 (1). p. 321. ISSN 2041-1723

Rein, B., Tan, T., Yang, F., Wang, W., Williams, J., Zhang, F., Mills, A., Yan, Z. (February 2020) Reversal of Synaptic and Behavioral Deficits in a 16p11.2 Duplication Mouse Model via Restoration of the GABA Synapse Regulator Npas4. Mol Psychiatry. ISSN 1359-4184

Ren, Zuen, Liang, Huizhi, Galbo, Phillip M, Dharmaratne, Malindrie, Kulkarni, Ameya S, Fard, Atefeh Taherian, Aoun, Marie Louise, Martinez-Lopez, Nuria, Suyama, Kimita, Benard, Outhiriaradjou, Zheng, Wei, Liu, Yang, Albanese, Joseph, Zheng, Deyou, Mar, Jessica C, Singh, Rajat, Prystowsky, Michael B, Norton, Larry, Hazan, Rachel B (February 2022) Redox signaling by glutathione peroxidase 2 links vascular modulation to metabolic plasticity of breast cancer. Proceedings of the National Academy of Sciences of USA, 119 (8). e2107266119-e2107266119. ISSN 0027-8424

Renton, Angela I, Dao, Thuy T, Johnstone, Tom, Civier, Oren, Sullivan, Ryan P, White, David J, Lyons, Paris, Slade, Benjamin M, Abbott, David F, Amos, Toluwani J, Bollmann, Saskia, Botting, Andy, Campbell, Megan EJ, Chang, Jeryn, Close, Thomas G, Doerig, Monika, Eckstein, Korbinian, Egan, Gary F, Evas, Stefanie, Flandin, Guillaume, Garner, Kelly G, Garrido, Marta I, Ghosh, Satrajit S, Grignard, Martin, Halchenko, Yaroslav O, Hannan, Anthony J, Heinsfeld, Anibal S, Huber, Laurentius, Hughes, Matthew E, Kaczmarzyk, Jakub R, Kasper, Lars, Kuhlmann, Levin, Lou, Kexin, Mantilla-Ramos, Yorguin-Jose, Mattingley, Jason B, Meier, Michael L, Morris, Jo, Narayanan, Akshaiy, Pestilli, Franco, Puce, Aina, Ribeiro, Fernanda L, Rogasch, Nigel C, Rorden, Chris, Schira, Mark M, Shaw, Thomas B, Sowman, Paul F, Spitz, Gershon, Stewart, Ashley W, Ye, Xincheng, Zhu, Judy D, Narayanan, Aswin, Bollmann, Steffen (May 2024) Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature Methods, 21 (2). pp. 804-808. ISSN 1548-7091

Revia, Steffie, Seretny, Agnieszka, Wendler, Lena, Banito, Ana, Eckert, Christoph, Breuer, Kersten, Mayakonda, Anand, Lutsik, Pavlo, Evert, Matthias, Ribback, Silvia, Gallage, Suchira, Chikh Bakri, Ismaiel, Breuhahn, Kai, Schirmacher, Peter, Heinrich, Stefan, Gaida, Matthias M, Heikenwälder, Mathias, Calvisi, Diego F, Plass, Christoph, Lowe, Scott W, Tschaharganeh, Darjus F (August 2022) Histone H3K27 demethylase KDM6A is an epigenetic gatekeeper of mTORC1 signalling in cancer. Gut, 71 (8). pp. 1613-1628. ISSN 0017-5749

Rey-Suarez, Ivan, Wheatley, Brittany A, Koo, Peter, Bhanja, Anshuman, Shu, Zhou, Mochrie, Simon, Song, Wenxia, Shroff, Hari, Upadhyaya, Arpita (January 2020) WASP family proteins regulate the mobility of the B cell receptor during signaling activation. Nature Communications, 11 (1). p. 439. ISSN 2041-1723

Riabowol, K., Draetta, G., Brizuela, L., Vandre, D., Beach, D. (May 1989) The cdc2 kinase is a nuclear protein that is essential for mitosis in mammalian cells. Cell, 57 (3). pp. 393-401. ISSN 0092-8674

Riabowol, K. T., Mizzen, L. A., Welch, W. J. (October 1988) Heat shock is lethal to fibroblasts microinjected with antibodies against hsp70. Science, 242 (4877). pp. 433-6. ISSN 0036-8075

Richter, Maurice N., MacDowell, Edwin Carleton (October 1935) Experiments with mammalian leukemia. Physiological Reviews, 15 (4). pp. 509-524.

Riddle, Oscar (March 1927) Some aspects of sexual difference in prenatal growth and death. The American Naturalist, 61 (673). pp. 97-112.

Riddle, Oscar, Bates, Robert Wesley, Lahr, Ernest L., Moran, Clarence S. (June 1936) On the identity of the hormone causing ovulation in the rabbit (Abstract). The American Journal of Physiology, 116 (1). pp. 128-129.

Ritzman, Ernest George, Davenport, Charles Benedict (July 1917) Family performance as a basis for selections in sheep. Journal of Agricultural Research, 10 (2). pp. 93-97.

Ritzman, Ernest George, Davenport, Charles Benedict (1931) Some results of inbreeding on fecundity and on growth in sheep. Technical Report. University of New Hampshire, Durham, N.H..

