Items where Community is "Martienssen lab"

Paper

Kim, Hyun-Soo, Roche, Benjamin, Bhattacharjee, Sonali, Todeschini, Leila, Chang, An-Yun, Hammell, Christopher, Verdel, André, Martienssen, Robert A (October 2024) Clr4SUV39H1 ubiquitination and non-coding RNA mediate transcriptional silencing of heterochromatin via Swi6 phase separation. Nature Communications, 15 (1). p. 9384. ISSN 2041-1723 (Public Dataset)

Herridge, Rowan P, Dolata, Jakub, Migliori, Valentina, de Santis Alves, Cristiane, Borges, Filipe, Schorn, Andrea J, van Ex, Frédéric, Lin, Ann, Bajczyk, Mateusz, Parent, Jean-Sebastien, Leonardi, Tommaso, Hendrick, Alan, Kouzarides, Tony, Martienssen, Robert A (September 2024) Pseudouridine guides germline small RNA transport and epigenetic inheritance. Nature Structural & Molecular Biology. ISSN 1545-9993 (Public Dataset)

Shimada, Atsushi, Cahn, Jonathan, Ernst, Evan, Lynn, Jason, Grimanelli, Daniel, Henderson, Ian, Kakutani, Tetsuji, Martienssen, Robert A (September 2024) Retrotransposon addiction promotes centromere function via epigenetically activated small RNAs. Nature Plants. ISSN 2055-0278 (Public Dataset)

de Oliveira, Beatriz Cristina Dias, Shiburah, Mark Ewusi, Assis, Luiz Henrique Castro, Fontes, Veronica Silva, Bisetegn, Habtye, de Oliveira Passos, Arthur, de Oliveira, Leilane S, de Santis Alves, Cristiane, Ernst, Evan, Martienssen, Rob, Gallo-Francisco, Pedro Henrique, Giorgio, Selma, Batista, Marcos Meuser, de Nazaré Correia Soeiro, Maria, Menna-Barreto, Rubem Figueiredo Sadok, Aoki, Juliana Ide, Coelho, Adriano Cappellazzo, Cano, Maria Isabel Nogueira (August 2024) Leishmania major telomerase RNA knockout: From altered cell proliferation to decreased parasite infectivity. International Journal of Biological Macromolecules. p. 135150. ISSN 0141-8130

Berube, Benjamin, Ernst, Evan, Cahn, Jonathan, Roche, Benjamin, de Santis Alves, Cristiane, Lynn, Jason, Scheben, Armin, Grimanelli, Daniel, Siepel, Adam, Ross-Ibarra, Jeffrey, Kermicle, Jerry, Martienssen, Robert A (August 2024) Teosinte Pollen Drive guides maize diversification and domestication by RNAi. Nature. ISSN 0028-0836 (Public Dataset)

Shi, Hai, Ernst, Evan, Heinzel, Nicolas, McCorkle, Sean, Rolletschek, Hardy, Borisjuk, Ljudmilla, Ortleb, Stefan, Martienssen, Robert, Shanklin, John, Schwender, Jorg (October 2023) Mechanisms of metabolic adaptation in the duckweed Lemna gibba: an integrated metabolic, transcriptomic and flux analysis. BMC Plant Biology, 23 (1). p. 458. ISSN 1471-2229 (Public Dataset)

Girish, Vishruth, Lakhani, Asad A, Thompson, Sarah L, Scaduto, Christine M, Brown, Leanne M, Hagenson, Ryan A, Sausville, Erin L, Mendelson, Brianna E, Kandikuppa, Pranav K, Lukow, Devon A, Yuan, Monet Lou, Stevens, Eric C, Lee, Sophia N, Schukken, Klaske M, Akalu, Saron M, Vasudevan, Anand, Zou, Charles, Salovska, Barbora, Li, Wenxue, Smith, Joan C, Taylor, Alison M, Martienssen, Robert A, Liu, Yansheng, Sun, Ruping, Sheltzer, Jason M (August 2023) Oncogene-like addiction to aneuploidy in human cancers. Science, 381 (6660). eadg4521. ISSN 0036-8075 (Public Dataset)

Lee, Seung Cho, Adams, Dexter W, Ipsaro, Jonathan J, Cahn, Jonathan, Lynn, Jason, Kim, Hyun-Soo, Berube, Benjamin, Major, Viktoria, Calarco, Joseph P, LeBlanc, Chantal, Bhattacharjee, Sonali, Ramu, Umamaheswari, Grimanelli, Daniel, Jacob, Yannick, Voigt, Philipp, Joshua-Tor, Leemor, Martienssen, Robert A (August 2023) Chromatin remodeling of histone H3 variants by DDM1 underlies epigenetic inheritance of DNA methylation. Cell, 186 (19). 4100-4116.e15. ISSN 0092-8674 (Public Dataset)

Stevenson, Dennis Wm, Ramakrishnan, Srividya, Alves, Cristiane de Santis, Coelho, Laís Araujo, Kramer, Melissa, Goodwin, Sara, Ramos, Olivia Mendevil, Eshel, Gil, Sondervan, Veronica M, Frangos, Samantha, Zumajo-Cardona, Cecilia, Jenike, Katherine, Ou, Shujun, Wang, Xiaojin, Lee, Yin Peng, Loke, Stella, Rossetto, Maurizio, McPherson, Hannah, Nigris, Sebastiano, Moschin, Silvia, Little, Damon P, Katari, Manpreet S, Varala, Kranthi, Kolokotronis, Sergios-Orestis, Ambrose, Barbara, Croft, Larry J, Coruzzi, Gloria M, Schatz, Michael, McCombie, W Richard, Martienssen, Robert A (August 2023) The genome of the Wollemi pine, a critically endangered "living fossil" unchanged since the Cretaceous, reveals extensive ancient transposon activity. bioRxiv. (Public Dataset) (Submitted)

Herridge, Rowan P, Dolata, Jakub, Migliori, Valentina, de Santis Alves, Cristiane, Borges, Filipe, Van Ex, Frédéric, Lin, Ann, Bajczyk, Mateusz, Leonardi, Tommaso, Hendrick, Alan, Schorn, Andrea J, Kouzarides, Tony, Martienssen, Robert A (August 2023) Pseudouridine guides germline small RNA transport and epigenetic inheritance. bioRxiv. (Public Dataset)

Shimada, Atsushi, Cahn, Jonathan, Ernst, Evan, Lynn, Jason, Grimanelli, Daniel, Henderson, Ian, Kakutani, Tetsuji, Martienssen, Robert A (August 2023) Retrotransposon addiction promotes centromere function via epigenetically activated small RNAs. (Public Dataset) (Submitted)

Berube, Benjamin, Ernst, Evan, Cahn, Jonathan, Roche, Benjamin, de Santis Alves, Cristiane, Lynn, Jason, Scheben, Armin, Siepel, Adam, Ross-Ibarra, Jeffrey, Kermicle, Jerry, Martienssen, Robert A (August 2023) Teosinte Pollen Drive guides maize domestication and evolution by RNAi. bioRxiv. (Public Dataset) (Submitted)

Lee, Seung Cho, Adams, Dexter W, Ipsaro, Jonathan J, Cahn, Jonathan, Lynn, Jason, Kim, Hyun-Soo, Berube, Benjamin, Major, Viktoria, Calarco, Joseph P, LeBlanc, Chantal, Bhattacharjee, Sonali, Ramu, Umamaheswari, Grimanelli, Daniel, Jacob, Yannick, Voigt, Philipp, Joshua-Tor, Leemor, Martienssen, Robert A (August 2023) Chromatin remodeling of histone H3 variants underlies epigenetic inheritance of DNA methylation. bioRxiv. (Submitted)

Mateo-Elizalde, Cristian, Lynn, Jason, Ernst, Evan, Martienssen, Rob (February 2023) Duckweeds. Current Biology, 33 (3). R89-R91. ISSN 0960-9822

Girish, Vishruth, Lakhani, Asad A, Scaduto, Christine M, Thompson, Sarah L, Brown, Leanne M, Hagenson, Ryan A, Sausville, Erin L, Mendelson, Brianna E, Lukow, Devon A, Yuan, Monet Lou, Kandikuppa, Pranav K, Stevens, Eric C, Lee, Sophia N, Salovska, Barbora, Li, Wenxue, Smith, Joan C, Taylor, Alison M, Martienssen, Robert A, Liu, Yansheng, Sun, Ruping, Sheltzer, Jason M (January 2023) Oncogene-like addiction to aneuploidy in human cancers. bioRxiv. (Public Dataset) (Submitted)

