Items where Subject is "Oryza"

Paper

Ammiraju, J. S. S., Song, X., Luo, M., Sisneros, N., Angelova, A., Kudrna, D., Kim, H., Yu, Y., Goicoechea, J. L., Lorieux, M., Kurata, N., Brar, D., Ware, D. H., Jackson, S., Wing, R. A. (2010) The Oryza BAC resource: A genus-wide and genome scale tool for exploring rice genome evolution and leveraging useful genetic diversity from wild relatives. Breeding Science, 60 (5). pp. 536-543. ISSN 13447610 (ISSN)

Chen, J. P., Jiao, Y. P., Laza, H., Payton, P., Ware, D., Xin, Z. G. (November 2019) Identification of the First Nuclear Male Sterility Gene (Male-sterile 9) in Sorghum. Plant Genome, 12 (3). Article No 190020. ISSN 1940-3372

Chen, Wenkang, Chen, Lu, Zhang, Xuan, Yang, Ning, Guo, Jianghua, Wang, Min, Ji, Shenghui, Zhao, Xiangyu, Yin, Pengfei, Cai, Lichun, Xu, Jing, Zhang, Lili, Han, Yingjia, Xiao, Yingni, Xu, Gen, Wang, Yuebin, Wang, Shuhui, Wu, Sheng, Yang, Fang, Jackson, David, Cheng, Jinkui, Chen, Saihua, Sun, Chuanqing, Qin, Feng, Tian, Feng, Fernie, Alisdair R, Li, Jiansheng, Yan, Jianbing, Yang, Xiaohong (March 2022) Convergent selection of a WD40 protein that enhances grain yield in maize and rice. Science, 375 (6587). eabg7985. ISSN 0036-8075

Cranston, K. A., Hurwitz, B. L., Sanderson, M. J., Ware, D. H., Wing, R. A., Stein, L. D. (2010) Phylogenomic analysis of BAC-end sequence libraries in Oryza (Poaceae). Systematic Botany, 35 (3). pp. 512-523.

Gill, N., SanMiguel, P., Dhillon, B. D. S., Abernathy, B., Kim, H., Stein, L. D., Ware, D. H., Wing, R., Jackson, S. A. (December 2010) Dynamic Oryza Genomes: Repetitive DNA Sequences as Genome Modeling Agents. Rice, 3 (4). pp. 251-269.

Gladman, Nicholas, Kumari, Sunita, Fahey, Audrey, Regulski, Michael, Ware, Doreen (September 2024) GRAS Family Transcription Factor Binding Behaviors in Sorghum bicolor, Oyrza, and Maize. bioRxiv. ISSN 2692-8205 (Public Dataset) (Submitted)

Hass-Jacobus, B. L., Futrell-Griggs, M., Abernathy, B., Westerman, R., Goicoechea, J. L., Stein, J., Klein, P., Hurwitz, B., Zhou, B., Rakhshan, F., Sanyal, A., Gill, N., Lin, J. Y., Walling, J. G., Luo, M. Z., Ammiraju, J. S. S., Kudrna, D., Kim, H. R., Ware, D., Wing, Rod A., San Miguel, P., Jackson, S. A. (2006) Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum. BMC Genomics, 7. p. 199. ISSN 14712164

Hurwitz, B. L., Kudrna, D., Yu, Y., Sebastian, A., Zuccolo, A., Jackson, S. A., Ware, D. H., Wing, R. A., Stein, L. D. (2010) Rice structural variation: A comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza. Plant Journal, 63 (6). pp. 990-1003.

Joly-Lopez, Z., Platts, A. E., Gulko, B., Choi, J. Y., Groen, S. C., Zhong, X., Siepel, A., Purugganan, M. D. (February 2020) An inferred fitness consequence map of the rice genome. Nat Plants, 6 (2). pp. 119-130. ISSN 2055-0278 (Public Dataset)

Kim, H. R., Hurwitz, B. L., Yu, Y., Collura, K., Gill, N., SanMiguel, P., Mullikin, J. C., Maher, C., Nelson, W., Wissotski, M., Braidotti, M., Kudrna, D., Goigochia, J. L., Stein, L. D., Ware, D. H., Jackson, S., Soderlund, C., Wing, R. (February 2008) Construction, alignment and analysis of 12 framework physical maps that represent the 10 genome types of the genus Oryza. Genome Biology, 9 (2). R45. ISSN 1465-6906

Lanctot, Amy (February 2022) Branching out underground: brassinosteroid signaling promotes lateral root development in rice. Plant Physiology. ISSN 1532-2548

Ntakirutimana, Fabrice, Tranchant-Dubreuil, Christine, Cubry, Philippe, Chougule, Kapeel, Zhang, Jianwei, Wing, Rod A, Adam, Hélène, Lorieux, Mathias, Jouannic, Stefan (August 2023) Genome-wide association analysis identifies natural allelic variants associated with panicle architecture variation in African rice, Oryza glaberrima Steud. G3: Genes, Genomes, Genetics. jkad174. ISSN 2160-1836 (Public Dataset)