Roux de Bézieux, Hector, Street, Kelly, Fischer, Stephan, Van den Berge, Koen, Chance, Rebecca, Risso, Davide, Gillis, Jesse, Ngai, John, Purdom, Elizabeth, Dudoit, Sandrine (May 2024) Improving replicability in single-cell RNA-Seq cell type discovery with Dune. BMC Bioinformatics, 25 (1). p. 198. ISSN 1471-2105 (Public Dataset)

Rudin, C. M., Poirier, J. T., Byers, L. A., Dive, C., Dowlati, A., George, J., Heymach, J. V., Johnson, J. E., Lehman, J. M., MacPherson, D., Massion, P. P., Minna, J. D., Oliver, T. G., Quaranta, V., Sage, J., Thomas, R. K., Vakoc, C. R., Gazdar, A. F. (March 2019) Molecular subtypes of small cell lung cancer: a synthesis of human and mouse model data. Nat Rev Cancer, 19 (5). pp. 289-297. ISSN 1474-175x

Rupert, Deborah D, Pagliaro, Alexa, Choe, Jane, Shea, Stephen D (August 2023) Selective deletion of Methyl CpG binding protein 2 from parvalbumin interneurons in the auditory cortex delays the onset of maternal retrieval in mice. The Journal of Neuroscience. JN-RM-0838-23. ISSN 0270-6474

S

Saxena, S., Kinsella, I., Musall, S., Kim, S.H., Meszaros, J., Thibodeaux, D.N., Kim, C., Cunningham, J., Hillman, E.M.C., Churchland, A., Paninski, L. (April 2020) Localized Semi-Nonnegative Matrix Factorization (LocaNMF) of Widefield Calcium Imaging Data. PLoS Comput Biol, 16 (4). e1007791. ISSN 1553-734x

Scheben, Armin, Mendivil Ramos, Olivia, Kramer, Melissa, Goodwin, Sara, Oppenheim, Sara, Becker, Daniel J, Schatz, Michael C, Simmons, Nancy B, Siepel, Adam, McCombie, W Richard (September 2023) Long-Read Sequencing Reveals Rapid Evolution of Immunity- and Cancer-Related Genes in Bats. Genome Biology and Evolution, 15 (9). ISSN 1759-6653 (Public Dataset)

Scheinfeldt, L. B., Soi, S., Lambert, C., Ko, W. Y., Coulibaly, A., Ranciaro, A., Thompson, S., Hirbo, J., Beggs, W., Ibrahim, M., Nyambo, T., Omar, S., Woldemeskel, D., Belay, G., Froment, A., Kim, J., Tishkoff, S. A. (March 2019) Genomic evidence for shared common ancestry of East African hunting-gathering populations and insights into local adaptation. Proc Natl Acad Sci U S A, 116 (10). pp. 4166-4175. ISSN 0027-8424

Schmack, K, Bosc, M, Ott, T, Sturgill, JF, Kepecs, A (April 2021) Striatal dopamine mediates hallucination-like perception in mice. Science, 372 (6537). eabf4740-eabf4740. ISSN 0036-8075

Secher, D. S., Gesteland, R. F., Milstein, C. (1975) Messenger Ribonucleic-Acids from Mutant Myeloma Cells. Biochemical Society Transactions, 3 (6). pp. 873-875.

Seger, Y. R., García-Cao, M., Piccinin, S., Lo Cunsolo, C., Doglioni, C., Blasco, M. A., Hannon, G. J., Maestro, R. (2002) Transformation of normal human cells in the absence of telomerase activation. Cancer Cell, 2 (5). pp. 401-413. ISSN 15356108 (ISSN)

Segovia, Danilo, Adams, Dexter W, Hoffman, Nickolas, Safaric Tepes, Polona, Wee, Tse-Luen, Cifani, Paolo, Joshua-Tor, Leemor, Krainer, Adrian R (May 2024) SRSF1 interactome determined by proximity labeling reveals direct interaction with spliceosomal RNA helicase DDX23. Proceedings of the National Academy of Sciences of the United States of America, 121 (21). e2322974121. ISSN 0027-8424 (Public Dataset)

Shaashua, Lee, Ben-Shmuel, Aviad, Pevsner-Fischer, Meirav, Friedman, Gil, Levi-Galibov, Oshrat, Nandakumar, Subhiksha, Barki, Debra, Nevo, Reinat, Brown, Lauren E, Zhang, Wenhan, Stein, Yaniv, Lior, Chen, Kim, Han Sang, Bojmar, Linda, Jarnagin, William R, Lecomte, Nicolas, Mayer, Shimrit, Stok, Roni, Bishara, Hend, Hamodi, Rawand, Levy-Lahad, Ephrat, Golan, Talia, Porco, John A, Iacobuzio-Donahue, Christine A, Schultz, Nikolaus, Tuveson, David A, Lyden, David, Kelsen, David, Scherz-Shouval, Ruth (October 2022) BRCA mutational status shapes the stromal microenvironment of pancreatic cancer linking clusterin expression in cancer associated fibroblasts with HSF1 signaling. Nature Communications, 13 (1). p. 6513. ISSN 2041-1723

Shakiba, Mojdeh, Zumbo, Paul, Espinosa-Carrasco, Gabriel, Menocal, Laura, Dündar, Friederike, Carson, Sandra E, Bruno, Emmanuel M, Sanchez-Rivera, Francisco J, Lowe, Scott W, Camara, Steven, Koche, Richard P, Reuter, Vincent P, Socci, Nicholas D, Whitlock, Benjamin, Tamzalit, Fella, Huse, Morgan, Hellmann, Matthew D, Wells, Daniel K, Defranoux, Nadine A, Betel, Doron, Philip, Mary, Schietinger, Andrea (February 2022) TCR signal strength defines distinct mechanisms of T cell dysfunction and cancer evasion. Journal of Experimental Medicine, 219 (2). ISSN 0022-1007