Liang, Yuanxue, Yu, Xiao‐Hong, Anaokar, Sanket, Shi, Hai, Dahl, William B, Cai, Yingqi, Luo, Guangbin, Chai, Jin, Cai, Yuanheng, Mollá‐Morales, Almudena, Altpeter, Fredy, Ernst, Evan, Schwender, Jorg, Martienssen, Robert A, Shanklin, John (October 2022) Engineering Triacylglycerol Accumulation in Duckweed (Lemna japonica). Plant Biotechnology Journal. ISSN 1467-7644

Aubert, Juliette, Bellegarde, Fanny, Oltehua-Lopez, Omar, Leblanc, Olivier, Arteaga-Vazquez, Mario A, Martienssen, Robert A, Grimanelli, Daniel (August 2022) AGO104 is a RdDM effector of paramutation at the maize b1 locus. PLoS One, 17 (8). e0273695-e0273695. ISSN 1932-6203 (Public Dataset)

Gutbrod, MJ, Roche, B, Steinberg, JI, Lakhani, AA, Chang, K, Schorn, AJ, Martienssen, RA (February 2022) Dicer promotes genome stability via the bromodomain transcriptional co-activator BRD4. Nature Communications, 13 (1). p. 1001. ISSN 2041-1723

Naish, Matthew, Alonge, Michael, Wlodzimierz, Piotr, Tock, Andrew J, Abramson, Bradley W, Schmücker, Anna, Mandáková, Terezie, Jamge, Bhagyshree, Lambing, Christophe, Kuo, Pallas, Yelina, Natasha, Hartwick, Nolan, Colt, Kelly, Smith, Lisa M, Ton, Jurriaan, Kakutani, Tetsuji, Martienssen, Robert A, Schneeberger, Korbinian, Lysak, Martin A, Berger, Frédéric, Bousios, Alexandros, Michael, Todd P, Schatz, Michael C, Henderson, Ian R (November 2021) The genetic and epigenetic landscape of the Arabidopsis centromeres. Science, 374 (6569). eabi7489. ISSN 0036-8075

Lee, Seung Cho, Martienssen, Robert A (September 2021) Regulation of retrotransposition in Arabidopsis. Biochemical Society Transactions. ISSN 0300-5127

Alves, Cristiane S, Nogueira, Fabio TS (June 2021) Plant Small RNA World Growing Bigger: tRNA-Derived Fragments, Longstanding Players in Regulatory Processes. Frontiers in Molecular Biosciences, 8. ISSN 2296-889X

Parent, Jean-Sébastien, Cahn, Jonathan, Herridge, Rowan P, Grimanelli, Daniel, Martienssen, Robert A (June 2021) Small RNAs guide histone methylation in Arabidopsis embryos. Genes and Development. ISSN 0890-9369

Molik, David C, Tomlinson, DeAndre, Davitt, Shane, Morgan, Eric L, Sisk, Matthew, Roche, Benjamin, Meyers, Natalie, Pfrender, Michael E (April 2021) Combining natural language processing and metabarcoding to reveal pathogen-environment associations. PLoS Neglected Tropical Diseases, 15 (4). e0008755. ISSN 1935-2735

Mo, Ziyi, Scheben, Armin, Steinberg, Joshua, Siepel, Adam, Martienssen, Robert (March 2021) Circadian immunity, sunrise time and the seasonality of respiratory infections. medRxiv. (Unpublished)

Khouider, Souraya, Borges, Filipe, LeBlanc, Chantal, Ungru, Alexander, Schnittger, Arp, Martienssen, Robert, Colot, Vincent, Bouyer, Daniel (January 2021) Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function. Nature Communications, 12 (1). p. 410. ISSN 2041-1723

Lee, Seung Cho, Martienssen, Robert A (January 2021) Phase separation in plant miRNA processing. Nature Cell Biology, 23 (1). pp. 5-6. ISSN 1465-7392

Michael, Todd P, Ernst, Evan, Hartwick, Nolan, Chu, Philomena, Bryant, Douglas, Gilbert, Sarah, Ortleb, Stefan, Baggs, Erin L, Sree, K Sowjanya, Appenroth, Klaus J, Fuchs, Joerg, Jupe, Florian, Sandoval, Justin P, Krasileva, Ksenia V, Borisjuk, Ljudmylla, Mockler, Todd C, Ecker, Joseph R, Martienssen, Robert A, Lam, Eric (December 2020) Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control. Genome Research, 31 (2). pp. 225-238. ISSN 1088-9051

Borges, F., Donoghue, M. T. A., LeBlanc, C., Wear, E. E., Tanurdžić, M., Berube, B., Brooks, A., Thompson, W. F., Hanley-Bowdoin, L., Martienssen, R. A. (November 2020) Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation. Curr Biol, 31 (3). pp. 591-600. ISSN 0960-9822

Wear, Emily E, Song, Jawon, Zynda, Gregory J, Mickelson-Young, Leigh, LeBlanc, Chantal, Lee, Tae-Jin, Deppong, David O, Allen, George C, Martienssen, Robert A, Vaughn, Matthew W, Hanley-Bowdoin, Linda, Thompson, William F (October 2020) Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots. PLoS Genetics, 16 (10). e1008623. ISSN 1553-7404

Parent, J. S., Borges, F., Shimada, A., Martienssen, R. A. (June 2020) Small RNA Function in Plants: From Chromatin to the Next Generation. Cold Spring Harbor Symposia on Quantitative Biology. ISSN 00917451

Borg, M, Jacob, Y., Susaki, D., LeBlanc, C., Buendia, D, Axelsson, E., Kawashima, T., Voigt, P., Boavida, L. C., Becker, J. D., Higashiyama, T., Martienssen, R. A., Berger, F. (June 2020) Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin. Nature Cell Biology, 22 (6). p. 621. ISSN 1465-7392

Gutbrod, M. J., Martienssen, R. A. (May 2020) Conserved chromosomal functions of RNA interference. Nat Rev Genet, 21 (5). pp. 311-331. ISSN 1471-0056

Lee, S.C., Ernst, E., Berube, B., Borges, F., Parent, J. S., Ledon, P., Schorn, A., Martienssen, R. A. (April 2020) Arabidopsis Retrotransposon Virus-Like Particles and Their Regulation by Epigenetically Activated Small RNA. Genome Research, 30 (4). pp. 576-588. ISSN 1088-9051

Wang, Zhenxing, Butel, Nicolas, Santos-González, Juan, Borges, Filipe, Yi, Jun, Martienssen, Robert A, Martinez, German, Köhler, Claudia (April 2020) Polymerase IV Plays a Crucial Role in Pollen Development in Capsella. The Plant Cell, 32 (4). pp. 950-966. ISSN 1040-4651

Wang, L., Lu, Z., Delabastide, M., Van Buren, P., Wang, X., Ghiban, C., Regulski, M., Drenkow, J., Xu, X., Ortiz-Ramirez, C., Marco, C.F., Goodwin, S., Dobin, A., Birnbaum, K. D., Jackson, D. P., Martienssen, R. A., McCombie, W. R., Micklos, D. A., Schatz, M. C., Ware, D. H., Gingeras, T. R. (March 2020) Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud. Frontiers in Plant Science, 11 (289). ISSN 1664-462X (Public Dataset)

Wheeler, E., Brooks, A.M., Concia, L., Vera, D., Wear, E. E., LeBlanc, C., Ramu, U., Vaughn, M. W., Bass, H., Martienssen, R. A., Thompson, W.F., Hanley-Bowdoin, L. (March 2020) Arabidopsis DNA Replication Initiates in Intergenic, AT-rich Open Chromatin. Plant Physiology. ISSN 0032-0889 (Public Dataset)

Wang, Liya, Lu, Zhenyuan, delaBastide, Melissa, Van Buren, Peter, Wang, Xiaofei, Ghiban, Cornel, Regulski, Michael, Drenkow, Jorg, Xu, Xiaosa, Ortiz-Ramirez, Carlos, Fernandez-Marco, Cristina, Goodwin, Sara, Dobin, Alexander, Birnbaum, Kenneth, Jackson, David, Martienssen, Robert, McCombie, William, Micklos, David, Schatz, Michael, Ware, Doreen, Gingeras, Thomas (November 2019) Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud. BioRxiv. (Unpublished)

Huilgol, D., Venkataramani, P., Nandi, S., Bhattacharjee, S. (October 2019) Transcription Factors That Govern Development and Disease: An Achilles Heel in Cancer. Genes (Basel), 10 (10). ISSN 2073-4425

Bhattacharjee, S., Roche, B., Martienssen, R. A. (June 2019) RNA-induced initiation of transcriptional silencing (RITS) complex structure and function. RNA Biol, 16 (9). pp. 1133-1146. ISSN 1547-6286