Ranallo-Benavidez, Rhyker, Lemmon, Zachary, Soyk, Sebastian, Aganezov, Sergey, Salerno, William, McCoy, Rajiv, Lippman, Zachary, Schatz, Michael, Sedlazeck, Fritz (August 2020) SVCollector: Optimized sample selection for cost-efficient long-read population sequencing. BioRxiv. (Unpublished)

Satterlee, James W, Alonso, David, Gramazio, Pietro, Jenike, Katharine M, He, Jia, Arrones, Andrea, Villanueva, Gloria, Plazas, Mariola, Ramakrishnan, Srividya, Benoit, Matthias, Gentile, Iacopo, Hendelman, Anat, Shohat, Hagai, Fitzgerald, Blaine, Robitaille, Gina M, Green, Yumi, Swartwood, Kerry, Passalacqua, Michael J, Gagnon, Edeline, Hilgenhof, Rebecca, Huggins, Trevis D, Eizenga, Georgia C, Gur, Amit, Rutten, Twan, Stein, Nils, Yao, Shengrui, Poncet, Adrien, Bellot, Clement, Frary, Amy, Knapp, Sandra, Bendahmane, Mohammed, Särkinen, Tiina, Gillis, Jesse, Van Eck, Joyce, Schatz, Michael C, Eshed, Yuval, Prohens, Jaime, Vilanova, Santiago, Lippman, Zachary B (August 2024) Convergent evolution of plant prickles by repeated gene co-option over deep time. Science, 385 (6708). eado1663. ISSN 0036-8075 (Public Dataset)

Song, G., Kwon, C. T., Kim, S. H., Shim, Y., Lim, C., Koh, H. J., An, G., Kang, K., Paek, N. C. (January 2019) The Rice SPOTTED LEAF4 (SPL4) Encodes a Plant Spastin That Inhibits ROS Accumulation in Leaf Development and Functions in Leaf Senescence. Frontiers in Plant Science, 9. ISSN 1664-462X

Tello-Ruiz, M. K., Naithani, S., Gupta, P., Olson, A., Wei, S., Preece, J., Jiao, Y., Wang, B., Chougule, K., Garg, P., Elser, J., Kumari, S., Kumar, V., Contreras-Moreira, B., Naamati, G., George, N., Cook, J., Bolser, D., D'Eustachio, P., Stein, L. D., Gupta, A., Xu, W., Regala, J., Papatheodorou, I., Kersey, P. J., Flicek, P., Taylor, C., Jaiswal, P., Ware, D. (January 2021) Gramene 2021: harnessing the power of comparative genomics and pathways for plant research. Nucleic Acids Res, 49 (D1). D1452-d1463. ISSN 0305-1048 (Print)0305-1048

Vaughn, Justin N, Korani, Walid, Stein, Joshua C, Edwards, Jeremy D, Peterson, Daniel G, Simpson, Sheron A, Youngblood, Ramey C, Grimwood, Jane, Chougule, Kapeel, Ware, Doreen H, McClung, Anna M, Scheffler, Brian E (March 2021) Gene disruption by structural mutations drives selection in US rice breeding over the last century. PLoS Genetics, 17 (3). e1009389. ISSN 1553-7404

Wing, R. A., Ammiraju, J. S. S., Luo, M. Z. X., Kim, H., Yu, Y. S., Kudrna, D., Goicoechea, J. L., Wang, W. M., Nelson, W., Rao, K., Brar, D., Mackill, D. J., Han, B., Soderlund, C., Stein, L., SanMiguel, P., Jackson, S. (September 2005) The Oryza Map Alignment Project: The golden path to unlocking the genetic potential of wild rice species. Plant Molecular Biology, 59 (1). pp. 53-62. ISSN 0167-4412

Zebell, S (September 2021) A TALENt for reviving old questions about cytoplasmic male sterility. Plant Physiology, 187 (1). pp. 14-16. ISSN 0032-0889

Zebell, Sophia (March 2021) Gene body silencing parental alleles for vigorous hybrid rice. Plant Physiology, 186 (2). pp. 822-823. ISSN 0032-0889

Zhou, Yong, Yu, Zhichao, Chebotarov, Dmytro, Chougule, Kapeel, Lu, Zhenyuan, Rivera, Luis F, Kathiresan, Nagarajan, Al-Bader, Noor, Mohammed, Nahed, Alsantely, Aseel, Mussurova, Saule, Santos, João, Thimma, Manjula, Troukhan, Maxim, Fornasiero, Alice, Green, Carl D, Copetti, Dario, Kudrna, David, Llaca, Victor, Lorieux, Mathias, Zuccolo, Andrea, Ware, Doreen, McNally, Kenneth, Zhang, Jianwei, Wing, Rod A (March 2023) Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice. Nature Communications, 14 (1). p. 1567. ISSN 2041-1723

Zhu, Chuanmei, Liu, Lei, Crowell, Olivia, Zhao, Hui, Brutnell, Thomas P, Jackson, David, Kellogg, Elizabeth A (2021) The CLV3 Homolog in Setaria viridis Selectively Controls Inflorescence Meristem Size. Frontiers in Plant Science, 12. p. 636749. ISSN 1664-462X