Shav-Tal, Y., Darzacq, X., Shenoy, S. M., Fusco, D., Janicki, S. M., Spector, D. L., Singer, R. H. (June 2004) Dynamics of single mRNPs in nuclei of living cells. Science, 304 (5678). pp. 1797-1800. ISSN 0036-8075

Sheng, L., Rigo, F., Bennett, C. F., Krainer, A. R., Hua, Y. (April 2020) Comparison of the Efficacy of MOE and PMO Modifications of Systemic Antisense Oligonucleotides in a Severe SMA Mouse Model. Nucleic Acids Research, 6 (48). pp. 2853-2865. ISSN 0305-1048 (Public Dataset)

Sher, Falak, Hossain, Mir, Seruggia, Davide, Schoonenberg, Vivien AC, Yao, Qiuming, Cifani, Paolo, Dassama, Laura MK, Cole, Mitchel A, Ren, Chunyan, Vinjamur, Divya S, Macias-Trevino, Claudio, Luk, Kevin, McGuckin, Connor, Schupp, Patrick G, Canver, Matthew C, Kurita, Ryo, Nakamura, Yukio, Fujiwara, Yuko, Wolfe, Scot A, Pinello, Luca, Maeda, Takahiro, Kentsis, Alex, Orkin, Stuart H, Bauer, Daniel E (July 2019) Rational targeting of a NuRD subcomplex guided by comprehensive in situ mutagenesis. Nature Genetics, 51 (7). pp. 1149-1159. ISSN 1061-4036

Shi, Xi, Lu, Congyi, Corman, Alba, Nikish, Alexandra, Zhou, Yang, Platt, Randy J, Iossifov, Ivan, Zhang, Feng, Pan, Jen Q, Sanjana, Neville E (October 2023) Heterozygous deletion of the autism-associated gene CHD8 impairs synaptic function through widespread changes in gene expression and chromatin compaction. American Journal of Human Genetics, 110 (10). pp. 1750-1768. ISSN 0002-9297 (Public Dataset)

Shi, Yan-Liang, Steinmetz, Nicholas A, Moore, Tirin, Boahen, Kwabena, Engel, Tatiana A (January 2022) Cortical state dynamics and selective attention define the spatial pattern of correlated variability in neocortex. Nature Communications, 13 (1). p. 44. ISSN 2041-1723

Shrestha, Padmina, Jaganathan, Anbalagan, Huilgol, Dhananjay, Ballon, Carlos, Hwangbo, Yon, Mills, Alea A (January 2023) Chd5 regulates the transcription factor Six3 to promote neuronal differentiation. Stem Cells. sxad002. ISSN 1066-5099 (Public Dataset)

Shuvaev, Sergey, Giaffar, Hamza, Koulakov, Alexei A (December 2017) Representations of Sound in Deep Learning of Audio Features from Music. arXiv. (Submitted)

Shuvaev, Sergey, Lachi, Divyansha, Koulakov, Alexei, Zador, Anthony (September 2024) Encoding innate ability through a genomic bottleneck. Proceedings of the National Academy of Sciences of the United States of America, 121 (38). e2409160121. ISSN 0027-8424

Shuvaev, Sergey, Lazutkin, Alexander, Kiryanov, Roman, Anokhin, Konstantin, Enikolopov, Grigori, Koulakov, Alexei A (March 2022) Spatiotemporal 3D image registration for mesoscale studies of brain development. Scientific Reports, 12 (1). p. 3648. ISSN 2045-2322

Silva, Talita M, Borniger, Jeremy C, Alves, Michele Joana, Alzate Correa, Diego, Zhao, Jing, Fadda, Paolo, Toland, Amanda Ewart, Takakura, Ana C, Moreira, Thiago S, Czeisler, Catherine M, Otero, José Javier (April 2021) Machine learning approaches reveal subtle differences in breathing and sleep fragmentation in Phox2b-derived astrocytes ablated mice. Journal of Neurophysiology, 125 (4). pp. 1164-1179. ISSN 0022-3077

Sindhwani, S., Syed, A.M., Ngai, J., Kingston, B.R., Maiorino, L., Rothschild, J., MacMillan, P., Zhang, Y., Rajesh, N.U., Hoang, T., Wu, J.L.Y., Wilhelm, S., Zilman, A., Gadde, S., Sulaiman, A., Ouyang, B., Lin, Z., Wang, L., Egeblad, M., Chan, W.C.W. (January 2020) The entry of nanoparticles into solid tumours. Nat Mater. ISSN 1476-1122 (Public Dataset)

Smith, J.C., Sausville, E. L., Girish, V., Yuan, M.L., Vasudevan, A., John, K.M., Sheltzer, J. M. (May 2020) Cigarette Smoke Exposure and Inflammatory Signaling Increase the Expression of the SARS-CoV-2 Receptor ACE2 in the Respiratory Tract. Dev Cell, 53 (5). 514-529.e3. ISSN 1534-5807

Smith, Joan C, Sheltzer, Jason M (March 2022) Genome-wide identification and analysis of prognostic features in human cancers. Cell Reports, 38 (13). p. 110569. ISSN 2211-1247

Snyder, M. P., Gingeras, T. R., Moore, J. E., Weng, Z., Gerstein, M. B., Ren, B., Hardison, R. C., Stamatoyannopoulos, J. A., Graveley, B. R., Feingold, E. A., Pazin, M. J., Pagan, M., Gilchrist, D. A., Hitz, B. C., Cherry, J. M., Bernstein, B. E., Mendenhall, E. M., Zerbino, D. R., Frankish, A., Flicek, P., Myers, R. M. (July 2020) Perspectives on ENCODE. Nature, 583 (7818). pp. 693-698. ISSN 0028-0836 (Print)0028-0836

Soderlund, H., Pettersson, U., Vennstrom, B., Philipson, L., Mathews, M. B. (1976) New Species of Virus-Coded Low-Molecular Weight Rna from Cells Infected with Adenovirus Type-2. Cell, 7 (4). pp. 585-593.