Sorida, M., Hirauchi, T., Ishizaki, H., Kaito, W., Shimada, A., Mori, C., Chikashige, Y., Hiraoka, Y., Suzuki, Y., Ohkawa, Y., Kato, H., Takahata, S., Murakami, Y. (June 2019) Regulation of ectopic heterochromatin-mediated epigenetic diversification by the JmjC family protein Epe1. PLoS Genet, 15 (6). e1008129. ISSN 1553-7390

Schorn, A. J., Martienssen, R. (May 2019) Getting in LINE with Replication. Molecular Cell, 74 (3). pp. 415-417. ISSN 10972765 (ISSN)

Ghosh, D., Venkataramani, P., Nandi, S., Bhattacharjee, S. (January 2019) CRISPR-Cas9 a boon or bane: the bumpy road ahead to cancer therapeutics. Cancer Cell Int, 19. p. 12. ISSN 1475-2867 (Print)1475-2867

Ghosh, D., Nandi, S., Bhattacharjee, S. (October 2018) Combination therapy to checkmate Glioblastoma: clinical challenges and advances. Clin Transl Med, 7 (1). p. 33. ISSN 2001-1326 (Print)

Schorn, A. J., Martienssen, R. A. (October 2018) Tie-Break: Host and Retrotransposons Play tRNA. Trends in Cell Biology, 28 (10). pp. 793-806. ISSN 0962-8924

Bhattacharjee, S., Nandi, S. (September 2018) Rare Genetic Diseases with Defects in DNA Repair: Opportunities and Challenges in Orphan Drug Development for Targeted Cancer Therapy. Cancers (Basel), 10 (9). ISSN 2072-6694 (Print)2072-6694

Ikeda, Y., Nishihama, R., Yamaoka, S., Arteaga-Vazquez, M. A., Aguilar-Cruz, A., Grimanelli, D., Pogorelcnik, R., Martienssen, R. A., Yamato, K. T., Kohchi, T., Hirayama, T., Mathieu, O. (August 2018) Loss of CG methylation in Marchantia polymorpha causes disorganization of cell division and reveals unique DNA methylation regulatory mechanisms of non-CG methylation. Plant Cell Physiol, 59 (12). pp. 2421-2431. ISSN 0032-0781

Underwood, C. J., Choi, K., Lambing, C., Zhao, X., Serra, H., Borges, F., Simorowski, J., Ernst, E., Jacob, Y., Henderson, I. R., Martienssen, R. A. (April 2018) Epigenetic activation of meiotic recombination near Arabidopsis thaliana centromeres via loss of H3K9me2 and non-CG DNA methylation. Genome Res, 28 (4). pp. 519-531. ISSN 1088-9051

Choi, K., Zhao, X., Tock, A. J., Lambing, C., Underwood, C. J., Hardcastle, T. J., Serra, H., Kim, J., Cho, H. S., Kim, J., Ziolkowski, P. A., Yelina, N. E., Hwang, I., Martienssen, R. A., Henderson, I. R. (April 2018) Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions. Genome Res, 28 (4). pp. 532-546. ISSN 1088-9051

Concia, L., Brooks, A. M., Wheeler, E., Zynda, G. J., Wear, E. E., LeBlanc, C., Song, J., Lee, T. J., Pascuzzi, P. E., Martienssen, R. A., Vaughn, M. W., Thompson, W. F., Hanley-Bowdoin, L. (March 2018) Genome-Wide Analysis of the Arabidopsis Replication Timing Program. Plant Physiol, 176 (3). pp. 2166-2185. ISSN 0032-0889

Borges, F., Parent, J. S., van Ex, F., Wolff, P., Martinez, G., Kohler, C., Martienssen, R. A. (February 2018) Transposon-derived small RNAs triggered by miR845 mediate genome dosage response in Arabidopsis. Nat Genet, 50 (2). pp. 186-192. ISSN 1061-4036

Lozano-Elena, F., Planas-Riverola, A., Vilarrasa-Blasi, J., Schwab, R., Cano-Delgado, A. I. (January 2018) Paracrine brassinosteroid signaling at the stem cell niche controls cellular regeneration. J Cell Sci, 131 (2). jcs204065. ISSN 0021-9533

Lee, Y. C., Baath, J. A., Bastle, R. M., Bhattacharjee, S., Cantoria, M. J., Dornan, M., Gamero-Estevez, E., Ford, L., Halova, L., Kernan, J., Kurten, C., Li, S., Martinez, J., Sachan, N., Sarr, M., Shan, X., Subramanian, N., Rivera, K., Pappin, D., Lin, S. H. (January 2018) Impact of Detergents on Membrane Protein Complex Isolation. J Proteome Res, 17 (1). pp. 348-358. ISSN 1535-3893

Bhattacharjee, S., Nandi, S. (December 2017) Synthetic lethality in DNA repair network: A novel avenue in targeted cancer therapy and combination therapeutics. IUBMB Life, 69 (12). pp. 929-937. ISSN 1521-6543

He, H., Li, Y., Dong, Q., Chang, A. Y., Gao, F., Chi, Z., Su, M., Zhang, F., Ban, H., Martienssen, R., Chen, Y. H., Li, F. (November 2017) Coordinated regulation of heterochromatin inheritance by Dpb3-Dpb4 complex. Proc Natl Acad Sci U S A. ISSN 0027-8424

Bhattacharjee, S., Nandi, S. (October 2017) DNA damage response and cancer therapeutics through the lens of the Fanconi Anemia DNA repair pathway. Cell Commun Signal, 15 (1). p. 41. ISSN 1478-811x

Bowman, J. L., Kohchi, T., Yamato, K. T., Jenkins, J., Shu, S., Ishizaki, K., Yamaoka, S., Nishihama, R., Nakamura, Y., Berger, F., Adam, C., Aki, S. S., Althoff, F., Araki, T., Arteaga-Vazquez, M. A., Balasubrmanian, S., Barry, K., Bauer, D., Boehm, C. R., Briginshaw, L., Caballero-Perez, J., Catarino, B., Chen, F., Chiyoda, S., Chovatia, M., Davies, K. M., Delmans, M., Demura, T., Dierschke, T., Dolan, L., Dorantes-Acosta, A. E., Eklund, D. M., Florent, S. N., Flores-Sandoval, E., Fujiyama, A., Fukuzawa, H., Galik, B., Grimanelli, D., Grimwood, J., Grossniklaus, U., Hamada, T., Haseloff, J., Hetherington, A. J., Higo, A., Hirakawa, Y., Hundley, H. N., Ikeda, Y., Inoue, K., Inoue, S. I., Ishida, S., Jia, Q., Kakita, M., Kanazawa, T., Kawai, Y., Kawashima, T., Kennedy, M., Kinose, K., Kinoshita, T., Kohara, Y., Koide, E., Komatsu, K., Kopischke, S., Kubo, M., Kyozuka, J., Lagercrantz, U., Lin, S. S., Lindquist, E., Lipzen, A. M., Lu, C. W., De Luna, E., Martienssen, R. A., Minamino, N., Mizutani, M., Mizutani, M., Mochizuki, N., Monte, I., Mosher, R., Nagasaki, H., Nakagami, H., Naramoto, S., Nishitani, K., Ohtani, M., Okamoto, T., Okumura, M., Phillips, J., Pollak, B., Reinders, A., Rovekamp, M., Sano, R., Sawa, S., Schmid, M. W., Shirakawa, M., Solano, R., Spunde, A., Suetsugu, N., Sugano, S., Sugiyama, A., Sun, R., Suzuki, Y., Takenaka, M. (October 2017) Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Cell, 171 (2). 287-304.e15. ISSN 0092-8674

Roche, B., Arcangioli, B., Martienssen, R. (September 2017) New roles for Dicer in the nucleolus and its relevance to cancer. Cell Cycle, 16 (18). pp. 1643-1653. ISSN 1551-4005

Chomet, Paul, Martienssen, Rob (September 2017) Barbara McClintock’s Final Years as Nobelist and Mentor: A Memoir. Cell, 170 (6). pp. 1049-1054. ISSN 0092-8674

Wear, E. E., Song, J., Zynda, G., LeBlanc, C., Lee, T. J., Mickelson-Young, L., Concia, L., Mulvaney, P., Szymanski, E. S., Allen, G. C., Martienssen, R., Vaughn, M. W., Hanley-Bowdoin, L., Thompson, W. (September 2017) Genomic analysis of the DNA replication timing program during mitotic S phase in maize (Zea mays L.) root tips. Plant Cell, 29 (9). pp. 2126-49. ISSN 1040-4651

Zhu, K., Liu, M., Fu, Z., Zhou, Z., Kong, Y., Liang, H., Lin, Z., Luo, J., Zheng, H., Wan, P., Zhang, J., Zen, K., Chen, J., Hu, F., Zhang, C. Y., Ren, J., Chen, X. (August 2017) Plant microRNAs in larval food regulate honeybee caste development. PLoS Genet, 13 (8). e1006946. ISSN 1553-7390

Roche, B., Arcangioli, B., Martienssen, R. A. (July 2017) Transcriptional reprogramming in cellular quiescence. RNA Biol, 14 (7). pp. 843-853. ISSN 1547-6286

Schorn, A. J., Gutbrod, M. J., LeBlanc, C., Martienssen, R. (June 2017) LTR-Retrotransposon Control by tRNA-Derived Small RNAs. Cell, 170 (1). pp. 61-71. ISSN 0092-8674 (Public Dataset)

Chang, An-Yun, Castel, Stephane E., Ernst, Evan, Kim, Hyun Soo, Martienssen, Robert A. (June 2017) The Conserved RNA Binding Cyclophilin, Rct1, Regulates Small RNA Biogenesis and Splicing Independent of Heterochromatin Assembly. Cell Reports, 19 (12). pp. 2477-2489. ISSN 2211-1247

Underwood, Charles J., Henderson, Ian R., Martienssen, Robert A. (April 2017) Genetic and epigenetic variation of transposable elements in Arabidopsis. Current Opinion in Plant Biology, 36. pp. 135-141. ISSN 1369-5266

Ziolkowski, P. A., Underwood, C. J., Lambing, C., Martinez-Garcia, M., Lawrence, E. J., Ziolkowska, L., Griffin, C., Choi, K., Franklin, F. C., Martienssen, R. A., Henderson, I. R. (February 2017) Natural variation and dosage of the HEI10 meiotic E3 ligase control Arabidopsis crossover recombination. Genes Dev, 31 (3). pp. 306-317. ISSN 0890-9369

Ingouff, M., Selles, B., Michaud, C., Vu, T. M., Berger, F., Schorn, A. J., Autran, D., Van Durme, M., Nowack, M. K., Martienssen, R. A., Grimanelli, D. (January 2017) Live-cell analysis of DNA methylation during sexual reproduction in Arabidopsis reveals context and sex-specific dynamics controlled by noncanonical RdDM. Genes and Development, 31 (1). pp. 72-83. ISSN 08909369 (ISSN)

Bhattacharjee, S., Nandi, S. (December 2016) Choices have consequences: the nexus between DNA repair pathways and genomic instability in cancer. Clin Transl Med, 5 (1). p. 45. ISSN 2001-1326

Roche, B., Arcangioli, B., Martienssen, R. A. (October 2016) RNA interference is essential for cellular quiescence. Science, 354 (6313). ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Fransz, P., Linc, G., Lee, C. R., Aflitos, S. A., Lasky, J. R., Toomajian, C., Ali, H., Peters, J., van Dam, P., Ji, X., Kuzak, M., Gerats, T., Schubert, I., Schneeberger, K., Colot, V., Martienssen, R., Koornneef, M., Nordborg, M., Juenger, T. E., de Jong, H., Schranz, M. E. (October 2016) Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. Plant J, 88 (2). pp. 159-178. ISSN 1365-313X (Electronic)0960-7412 (Linking)

Choi, K., Reinhard, C., Serra, H., Ziolkowski, P. A., Underwood, C. J., Zhao, X., Hardcastle, T. J., Yelina, N. E., Griffin, C., Jackson, M., Mezard, C., McVean, G., Copenhaver, G. P., Henderson, I. R. (July 2016) Recombination Rate Heterogeneity within Arabidopsis Disease Resistance Genes. PLoS Genet, 12 (7). e1006179. ISSN 1553-7404 (Electronic)1553-7390 (Linking)

Quadrana, L., Bortolini Silveira, A., Mayhew, G. F., LeBlanc, C., Martienssen, R. A., Jeddeloh, J. A., Colot, V. (June 2016) The Arabidopsis thaliana mobilome and its impact at the species level. Elife, 5. ISSN 2050-084X (Electronic)2050-084X (Linking)

Pichugina, T., Sugawara, T., Kaykov, A., Schierding, W., Masuda, K., Uewaki, J., Grand, R. S., Allison, J. R., Martienssen, R. A., Nurse, P., Ueno, M., O'Sullivan, J. M. (January 2016) A diffusion model for the coordination of DNA replication in Schizosaccharomyces pombe. Sci Rep, 6. p. 18757. ISSN 2045-2322 (Electronic)2045-2322 (Linking)

Borges, F., Martienssen, R. A. (November 2015) The expanding world of small RNAs in plants. Nat Rev Mol Cell Biol, 16. pp. 727-741. ISSN 1471-0080 (Electronic)1471-0072 (Linking)

Parent, J. S., Jauvion, V., Bouche, N., Beclin, C., Hachet, M., Zytnicki, M., Vaucheret, H. (September 2015) Post-transcriptional gene silencing triggered by sense transgenes involves uncapped antisense RNA and differs from silencing intentionally triggered by antisense transgenes. Nucleic Acids Res, 43 (17). pp. 8464-75. ISSN 1362-4962 (Electronic)0305-1048 (Linking)

Ong-Abdullah, M., Ordway, J. M., Jiang, N., Ooi, S. E., Kok, S. Y., Sarpan, N., Azimi, N., Hashim, A. T., Ishak, Z., Rosli, S. K., Malike, F. A., Bakar, N. A., Marjuni, M., Abdullah, N., Yaakub, Z., Amiruddin, M. D., Nookiah, R., Singh, R., Low, E. L., Chan, K. L., Azizi, N., Smith, S. W., Bacher, B., Budiman, M. A., Van Brunt, A., Wischmeyer, C., Beil, M., Hogan, M., Lakey, N., Lim, C. C., Arulandoo, X., Wong, C. K., Choo, C. N., Wong, W. C., Kwan, Y. Y., Alwee, S. S., Sambanthamurthi, R., Martienssen, R. A. (September 2015) Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm. Nature, 525. pp. 533-537. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Yu, A., Saudemont, B., Bouteiller, N., Elvira-Matelot, E., Lepere, G., Parent, J. S., Morel, J. B., Cao, J., Elmayan, T., Vaucheret, H. (August 2015) Second site mutagenesis of a hypomorphic ago1 allele identifies SKI3 as an endogenous suppressor of PTGS. Plant Physiol. ISSN 1532-2548 (Electronic)0032-0889 (Linking)

Yu, A., Saudemont, B., Bouteiller, N., Elvira-Matelot, E., Lepere, G., Parent, J. S., Morel, J. B., Cao, J., Elmayan, T., Vaucheret, H. (August 2015) Second site mutagenesis of a hypomorphic ago1 allele identifies SKI3 as an endogenous suppressor of PTGS. Plant Physiol, 169 (2). pp. 1266-1274. ISSN 1532-2548 (Electronic)0032-0889 (Linking)

Martienssen, R., Moazed, D. (August 2015) RNAi and Heterochromatin Assembly. Cold Spring Harb Perspect Biol, 7 (8). ISSN 1943-0264 (Electronic)

Ren, J., Castel, S. E., Martienssen, R. A. (July 2015) Dicer in action at replication-transcription collisions. Mol Cell Oncol, 2 (3). e991224. ISSN 2372-3556 (Electronic)2372-3556 (Linking)

Akman, H. B., Selcuklu, S. D., Donoghue, M. T., Akhavantabasi, S., Sapmaz, A., Spillane, C., Yakicier, M. C., Erson-Bensan, A. E. (May 2015) ALCAM is indirectly modulated by miR-125b in MCF7 cells. Tumour Biol, 36 (5). pp. 3511-20. ISSN 1423-0380 (Electronic)1010-4283 (Linking)

Li, Y., Mukherjee, I., Thum, K. E., Tanurdzic, M., Katari, M. S., Obertello, M., Edwards, M. B., McCombie, W. R., Martienssen, R. A., Coruzzi, G. M. (April 2015) The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants. Genome Biology, 16 (1). p. 79. ISSN 1474-7596

Underwood, C. J., Martienssen, R. A. (January 2015) Argonautes team up to silence transposable elements in Arabidopsis. Embo Journal, 34 (5). pp. 579-580. ISSN 0261-4189

Parent, J. S., Bouteiller, N., Elmayan, T., Vaucheret, H. (January 2015) Respective contributions of Arabidopsis DCL2 and DCL4 to RNA silencing. Plant Journal, 81 (2). pp. 223-232. ISSN 09607412

Canto-Pastor, A., Molla-Morales, A., Ernst, E., Dahl, W., Zhai, J., Yan, Y., Meyers, B. C., Shanklin, J., Martienssen, R. (January 2015) Efficient transformation and artificial miRNA gene silencing in Lemna minor. Plant Biol (Stuttg), 17 (s1). pp. 59-65. ISSN 1435-8603