Somerville, T. D. D., Biffi, G., DaBler-Plenker, J., Hur, S.K., He, X.-Y., Vance, K.E., Miyabayashi, K., Xu, Y., Maia-Silva, D., Klingbeil, O., Demerdash, O. E., Preall, J. B., Hollingsworth, M. A., Egeblad, M., Tuveson, D. A., Vakoc, C. R. (April 2020) Squamous trans-differentiation of pancreatic cancer cells promotes stromal inflammation. Elife, 9. e53381. ISSN 2050-084x (Public Dataset)

Somerville, T. D. D., Xu, Y., Wu, X. S., Maia-Silva, D., Hur, S. K., de Almeida, L. M. N., Preall, J. B., Koo, P. K., Vakoc, C. R. (May 2020) ZBED2 is an antagonist of interferon regulatory factor 1 and modifies cell identity in pancreatic cancer. Proc Natl Acad Sci U S A, 117 (21). pp. 11471-11482. ISSN 0027-8424 (Print)0027-8424

Song, Dongyan, Adrover, Jose M, Felice, Christy, Christensen, Lisa N, He, Xue-Yan, Merrill, Joseph R, Wilkinson, John E, Janowitz, Tobias, Lyons, Scott K, Egeblad, Mikala, Tonks, Nicholas K (July 2022) PTP1B inhibitors protect against acute lung injury and regulate CXCR4 signaling in neutrophils. JCI Insight, 7 (14). e158199. ISSN 2379-3708

Soto-Feliciano, Yadira M, Sánchez-Rivera, Francisco J, Perner, Florian, Barrows, Douglas W, Kastenhuber, Edward R, Ho, Yu-Jui, Carroll, Thomas, Xiong, Yijun, Anand, Disha, Soshnev, Alexey A, Gates, Leah, Beytagh, Mary Clare, Cheon, David, Gu, Shengqing, Liu, X Shirley, Krivtsov, Andrei V, Meneses, Maximiliano, de Stanchina, Elisa, Stone, Richard M, Armstrong, Scott A, Lowe, Scott W, Allis, C David (January 2023) A Molecular Switch between Mammalian MLL Complexes Dictates Response to Menin-MLL Inhibition. Cancer Discovery, 13 (1). pp. 146-169. ISSN 2159-8274

Spector, D. L., Goldman, R. D. (November 2010) Transfection of mammalian cells with fluorescent protein fusions. Cold Spring Harbor Protocols, 2010 (11). ISSN 1559-6095

Srinivasan, Shyam, Daste, Simon, Modi, Mehrab N, Turner, Glenn C, Fleischmann, Alexander, Navlakha, Saket (October 2023) Effects of stochastic coding on olfactory discrimination in flies and mice. PLoS Biology, 21 (10). e3002206. ISSN 1545-7885

Steele, Nina G, Biffi, Giulia, Kemp, Samantha B, Zhang, Yaqing, Drouillard, Donovan, Syu, LiJyun, Hao, Yuan, Oni, Tobiloba E, Brosnan, Erin, Elyada, Ela, Doshi, Abhishek, Hansma, Christa, Espinoza, Carlos, Abbas, Ahmed, The, Stephanie, Irizarry-Negron, Valerie, Halbrook, Christopher J, Franks, Nicole E, Hoffman, Megan T, Brown, Kristee, Carpenter, Eileen S, Nwosu, Zeribe C, Johnson, Craig, Lima, Fatima, Anderson, Michelle A, Park, Youngkyu, Crawford, Howard C, Lyssiotis, Costas A, Frankel, Timothy L, Rao, Arvind, Bednar, Filip, Dlugosz, Andrzej A, Preall, Jonathan B, Tuveson, David A, Allen, Benjamin L, Pasca di Magliano, Marina (April 2021) Inhibition of Hedgehog Signaling Alters Fibroblast Composition in Pancreatic Cancer. Clinical Cancer Research, 27 (7). pp. 2023-2037. ISSN 1078-0432

Stefanski, Heather E, Xing, Yan, Nicholls, Jemma, Jonart, Leslie, Goren, Emily, Taylor, Patricia A, Mills, Alea A, Riddle, Megan, McGrath, John, Tolar, Jakub, Hollander, Georg A, Blazar, Bruce R (January 2022) P63 targeted deletion under the FOXN1 promoter disrupts pre-and post-natal thymus development, function and maintenance as well as induces severe hair loss. PLoS One, 17 (1). ISSN 1932-6203

Stephenson-Jones, M., Bravo-Rivera, C., Ahrens, S., Furlan, A., Xiao, X., Fernandes-Henriques, C., Li, B. (January 2020) Opposing Contributions of GABAergic and Glutamatergic Ventral Pallidal Neurons to Motivational Behaviors. Neuron. ISSN 0896-6273

Sturm, R. A., Herr, W. (December 1988) The POU domain is a bipartite DNA-binding structure. Nature, 336 (6199). pp. 601-4. ISSN 0028-0836

Sugden, B., Keller, W. (1973) Mammalian Deoxyribonucleic Acid-Dependent Ribonucleic-Acid Polymerases .1. Purification and Properties of an Alpha-Amanitin-Sensitive Ribonucleic-Acid Polymerase and Stimulatory Factors from Hela and Kb Cells. Journal of Biological Chemistry, 248 (11). pp. 3777-3788.