Grand, R. S., Pichugina, T., Gehlen, L. R., Jones, M. B., Tsai, P., Allison, J. R., Martienssen, R., O'Sullivan, J. M. (October 2014) Chromosome conformation maps in fission yeast reveal cell cycle dependent sub nuclear structure. Nucleic Acids Research, 42 (20). pp. 12585-12599. ISSN 0305-1048

Castel, Stephane E, Ren, Jie, Bhattacharjee, Sonali, Chang, An-Yun, Sánchez, Mar, Valbuena, Alberto, Antequera, Francisco, Martienssen, Robert A (October 2014) Dicer Promotes Transcription Termination at Sites of Replication Stress to Maintain Genome Stability. Cell, 159 (3). pp. 572-583. ISSN 0092-8674

Thiebaut, F., Rojas, C. A., Grativol, C., Motta, M. R., Vieira, T., Regulski, M., Martienssen, R. A., Farinelli, L., Hemerly, A. S., Ferreira, P. C. G. (September 2014) Genome-wide identification of microRNA and siRNA responsive to endophytic beneficial diazotrophic bacteria in maize. BMC Genomics, 15. p. 766. ISSN 1471-2164

Herridge, R. P., Day, R. C., Macknight, R. C. (September 2014) The role of the MCM2-7 helicase complex during Arabidopsis seed development. Plant Molecular Biology, 86 (1-2). pp. 69-84. ISSN 01674412

Becker, J. D., Takeda, S., Borges, F., Dolan, L., Feijo´, J. A. (August 2014) Transcriptional profiling of Arabidopsis root hairs and pollen defines an apical cell growth signature. BMC Plant Biology, 14 (1). ISSN 14712229

Grativol, C., Regulski, M., Bertalan, M., McCombie, W. R., da Silva, F. R., Zerlotini Neto, A., Vicentini, R., Farinelli, L., Hemerly, A. S., Martienssen, R. A., Ferreira, P. C. G. (July 2014) Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genus Saccharum. Plant Journal, 79 (1). pp. 162-172. ISSN 09607412

Singh, R., Low, E. T., Ooi, L. C., Ong-Abdullah, M., Nookiah, R., Ting, N. C., Marjuni, M., Chan, P. L., Ithnin, M., Manaf, M. A., Nagappan, J., Chan, K. L., Rosli, R., Halim, M. A., Azizi, N., Budiman, M. A., Lakey, N., Bacher, B., Van Brunt, A., Wang, C., Hogan, M., He, D., MacDonald, J. D., Smith, S. W., Ordway, J. M., Martienssen, R. A., Sambanthamurthi, R. (June 2014) The oil palm VIRESCENS gene controls fruit colour and encodes a R2R3-MYB. Nature Communications, 5. p. 4106. ISSN 20411723

Grand, R. S., Martienssen, R., O'Sullivan, J. M. (May 2014) Potential roles for interactions between the mitochondrial and nuclear DNA throughout the cell cycle of Schizosaccharomyces pombe. Mitochondrion, 17. pp. 141-9. ISSN 1567-7249

Heard, E., Martienssen, R. A. (March 2014) Transgenerational Epigenetic Inheritance: Myths and Mechanisms. Cell, 157 (1). pp. 95-109. ISSN 0092-8674

Creasey, K. M., Zhai, J., Borges, F., Van Ex, F., Regulski, M., Meyers, B. C., Martienssen, R. A. (March 2014) miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis. Nature, 508 (7496). pp. 411-415. ISSN 0028-0836

Jacob, Y., Bergamin, E., Donoghue, M. T., Mongeon, V., LeBlanc, C., Voigt, P., Underwood, C. J., Brunzelle, J. S., Michaels, S. D., Reinberg, D., Couture, J. F., Martienssen, R. A. (March 2014) Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication. Science, 343 (6176). pp. 1249-53. ISSN 0036-8075

Kuscu, C., Zaratiegui, M., Kim, H. S., Wah, D. A., Martienssen, R. A., Schalch, T., Joshua-Tor, L. (January 2014) CRL4-like Clr4 complex in Schizosaccharomyces pombe depends on an exposed surface of Dos1 for heterochromatin silencing. Proceedings of the National Academy of Sciences of the United States of America, 111 (5). pp. 1795-1800. ISSN 0027-8424 (Public Dataset)

Thiebaut, F., Grativol, C., Tanurdzic, M., Carnavale-Bottino, M., Vieira, T., Motta, M. R., Rojas, C., Vincentini, R., Chabregas, S. M., Hemerly, A. S., Martienssen, R. A., Ferreira, P. C. (2014) Differential sRNA Regulation in Leaves and Roots of Sugarcane under Water Depletion. PLoS One, 9 (4). e93822. ISSN 1932-6203

Yan, Yiheng, Candreva, Jason, Shi, Hai, Ernst, Evan, Martienssen, Robert, Schwender, Jorg, Shanklin, John (December 2013) Survey of the total fatty acid and triacylglycerol composition and content of 30 duckweed species and cloning of a Delta 6-desaturase responsible for the production of gamma-linolenic and stearidonic acids in Lemna gibba. BMC Plant Biology, 13. ISSN 1471-2229

Morgan, C. C., Mc Cartney, A. M., Donoghue, M. T. A., Loughran, N. B., Spillane, C., Teeling, E. C., O'Connell, M. J. (November 2013) Molecular adaptation of telomere associated genes in mammals. BMC Evolutionary Biology, 13. p. 251. ISSN 1471-2148

Vidal, E. A., Moyano, T. C., Krouk, G., Katari, M. S., Tanurdzic, M., McCombie, W. R., Coruzzi, G. M., Gutierrez, R. A. (October 2013) Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 14. p. 701. ISSN 1471-2164

Bhattacharjee, S., Osman, F., Feeney, L., Lorenz, A., Bryer, C., Whitby, M. C. (September 2013) MHF1-2/CENP-S-X performs distinct roles in centromere metabolism and genetic recombination. Open Biology, 3 (SEP). ISSN 20462441 (ISSN)

Singh, R., Ong-Abdullah, M., Low, E. T. L., Manaf, M. A. A., Rosli, R., Nookiah, R., Ooi, L. C. L., Ooi, S. E., Chan, K. L., Halim, M. A., Azizi, N., Nagappan, J., Bacher, B., Lakey, N., Smith, S. W., He, D., Hogan, M., Budiman, M. A., Lee, E. K., Desalle, R., Kudrna, D., Goicoechea, J. L., Wing, R. A., Wilson, R. K., Fulton, R. S., Ordway, J. M., Martienssen, R. A., Sambanthamurthi, R. (August 2013) Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds. Nature, 500 (7462). pp. 335-339. ISSN 00280836

Singh, R., Low, E. T. L., Ooi, L. C. L., Ong-Abdullah, M., Ting, N. C., Nagappan, J., Nookiah, R., Amiruddin, M. D., Rosli, R., Manaf, M. A. A., Chan, K. L., Halim, M. A., Azizi, N., Lakey, N., Smith, S. W., Budiman, M. A., Hogan, M., Bacher, B., Van Brunt, A., Wang, C., Ordway, J. M., Sambanthamurthi, R., Martienssen, R. A. (August 2013) The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK. Nature, 500 (7462). pp. 340-344. ISSN 00280836

Vu, T. M., Nakamura, M., Calarco, J. P., Susaki, D., Lim, P. Q., Kinoshita, T., Higashiyama, T., Martienssen, R. A., Berger, F. (July 2013) RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis. Development, 140 (14). pp. 2953-2960. ISSN 0950-1991

Regulski, M., Lu, Z., Kendall, J., Donoghue, M. T., Reinders, J., Llaca, V., Deschamps, S., Smith, A., Levy, D., McCombie, W. R., Tingey, S., Rafalski, A., Hicks, J., Ware, D., Martienssen, R. (June 2013) The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA. Genome Research, 23 (10). pp. 1651-1662. ISSN 10889051 (ISSN)

Borges, F., Martienssen, R. A. (April 2013) Establishing epigenetic variation during genome reprogramming. RNA Biology, 10 (4). pp. 490-4. ISSN 1555-8584 (Electronic)1547-6286 (Linking)

Castel, S. E., Martienssen, R. A. (February 2013) RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond. Nat Rev Genet, 14 (2). pp. 100-12. ISSN 1471-0064 (Electronic)1471-0056 (Linking)

Borges, F., Calarco, J. P., Martienssen, R. A. (2013) Reprogramming the Epigenome in Arabidopsis Pollen. Cold Spring Harbor Symposia on Quantitative Biology, 77. pp. 1-5. ISSN 00917451 (ISSN)

Holmes, A., Roseaulin, L., Schurra, C., Waxin, H., Lambert, S., Zaratiegui, M., Martienssen, R. A., Arcangioli, B. (December 2012) Lsd1 and Lsd2 Control Programmed Replication Fork Pauses and Imprinting in Fission Yeast. Cell Reports, 2 (6). pp. 1513-1520. ISSN 2211-1247