Sun, SD, Tollkuhn, J (January 2023) Regulation of gene expression in the brain by sex hormones. In: Principles of Gender-Specific Medicine: Sex and Gender-Specific Biology in the Postgenomic Era. UNSPECIFIED, pp. 117-127. ISBN 9780323885348

Sun, Shenghuan, Torok, Justin, Mezias, Christopher, Ma, Daren, Raj, Ashish (October 2023) Spatial cell-type enrichment predicts mouse brain connectivity. Cell Reports, 42 (10). p. 113258. ISSN 2211-1247

Sun, G., Krasnitz, A. (2019) CORE: A Software Tool for Delineating Regions of Recurrent DNA Copy Number Alteration in Cancer. Methods Mol Biol, 1878. pp. 85-93. ISSN 1064-3745

Sun, Lijuan, Han, Xiao, Egeblad, Mikala (December 2022) Isolation of mouse mammary carcinoma-derived macrophages and cancer cells for co-culture assays. STAR Protocols, 3 (4). p. 101833. ISSN 2666-1667 (In Press)

Sun, Lijuan, Kees, Tim, Almeida, Ana Santos, Liu, Bodu, He, Xue-Yan, Ng, David, Han, Xiao, Spector, David L, McNeish, Iain A, Gimotty, Phyllis, Adams, Sylvia, Egeblad, Mikala (September 2021) Activating a collaborative innate-adaptive immune response to control metastasis. Cancer Cell. ISSN 1535-6108

Sun, Yu-Chi, Chen, Xiaoyin, Fischer, Stephan, Lu, Shaina, Zhan, Huiqing, Gillis, Jesse, Zador, Anthony M (May 2021) Integrating barcoded neuroanatomy with spatial transcriptional profiling enables identification of gene correlates of projections. Nature Neuroscience. ISSN 1097-6256

Surbhi, . , Borniger, J. C., Russart, K. L. G., Zhang, N., Magalang, U. J., Nelson, R. J. (February 2019) miR-155 deletion modulates lipopolysaccharide-induced sleep in female mice. Chronobiol Int, 36 (2). pp. 188-202. ISSN 1525-6073 (Electronic)0742-0528 (Linking)

Suresh, Hamsini, Crow, Megan, Jorstad, Nikolas, Hodge, Rebecca, Lein, Ed, Dobin, Alexander, Bakken, Trygve, Gillis, Jesse (September 2023) Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution. Nature Ecology and Evolution. ISSN 2397-334X

Suresh, Hamsini, Crow, Megan, Jorstad, Nikolas, Hodge, Rebecca, Lein, Ed, Dobin, Alexander, Bakken, Trygve, Gillis, Jesse (2022) Conserved coexpression at single cell resolution across primate brains. (Submitted)

Swamynathan, Manojit M, Kuang, Shan, Watrud, Kaitlin E, Doherty, Mary R, Gineste, Charlotte, Mathew, Grinu, Gong, Grace Q, Cox, Hilary, Cheng, Eileen, Reiss, David, Kendall, Jude, Ghosh, Diya, Reczek, Colleen R, Zhao, Xiang, Herzka, Tali, Špokaitė, Saulė, Dessus, Antoine N, Kim, Seung Tea, Klingbeil, Olaf, Liu, Juan, Nowak, Dawid G, Alsudani, Habeeb, Wee, Tse-Luen, Park, Youngkyu, Minicozzi, Francesca, Rivera, Keith, Almeida, Ana S, Chang, Kenneth, Chakrabarty, Ram P, Wilkinson, John E, Gimotty, Phyllis A, Diermeier, Sarah D, Egeblad, Mikala, Vakoc, Christopher R, Locasale, Jason W, Chandel, Navdeep S, Janowitz, Tobias, Hicks, James B, Wigler, Michael, Pappin, Darryl J, Williams, Roger L, Cifani, Paolo, Tuveson, David A, Laporte, Jocelyn, Trotman, Lloyd C (October 2024) Dietary pro-oxidant therapy by a vitamin K precursor targets PI 3-kinase VPS34 function. Science, 386 (6720). eadk9167. ISSN 0036-8075

Syrjänen, Johanna L, Epstein, Max, Gómez, Ricardo, Furukawa, Hiro (June 2023) Structure of human CALHM1 reveals key locations for channel regulation and blockade by ruthenium red. Nature Communications, 14 (1). p. 3821. ISSN 2041-1723 (Public Dataset)

Szadai, Zoltán, Pi, Hyun-Jae, Chevy, Quentin, Ócsai, Katalin, Albeanu, Dinu F, Chiovini, Balázs, Szalay, Gergely, Katona, Gergely, Kepecs, Adam, Rózsa, Balázs (November 2022) Cortex-wide response mode of VIP-expressing inhibitory neurons by reward and punishment. eLife, 11. e78815. ISSN 2050-084X