Martienssen, R. (December 2012) Reprogramming heterochromatin and its consequences in the germline. Genes & Genetic Systems, 87 (6). p. 371. ISSN 1341-7568

Paszkowski, J., Martienssen, R. A. (November 2012) Cell signaling and gene regulation. Current Opinion in Plant Biology, 15 (5). pp. 493-495. ISSN 1369-5266

Borges, F., Gardner, R., Lopes, T., Calarco, J. P., Boavida, L. C., Slotkin, R. K., Martienssen, R. A., Becker, J. D. (October 2012) FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei. Plant methods, 8 (1). p. 44. ISSN 1746-4811 (Electronic)1746-4811 (Linking)

Zaratiegui, M., Martienssen, R. A. (October 2012) SnapShot: Small RNA-Mediated Epigenetic Modifications. Cell, 151 (2). 456-456 e1. ISSN 1097-4172 (Electronic)0092-8674 (Linking)

Ren, J., Martienssen, R. A. (August 2012) Silent decision: HP1 protein escorts heterochromatic RNAs to their destiny. Embo Journal, 31 (15). pp. 3237-8. ISSN 0261-4189

Thiebaut, F., Grativol, C., Carnavale-Bottino, M., Rojas, C. A., Tanurdzic, M., Farinelli, L., Martienssen, R. A., Hemerly, A. S., Ferreira, P. C. (July 2012) Computational identification and analysis of novel sugarcane microRNAs. BMC genomics, 13. p. 290. ISSN 1471-2164 (Electronic)1471-2164 (Linking)

Han, J. J., Jackson, D., Martienssen, R. (July 2012) Pod corn is caused by rearrangement at the Tunicate1 locus. The Plant cell, 24 (7). pp. 2733-44. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Jacob, Y., Martienssen, R. (June 2012) Molecular biology. All packed up and ready to go. Science, 336 (6087). pp. 1391-1392. ISSN 0036-8075

Berger, F., Cao, X. F., Chandler, V., Dennis, L., Martienssen, R., Meyers, B., Pikaard, C., Peacock, J., Richards, E., Wagner, D., Weigel, D., Colot, V., Deal, R., Dean, C., Ecker, J., Gehring, M., Gong, Z. Z., Gregory, B., Rodrigo, G., Gutierrez-Marcos, J., Hasebe, M., Hwang, I. D., Jacobsen, S., Kakutani, T., Li, J. Y., Michaels, S., Noh, Y. S., Provart, N., Vaughn, M., Comm, EPIC Planning (June 2012) Reading the Second Code: Mapping Epigenomes to Understand Plant Growth, Development, and Adaptation to the Environment. The Plant cell, 24 (6). pp. 2257-2261. ISSN 1040-4651

Zaratiegui, M., Martienssen, R. (February 2012) The persistence of a silent memory. Nature genetics, 44 (2). pp. 118-9. ISSN 1546-1718 (Electronic)1061-4036 (Linking)

Stillman, B., Grodzicker, T., Martienssen, R., Stewart, D. (2012) The Biology of Plants. Cold Spring Harbor Symposia on Quantitative Biology, 77. ISSN 00917451 (ISSN)

Calarco, Joseph P., Martienssen, Robert A. (2012) Imprinting: DNA methyltransferases illuminate reprogramming. Current Biology, 22 (21). pp. 929-931. ISSN 0960-9822

Calarco, J. P., Borges, F., Donoghue, M, Van Ex, F., Jullien, P. E., Lopes, T., Gardner, R., Berger, F., Feijó, J. A, Becker, J. D., Martienssen, R. A. (2012) Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA. Cell, 151 (1). pp. 194-205. ISSN 0092-8674

Lee, E. K., Cibrian-Jaramillo, A., Kolokotronis, S. O., Katari, M. S., Stamatakis, A., Ott, M., Chiu, J. C., Little, D. P., Stevenson, D. W., McCombie, W. R., Martienssen, R. A., Coruzzi, G., Desalle, R. (December 2011) A functional phylogenomic view of the seed plants. PLoS genetics, 7 (12). e1002411. ISSN 1553-7404 (Electronic)1553-7390 (Linking)

Zaratiegui, M., Castel, S. E., Irvine, D. V., Kloc, A., Ren, J., Li, F., de Castro, E., Marin, L., Chang, A. Y., Goto, D., Cande, W. Z., Antequera, F., Arcangioli, B., Martienssen, R. A. (November 2011) RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II. Nature, 479 (7371). pp. 135-8. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Van Ex, F., Jacob, Y., Martienssen, R. A. (October 2011) Multiple roles for small RNAs during plant reproduction. Current opinion in plant biology, 14 (5). pp. 588-93. ISSN 1879-0356 (Electronic)1369-5266 (Linking)

Volpe, T., Martienssen, R. A. (September 2011) RNA interference and heterochromatin assembly. Cold Spring Harbor perspectives in biology, 3 (9). a003731. ISSN 1943-0264 (Electronic)

Li, F., Martienssen, R. A., Cande, W. Z. (July 2011) Coordination of DNA replication and histone modification by the Rik1-Dos2 complex. Nature, 475 (7355). 244-U2562. ISSN 0028-0836 (Public Dataset)

Rhind, N., Chen, Z., Yassour, M., Thompson, D. A., Haas, B. J., Habib, N., Wapinski, I., Roy, S., Lin, M. F., Heiman, D. I., Young, S. K., Furuya, K., Guo, Y., Pidoux, A., Chen, H. M., Robbertse, B., Goldberg, J. M., Aoki, K., Bayne, E. H., Berlin, A. M., Desjardins, C. A., Dobbs, E., Dukaj, L., Fan, L., FitzGerald, M. G., French, C., Gujja, S., Hansen, K., Keifenheim, D., Levin, J. Z., Mosher, R. A., Muller, C. A., Pfiffner, J., Priest, M., Russ, C., Smialowska, A., Swoboda, P., Sykes, S. M., Vaughn, M., Vengrova, S., Yoder, R., Zeng, Q., Allshire, R., Baulcombe, D., Birren, B. W., Brown, W., Ekwall, K., Kellis, M., Leatherwood, J., Levin, H., Margalit, H., Martienssen, R., Nieduszynski, C. A., Spatafora, J. W., Friedman, N., Dalgaard, J. Z., Baumann, P., Niki, H., Regev, A., Nusbaum, C. (May 2011) Comparative functional genomics of the fission yeasts. Science, 332 (6032). pp. 930-6. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Banks, J. A., Nishiyama, T., Hasebe, M., Bowman, J. L., Gribskov, M., Depamphilis, C., Albert, V. A., Aono, N., Aoyama, T., Ambrose, B. A., Ashton, N. W., Axtell, M. J., Barker, E., Barker, M. S., Bennetzen, J. L., Bonawitz, N. D., Chapple, C., Cheng, C., Correa, L. G. G., Dacre, M., Debarry, J., Dreyer, I., Elias, M., Engstrom, E. M., Estelle, M., Feng, L., Finet, C., Floyd, S. K., Frommer, W. B., Fujita, T., Gramzow, L., Gutensohn, M., Harholt, J., Hattori, M., Heyl, A., Hirai, T., Hiwatashi, Y., Ishikawa, M., Iwata, M., Karol, K. G., Koehler, B., Kolukisaoglu, U., Kubo, M., Kurata, T., Lalonde, S., Li, K., Li, Y., Litt, A., Lyons, E., Manning, G., Maruyama, T., Michael, T. P., Mikami, K., Miyazaki, S., Morinaga, S., Murata, T., Mueller-roeber, B., Nelson, D. R., Obara, M., Oguri, Y., Olmstead, R. G., Onodera, N., Petersen, B. L., Pils, B., Prigge, M., Rensing, S. A., Riaño-Pachón, D. M., Roberts, A. W., Sato, Y., Scheller, H. V., Schulz, B., Schulz, C., Shakirov, E. V., Shibagaki, N., Shinohara, N., Shippen, D. E., Sørensen, I., Sotooka, R., Sugimoto, N., Sugita, M., Sumikawa, N., Tanurdzic, M., Theiben, G., Ulvskov, P., Wakazuki, S., Weng, J., Willats, W. W. G. T., Wipf, D., Wolf, P. G., Yang, L., Zimmer, A. D., Zhu, Q., Mitros, T., Hellsten, U., Loqué, D., Otillar, R., Salamov, A., Schmutz, J., Shapiro, H., Lindquist, E. (May 2011) The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants. Science, 332 (6032). pp. 963-966. ISSN 00368075

Borges, F., Pereira, P. A., Slotkin, R. K., Martienssen, R. A., Becker, J. D. (March 2011) MicroRNA activity in the Arabidopsis male germline. Journal of Experimental Botany, 62 (5). pp. 1611-1620. ISSN 0022-0957

Calarco, J. P., Martienssen, R. A. (February 2011) Genome reprogramming and small interfering RNA in the Arabidopsis germline. Curr Opin Genet Dev, 21 (2). pp. 134-9. ISSN 1879-0380 (Electronic) 0959-437X (Linking)

Jacob, Y., Martienssen, R. A. (January 2011) Chromatin reprogramming: gender equality during Arabidopsis germline differentiation. Current biology, 21 (1). R20-2. ISSN 1879-0445 (Electronic)0960-9822 (Linking)

Zaratiegui, B. M., Vaughn, M. W., Irvine, D. V., Goto, D. , Watt, S., Bahler, J., Arcangioli, B., Martienssen, R. A. (January 2011) CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR. Nature, 469 (7328). pp. 112-5. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Hansen, K. R., Hazan, I., Shanker, S., Watt, S., Verhein-Hansen, J., Bahler, J., Martienssen, R. A., Partridge, J. F., Cohen, A., Thon, G. (January 2011) H3K9me-Independent Gene Silencing in Fission Yeast Heterochromatin by Clr5 and Histone Deacetylases. Plos Genetics, 7 (1). ISSN 1553-7390

Creasey, K. M., Martienssen, R. A. (2011) Germline Reprogramming of Heterochromatin in Plants. Cold Spring Harbor Symposia on Quantitative Biology, 75. pp. 269-274. ISSN 00917451 (ISSN)

Feng, W., Jacob, Y., Veley, K. M., Ding, L., Yu, X., Choe, G., Michaels, S. D. (2011) Hypomorphic alleles reveal FCA-independent roles for FY in the regulation of FLOWERING LOCUS C. Plant Physiology, 155 (3). pp. 1425-1434. ISSN 00320889 (ISSN)

Kundeti, V. K., Rajasekaran, S., Dinh, H., Vaughn, M. W., Thapar, V. (November 2010) Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs. BMC Bioinformatics, 11. p. 560.

Ren, J., Wang, C. L., Sternglanz, R. (October 2010) Promoter strength influences the S phase requirement for establishment of silencing at the Saccharomyces cerevisiae silent mating type loci. Genetics, 186 (2). pp. 551-560.

Lee, T. J., Pascuzzi, P. E., Settlage, S. B., Shultz, R. W., Tanurdzic, M., Rabinowicz, P. D., Menges, M., Zheng, P., Main, D., Murray, J. A. H., Sosinski, B., Allen, G. C., Martienssen, R. A., Hanley-Bowdoin, L., Vaughn, M. W., Thompson, W. F. (June 2010) Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state. Plos Genetics, 6 (6). pp. 1-18.

Martienssen, R. (May 2010) Small RNA Makes Its Move. Science, 328 (5980). pp. 834-835. ISSN 0036-8075

Martienssen, R. A. (April 2010) Heterochromatin, small RNA and post-fertilization dysgenesis in allopolyploid and interploid hybrids of Arabidopsis. New Phytologist, 186 (1). pp. 46-53. ISSN 0028-646X

Olmedo-Monfil, V., Durán-Figueroa, N., Arteaga-Vázquez, M., Demesa-Arévalo, E., Autran, D., Grimanelli, D., Slotkin, R. K., Martienssen, R. A., Vielle-Calzada, J. P. (March 2010) Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature, 464 (7288). pp. 628-632.

Cibrian-Jaramillo, A., De la Torre-Barcena, J. E., Lee, E. K., Katari, M. S., Little, D. P., Stevenson, D. W., Martienssen, R. A., Coruzzi, G. M., DeSalle, R. (March 2010) Using Phylogenomic Patterns and Gene Ontology to Identify Proteins of Importance in Plant Evolution. Genome Biology and Evolution, 2. pp. 225-239. ISSN 1759-6653

Schnable, P. S., Ware, D., Fulton, R. S., Stein, J. C., Wei, F., Pasternak, S., Liang, C., Zhang, J., Fulton, L., Graves, T. A., Minx, P., Reily, A. D., Courtney, L., Kruchowski, S. S., Tomlinson, C., Strong, C., Delehaunty, K., Fronick, C., Courtney, B., Rock, S. M., Belter, E., Du, F., Kim, K., Abbott, R. M., Cotton, M., Levy, A., Marchetto, P., Ochoa, K., Jackson, S. M., Gillam, B., Chen, W., Yan, L., Higginbotham, J., Cardenas, M., Waligorski, J., Applebaum, E., Phelps, L., Falcone, J., Kanchi, K., Thane, T., Scimone, A., Thane, N., Henke, J., Wang, T., Ruppert, J., Shah, N., Rotter, K., Hodges, J., Ingenthron, E., Cordes, M., Kohlberg, S., Sgro, J., Delgado, B., Mead, K., Chinwalla, A., Leonard, S., Crouse, K., Collura, K., Kudrna, D., Currie, J., He, R., Angelova, A., Rajasekar, S., Mueller, T., Lomeli, R., Scara, G., Ko, A., Delaney, K., Wissotski, M., Lopez, G., Campos, D., Braidotti, M., Ashley, E., Golser, W., Kim, H., Lee, S., Lin, J., Dujmic, Z., Kim, W., Talag, J., Zuccolo, A., Fan, C., Sebastian, A., Kramer, M., Spiegel, L., Nascimento, L., Zutavern, T., Miller, B., Ambroise, C., Muller, S., Spooner, W., Narechania, A., Ren, L., Wei, S., Kumari, S., Faga, B., Levy, M. J., McMahan, L., Van Buren, P., Vaughn, M. W. (November 2009) The B73 maize genome: complexity, diversity, and dynamics. Science, 326 (5956). pp. 1112-5. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Wei, F., Stein, J. C., Liang, C., Zhang, J., Fulton, R. S., Baucom, R. S., De Paoli, E., Zhou, S., Yang, L., Han, Y., Pasternak, S., Narechania, A., Zhang, L., Yeh, C. T., Ying, K., Nagel, D. H., Collura, K., Kudrna, D., Currie, J., Lin, J., Kim, H., Angelova, A., Scara, G., Wissotski, M., Golser, W., Courtney, L., Kruchowski, S., Graves, T. A., Rock, S. M., Adams, S., Fulton, L. A., Fronick, C., Courtney, W., Kramer, M., Spiegel, L., Nascimento, L., Kalyanaraman, A., Chaparro, C., Deragon, J. M., Miguel, P. S., Jiang, N., Wessler, S. R., Green, P. J., Yu, Y., Schwartz, D. C., Meyers, B. C., Bennetzen, J. L., Martienssen, R. A., McCombie, W. R., Aluru, S., Clifton, S. W., Schnable, P. S., Ware, D., Wilson, R. K., Wing, R. A. (November 2009) Detailed analysis of a contiguous 22-Mb region of the maize genome. PLoS genetics, 5 (11). e1000728. ISSN 1553-7404 (Electronic)1553-7390 (Linking)

Schwab, R., Maizel, A., Ruiz-Ferrer, V., Garcia, D., Bayer, M., Crespi, M., Voinnet, O., Martienssen, R. A. (June 2009) Endogenous TasiRNAs mediate non-cell autonomous effects on gene regulation in Arabidopsis thaliana. PloS one, 4 (6). e5980. ISSN 1932-6203 (Electronic)1932-6203 (Linking)

Irvine, D. V., Goto, D. B., Vaughn, M. W., Nakaseko, Y., McCombie, W. R., Yanagida, M., Martienssen, R. (June 2009) Mapping epigenetic mutations in fission yeast using whole-genome next-generation sequencing. Genome research, 19 (6). pp. 1077-83. ISSN 1088-9051 (Print)1088-9051 (Linking)

Slotkin, R. K., Vaughn, M., Borges, F., Tanurdzic, M., Becker, J. D., Feijo, J. A., Martienssen, R. A. (February 2009) Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell, 136 (3). pp. 461-72. ISSN 1097-4172 (Electronic)0092-8674 (Linking)

Cibrian-Jaramillo, A., Martienssen, R. A. (2009) Darwin's "Abominable Mystery": the role of RNA interference in the evolution of flowering plants. Cold Spring Harbor Symposia on Quantitative Biology, 74. pp. 267-273. ISSN 00917451 (ISSN)

Finigan, P., Martienssen, R. A. (December 2008) Nucleolar dominance and DNA methylation directed by small interfering RNA. Molecular Cell, 32 (6). pp. 753-4. ISSN 1097-2765