Szelenyi, Eric R, Fisenne, Danielle, Knox, Joseph E, Harris, Julie A, Gornet, James A, Palaniswamy, Ramesh, Kim, Yongsoo, Venkataraju, Kannan Umadevi, Osten, Pavel (April 2024) Distributed X chromosome inactivation in brain circuitry is associated with X-linked disease penetrance of behavior. Cell Reports, 43 (4). p. 114068. ISSN 2211-1247

T

Tai, Y., Gallo, N. B., Wang, M., Yu, J. R., Van Aelst, L. (February 2019) Axo-axonic Innervation of Neocortical Pyramidal Neurons by GABAergic Chandelier Cells Requires AnkyrinG-Associated L1CAM. Neuron, 102 (2). pp. 267-270. ISSN 0896-6273

Tajima, Nami, Simorowski, Noriko, Yovanno, Remy A, Regan, Michael C, Michalski, Kevin, Gómez, Ricardo, Lau, Albert Y, Furukawa, Hiro (February 2022) Development and characterization of functional antibodies targeting NMDA receptors. Nature Communications, 13 (1). p. 923. ISSN 2041-1723

Tam, O. H., Aravin, A. A., Stein, P., Girard, A., Murchison, E. P., Cheloufi, S., Hodges, E., Anger, M., Sachidanandam, R., Schultz, R. M., Hannon, G. J. (2008) Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes. Nature, 453 (7194). pp. 534-538. ISSN 00280836 (ISSN)

Tang, Ziqi, Toneyan, Shushan, Koo, Peter K (December 2023) Current approaches to genomic deep learning struggle to fully capture human genetic variation. Nature Genetics, 55 (12). pp. 2021-2022. ISSN 1061-4036

Taranda, Julian, Mathew, Grinu, Watrud, Kaitlin, El-Amine, Nour, Lee, Matthew F, Elowsky, Corey, Bludova, Anastasiia, Escobar Avelar, Sintia, Nowak, Dawid G, Wee, Tse-Luen, Wilkinson, John E, Trotman, Lloyd C, Osten, Pavel (November 2021) Combined whole-organ imaging at single-cell resolution and immunohistochemical analysis of prostate cancer and its liver and brain metastases. Cell Reports, 37 (7). p. 110027. ISSN 2211-1247

Thacker, Gatha, Henry, Samantha, Nandi, Ajeya, Debnath, Rahul, Singh, Snahlata, Nayak, Anupma, Susnik, Barbara, Boone, Melinda M, Zhang, Qing, Kesmodel, Susan B, Gumber, Sanjeev, Das, Gokul M, Kambayashi, Taku, Dos Santos, Camila O, Chakrabarti, Rumela (March 2023) Immature natural killer cells promote progression of triple-negative breast cancer. Science Translational Medicine, 15 (686). eabl4414. ISSN 1946-6234

Throesch, Benjamin T, Bin Imtiaz, Muhammad Khadeesh, Muñoz-Castañeda, Rodrigo, Sakurai, Masahiro, Hartzell, Andrea L, James, Kiely N, Rodriguez, Alberto R, Martin, Greg, Lippi, Giordano, Kupriyanov, Sergey, Wu, Zhuhao, Osten, Pavel, Izpisua Belmonte, Juan Carlos, Wu, Jun, Baldwin, Kristin K (April 2024) Functional sensory circuits built from neurons of two species. Cell, 187 (9). 2143-2157.e15. ISSN 0092-8674

Tian, C., Clauser, K. R., Ohlund, D., Rickelt, S., Huang, Y., Gupta, M., Mani, D. R., Carr, S. A., Tuveson, D. A., Hynes, R. O. (September 2019) Proteomic analyses of ECM during pancreatic ductal adenocarcinoma progression reveal different contributions by tumor and stromal cells. Proc Natl Acad Sci U S A, 116 (39). pp. 19609-19618. ISSN 0027-8424

Tian, C., Ohlund, D., Rickelt, S., Lidstrom, T., Huang, Y., Hao, L., Zhao, R. T., Franklin, O., Bhatia, S. N., Tuveson, D. A., Hynes, R. O. (February 2020) Cancer-cell-derived matrisome proteins promote metastasis in pancreatic ductal adenocarcinoma. Cancer Res, 80 (7). pp. 1461-1474. ISSN 0008-5472

Tollkuhn, Jessica (May 2024) Parental-care puzzle in mice solved by thinking outside the brain. Nature. ISSN 0028-0836

Tracey, KJ (July 2021) From human to mouse and back offers hope for patients with fibromyalgia. Journal of Clinical Investigation, 131 (13). ISSN 0021-9738

Trivedi, Gaurang, Inoue, Daichi, Chen, Cynthia, Bitner, Lillian, Chung, Young Rock, Taylor, Justin, Gönen, Mithat, Wess, Jürgen, Abdel-Wahab, Omar, Zhang, Lingbo (2019) Muscarinic acetylcholine receptor regulates self-renewal of early erythroid progenitors. Science Translational Medicine, 11 (511).

Truong, Thu H, Benner, Elizabeth A, Hagen, Kyla M, Temiz, Nuri A, Kerkvliet, Carlos Perez, Wang, Ying, Cortes-Sanchez, Emilio, Yang, Chieh-Hsiang, Trousdell, Marygrace C, Pengo, Thomas, Guillen, Katrin P, Welm, Bryan E, Dos Santos, Camila O, Telang, Sucheta, Lange, Carol A, Ostrander, Julie H (June 2021) PELP1/SRC-3-dependent regulation of metabolic PFKFB kinases drives therapy resistant ER+ breast cancer. Oncogene. ISSN 0950-9232

Tyekucheva, S., Yolken, R. H., McCombie, W. R., Parla, J., Kramer, M., Wheelan, S. J., Sabunciyan, S. (October 2011) Establishing the baseline level of repetitive element expression in the human cortex. BMC Genomics, 12. article number 495. ISSN 1471-2164

U

Umakantha, Akash, Morina, Rudina, Cowley, Benjamin R, Snyder, Adam C, Smith, Matthew A, Yu, Byron M (September 2021) Bridging neuronal correlations and dimensionality reduction. Neuron, 109 (17). 2740-2754.e12. ISSN 0896-6273

Urai, Anne E, Aguillon-Rodriguez, Valeria, Laranjeira, Inês C, Cazettes, Fanny, International Brain Laboratory, Mainen, Zachary F, Churchland, Anne K (January 2021) Citric Acid Water as an Alternative to Water Restriction for High-Yield Mouse Behavior. eNeuro, 8 (1). pp. 1-8. ISSN 2373-2822

V

Vasudevan, A., Baruah, P.S., Smith, J.C., Wang, Z., Sayles, N. M., Andrews, P., Kendall, J., Leu, J., Chunduri, N.K., Levy, D., Wigler, M., Storchova, Z., Sheltzer, J. M. (February 2020) Single-Chromosomal Gains Can Function as Metastasis Suppressors and Promoters in Colon Cancer. Developmental Cell, 52 (4). pp. 413-428. ISSN 1534-5807

Vasudevan, Anand, Schukken, Klaske M, Sausville, Erin L, Girish, Vishruth, Adebambo, Oluwadamilare A, Sheltzer, Jason M (February 2021) Aneuploidy as a promoter and suppressor of malignant growth. Nature Reviews Cancer, 21 (2). pp. 89-103. ISSN 1474-175X

Venkatasubramani, J.P., Subramanyam, P., Pal, R., Reddy, B.K., Srinivasan, D.J., Chattarji, S., Iossifov, I., Klann, E., Bhattacharya, S. (March 2020) N-terminal Variant Asp14Asn of the Human p70 S6 Kinase 1 Enhances Translational Signaling Causing Different Effects in Developing and Mature Neuronal Cells. Neurobiology of Learning and Memory, 171 (107203). ISSN 1074-7427

Vernersson-Lindahl, E., Mills, A. A. (March 2010) ΔNp73β puts the brakes on DNA repair. Genes Dev, 24 (6). pp. 517-20. ISSN 1549-5477 (Electronic) 0890-9369 (Linking)

Vogel, A., Pollack, R. (October 1973) Isolation and characterization of revertant cell lines. IV. Direct selection of serum-revertant sublines of SV40-transformed 3T3 mouse cells. J Cell Physiol, 82 (2). pp. 189-98.

Vornhagen, Jay, Bassis, Christine M, Ramakrishnan, Srividya, Hein, Robert, Mason, Sophia, Bergman, Yehudit, Sunshine, Nicole, Fan, Yunfan, Holmes, Caitlyn L, Timp, Winston, Schatz, Michael C, Young, Vincent B, Simner, Patricia J, Bachman, Michael A (April 2021) A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor. PLoS Pathogens, 17 (4). e1009537. ISSN 1553-7366

van Kempen, J., Gieselmann, M. A., Boyd, M., Steinmetz, N. A., Moore, T., Engel, T. A., Thiele, A. (December 2020) Top-down coordination of local cortical state during selective attention. Neuron. ISSN 0896-6273

W

Walker, W. H., Borniger, J. C., Gaudier-Diaz, M. M., Hecmarie Melendez-Fernandez, O., Pascoe, J. L., Courtney DeVries, A., Nelson, R. J. (May 2019) Acute exposure to low-level light at night is sufficient to induce neurological changes and depressive-like behavior. Mol Psychiatry. ISSN 1476-5578

Wan, Ledong, Lin, Kuan-Ting, Rahman, Mohammad Alinoor, Ishigami, Yuma, Wang, Zhikai, Jensen, Mads A, Wilkinson, John E, Park, Youngkyu, Tuveson, David A, Krainer, Adrian R (July 2023) Splicing Factor SRSF1 Promotes Pancreatitis and KRASG12D-Mediated Pancreatic Cancer. Cancer Discovery, 13 (7). pp. 1678-1695. ISSN 2159-8274 (Public Dataset)

Wang, Gang, Li, Jianlong, Bojmar, Linda, Chen, Haiyan, Li, Zhong, Tobias, Gabriel C, Hu, Mengying, Homan, Edwin A, Lucotti, Serena, Zhao, Fengbo, Posada, Valentina, Oxley, Peter R, Cioffi, Michele, Kim, Han Sang, Wang, Huajuan, Lauritzen, Pernille, Boudreau, Nancy, Shi, Zhanjun, Burd, Christin E, Zippin, Jonathan H, Lo, James C, Pitt, Geoffrey S, Hernandez, Jonathan, Zambirinis, Constantinos P, Hollingsworth, Michael A, Grandgenett, Paul M, Jain, Maneesh, Batra, Surinder K, DiMaio, Dominick J, Grem, Jean L, Klute, Kelsey A, Trippett, Tanya M, Egeblad, Mikala, Paul, Doru, Bromberg, Jacqueline, Kelsen, David, Rajasekhar, Vinagolu K, Healey, John H, Matei, Irina R, Jarnagin, William R, Schwartz, Robert E, Zhang, Haiying, Lyden, David (June 2023) Tumour extracellular vesicles and particles induce liver metabolic dysfunction. Nature, 618 (7964). pp. 374-382. ISSN 0028-0836 (Public Dataset)

Wang, E., Lu, S. X., Pastore, A., Chen, X., Imig, J., Chun-Wei Lee, S., Hockemeyer, K., Ghebrechristos, Y. E., Yoshimi, A., Inoue, D., Ki, M., Cho, H., Bitner, L., Kloetgen, A., Lin, K. T., Uehara, T., Owa, T., Tibes, R., Krainer, A. R., Abdel-Wahab, O., Aifantis, I. (February 2019) Targeting an RNA-Binding Protein Network in Acute Myeloid Leukemia. Cancer Cell, 35 (3). 359-384.e7. ISSN 1535-6108

Wang, X., Tucciarone, J., Jiang, S., Yin, F., Wang, B. S., Wang, D., Jia, Y., Jia, X., Li, Y., Yang, T., Xu, Z., Akram, M. A., Wang, Y., Zeng, S., Ascoli, G. A., Mitra, P., Gong, H., Luo, Q., Huang, Z. J. (March 2019) Genetic Single Neuron Anatomy Reveals Fine Granularity of Cortical Axo-Axonic Cells. Cell Rep, 26 (11). 3145-3159.e5.

Wang, Y., Leonard, M. K., Snyder, D. E., Fisher, M. L., Eckert, R. L., Kaetzel, D. M. (August 2019) NME1 Drives Expansion of Melanoma Cells with Enhanced Tumor Growth and Metastatic Properties. Mol Cancer Res, 17 (8). pp. 1665-1674. ISSN 1541-7786

Wang, Bor-Shuen, Bernardez Sarria, Maria Sol, An, Xu, He, Miao, Alam, Nazia M, Prusky, Glen T, Crair, Michael C, Huang, Z Josh (February 2021) Retinal and Callosal Activity-Dependent Chandelier Cell Elimination Shapes Binocularity in Primary Visual Cortex. Neuron, 109 (3). 502-515.e7. ISSN 0896-6273

Wang, Minghui, Gallo, Nicholas B, Tai, Yilin, Li, Bo, Van Aelst, Linda (April 2021) Oligophrenin-1 moderates behavioral responses to stress by regulating parvalbumin interneuron activity in the medial prefrontal cortex. Neuron. ISSN 0896-6273

Wang, Zhikai, Moresco, Philip, Yan, Ran, Li, Jiayun, Gao, Ya, Biasci, Daniele, Yao, Min, Pearson, Jordan, Hechtman, Jaclyn F, Janowitz, Tobias, Zaidi, Raza M, Weiss, Matthew J, Fearon, Douglas T (January 2022) Carcinomas assemble a filamentous CXCL12-keratin-19 coating that suppresses T cell-mediated immune attack. Proceedings of the National Academy of Sciences of USA, 119 (4). e2119463119-e2119463119. ISSN 0027-8424

Wei, Yiliang, Huang, Yu-Han, Skopelitis, Damianos S, Iyer, Shruti V, Costa, Ana SH, Yang, Zhaolin, Kramer, Melissa, Adelman, Emmalee R, Klingbeil, Olaf, Demerdash, Osama E, Polyanskaya, Sofya A, Chang, Kenneth, Goodwin, Sara, Hodges, Emily, McCombie, W Richard, Figueroa, Maria E, Vakoc, Christopher R (September 2021) SLC5A3-dependent myo-inositol auxotrophy in acute myeloid leukemia. Cancer Discovery. candisc.1849.2020-candisc.1849.2020. ISSN 2159-8274

Welch, W. J., Mizzen, L. A., Arrigo, A. P., Riabowol, K. (April 1988) Structure and Function of the Mammalian Stress Proteins. Journal of Cellular Biochemistry, 38 (S12D). p. 248. ISSN 0733-1959 0730-6652

Wen, Qing, Zhou, Jiaqi, Tian, Congcong, Li, Xinran, Song, Guibing, Gao, Yuan, Sun, Yaping, Ma, Chiyuan, Yao, Sitong, Liang, Xiaoyan, Kang, Xing, Wang, Nan, Yao, Yuan, Wang, Hongbao, Liang, Xiaohuan, Tang, Jialin, Offer, Steven M, Lei, Xiaohua, Yu, Chuanhe, Liu, Xiangyu, Liu, Zichuan, Wang, Zhiquan, Gan, Haiyun (September 2023) Symmetric inheritance of parental histones contributes to safeguarding the fate of mouse embryonic stem cells during differentiation. Nature Genetics, 55 (9). pp. 1555-1566. ISSN 1061-4036

Werner, Jonathan M, Hover, John, Gillis, Jesse (October 2024) Population variability in X-chromosome inactivation across 10 mammalian species. Nature Communications, 15 (1). p. 8991. ISSN 2041-1723 (Public Dataset)

Werner, Jonathan M, Hover, John, Gillis, Jesse (October 2023) Population variability in X-chromosome inactivation across 9 mammalian species. (Submitted)

Werner, Jonathan M, Ballouz, Sara, Hover, John, Gillis, Jesse (July 2022) Variability of cross-tissue X-chromosome inactivation characterizes timing of human embryonic lineage specification events. Developmental Cell, 57 (16). S1534-5807(22)00496. ISSN 1534-5807