Tanurdzic, M., Vaughn, M. W., Jiang, H., Lee, T. J., Slotkin, R. K., Sosinski, B., Thompson, W. F., Doerge, R. W., Martienssen, R. A. (December 2008) Epigenomic consequences of immortalized plant cell suspension culture. PLoS biology, 6 (12). pp. 2880-95. ISSN 1545-7885 (Electronic)1544-9173 (Linking)

Meyers, B. C., Axtell, M. J., Bartel, B., Bartel, D. P., Baulcombe, D., Bowman, J. L., Cao, X., Carrington, J. C., Chen, X., Green, P. J., Griffiths-Jones, S., Jacobsen, S. E., Mallory, A. C., Martienssen, R. A., Poethig, R. S., Qi, Y., Vaucheret, H., Voinnet, O., Watanabe, Y., Weigel, D., Zhu, J. K. (December 2008) Criteria for annotation of plant MicroRNAs. The Plant cell, 20 (12). pp. 3186-90. ISSN 1040-4651 (Print)1040-4651 (Linking)

Masuda, H. P., Cabral, L. M., De Veylder, L., Tanurdzic, M., de Almeida Engler, J., Geelen, D., Inze, D., Martienssen, R. A., Ferreira, P. C., Hemerly, A. S. (October 2008) ABAP1 is a novel plant Armadillo BTB protein involved in DNA replication and transcription. EMBO Journal, 27 (20). pp. 2746-56. ISSN 1460-2075 (Electronic)0261-4189 (Linking)

Li, F., Huarte, M., Zaratiegui, M., Vaughn, M. W., Shi, Y., Martienssen, R., Cande, W. Z. (October 2008) Lid2 is required for coordinating H3K4 and H3K9 methylation of heterochromatin and euchromatin. Cell, 135 (2). pp. 272-83. ISSN 1097-4172 (Electronic)0092-8674 (Linking)

Kloc, A., Martienssen, R. (October 2008) RNAi, heterochromatin and the cell cycle. Trends in genetics, 24 (10). pp. 511-7. ISSN 0168-9525 (Print)0168-9525 (Linking)

Gruntman, E., Qi, Y., Slotkin, R. K., Roeder, T., Martienssen, R. A., Sachidanandam, R. (September 2008) Kismeth: analyzer of plant methylation states through bisulfite sequencing. BMC bioinformatics, 9. p. 371. ISSN 1471-2105 (Electronic)1471-2105 (Linking)

Martienssen, R. A. (August 2008) Great leap forward? Transposable elements, small interfering RNA and adaptive Lamarckian evolution. New Phytologist, 179 (3). pp. 570-572. ISSN 0028-646X

Kloc, A., Zaratiegui, M., Nora, E., Martienssen, R. (April 2008) RNA interference guides histone modification during the S phase of chromosomal replication. Current biology, 18 (7). pp. 490-5. ISSN 0960-9822 (Print)0960-9822 (Linking)

Weil, C., Martienssen, R. (April 2008) Epigenetic interactions between transposons and genes: lessons from plants. Current opinion in genetics & development, 18 (2). pp. 188-92. ISSN 0959-437X (Print)0959-437X (Linking)

Pinon, V., Etchells, J. P., Rossignol, P., Collier, S. A., Arroyo, J. M., Martienssen, R. A., Byrne, M. E. (April 2008) Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins. Development, 135 (7). pp. 1315-24. ISSN 0950-1991 (Print)0950-1991 (Linking)

Gutiérrez, R. A., Stokes, T. L., Thum, K., Xu, X., Obertello, M., Katari, M. S., Tanurdzic, M., Dean, A., Nero, D. C., McClung, C. R., Coruzzi, G. M. (March 2008) Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1. Proc Natl Acad Sci U S A, 105 (12). pp. 4939-4944. ISSN 0027-8424

Martienssen, R. A., Kloc, A., Slotkin, R. K., Tanurdzic, M. (2008) Epigenetic inheritance and reprogramming in plants and fission yeast. Cold Spring Harbor symposia on quantitative biology, 73. pp. 265-71. ISSN 1943-4456 (Electronic)0091-7451 (Linking)

Rosin, F. M., Watanabe, N., Cacas, Jean-Luc, Kato, N., Arroyo, J. M., Fang, Y., May, B., Vaughn, M., Simorowski, J., Ramu, U., McCombie, R., Spector, D. L., Martienssen, R. A., Lam, E. (2008) Genome-wide transposon tagging reveals location-dependent effects on transcription and chromatin organization in Arabidopsis. Plant Journal, 55 (3). pp. 514-525. ISSN 0960-7412

Jones, P. A., Archer, T. K., Baylin, S. B., Beck, S., Berger, S., Bernstein, B. E., Carpten, J. D., Clark, S. J., Costello, J. F., Doerge, R. W., Esteller, M., Feinberg, A. P., Gingeras, T. R., Greally, J. M., Henikoff, S., Herman, J. G., Jackson-Grusby, L., Jenuwein, T., Jirtle, R. L., Kim, Y. J., Laird, P. W., Lim, B., Martienssen, R., Polyak, K., Stunnenberg, H., Tlsty, T. D., Tycko, B., Ushijima, T., Zhu, J., Pirrotta, V., Allis, C. D., Elgin, S. C., Rine, J., Wu, C. (2008) Moving AHEAD with an international human epigenome project. Nature, 454 (7205). pp. 711-715. ISSN 00280836 (ISSN)

Ordway, J. M., Budiman, M. A., Korshunova, Y., Maloney, R. K., Bedell, J. A., Citek, R. W., Bacher, B., Peterson, S., Rohlfing, T., Hall, J., Brown, R., Lakey, N., Doerge, R. W., Martienssen, R. A., Leon, J., McPherson, J. D., Jeddeloh, J. A. (December 2007) Identification of novel high-frequency DNA methylation changes in breast cancer. PLoS ONE, 2 (12). e1314.

Boccara, M., Sarazin, A., Billoud, B., Jolly, V., Martienssen, R., Baulcombe, D., Colot, V. (October 2007) New approaches for the analysis of Arabidopsis thaliana small RNAs. Biochimie, 89 (10). pp. 1252-6. ISSN 0300-9084 (Print)

Yuneva, M., Zamboni, N., Oefner, P., Sachidanandam, R., Lazebnik, Y. (July 2007) Deficiency in glutamine but not glucose induces MYC-dependent apoptosis in human cells. J Cell Biol, 178 (1). pp. 93-105. ISSN 0021-9525 (Print)

Vaughn, M. W., Tanurdzic, M., Lippman, Z. B., Jiang, H., Carrasquillo, R., Rabinowicz, P. D., Dedhia, N., McCombie, W. R., Agier, N., Bulski, A., Colot, V., Doerge, R. W., Martienssen, R. A. (July 2007) Epigenetic natural variation in Arabidopsis thaliana. PLoS Biology, 5 (7). pp. 1617-1629. ISSN 1544-9173

Huarte, M., Lan, F., Kim, T. H., Vaughn, M. W., Zaratiegui, B. M., Martienssen, R. A., Buratowski, S., Shi, Y. (July 2007) The fission yeast Jmj2 reverses histone H3 lysine 4 trimethylation. Journal of Biological Chemistry, 282 (30). pp. 21662-21670. ISSN 0021-9258

Turck, F., Roudier, F., Farrona, S., Martin-Magniette, M. L., Guillaume, E., Buisine, N., Gagnot, S., Martienssen, R. A., Coupland, G., Colot, V. (June 2007) Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27. Plos Genetics, 3 (6). pp. 855-866. ISSN 1553-7390

Slotkin, R. Keith, Martienssen, Robert (April 2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet, 8 (4). pp. 272-85. ISSN 1471-0056 (Print)

Mukarami, H., Goto, D. B., Toda, T., Chen, E. S., Grewal, S. I., Martienssen, R. A., Yanagida, M. (March 2007) Ribonuclease activity of Dis3 is required for mitotic progression and provides a possible link between heterochromatin and kinetochore function. PLoS ONE, 2 (3). e317. ISSN 19326203 (ISSN)

Zaratiegui, B. M., Irvine, D. V., Martienssen, R. A. (February 2007) Noncoding RNAs and gene silencing. Cell, 128 (4). pp. 763-76. ISSN 0092-8674 (Print)

Lan, Fei, Zaratiegui, Mikel, Villen, Judit, Vaughn, Matthew W., Verdel, Andre, Huarte, Maite, Shi, Yujiang, Gygi, Steven P., Moazed, Danesh, Martienssen, Robert A., Shi, Yang (2007) S. pombe LSD1 homologs regulate heterochromatin propagation and euchromatic gene transcription. Mol Cell, 26 (1). pp. 89-8101. ISSN 1097-2765

Martienssen, R., Zaratiegui, M., Irvine, D., Goto, D., Slotkin, K., Tanurdzic, M., Lippman, Z., Vaughn, M., May, B., Cande, Z., Colot, V., Doerge, R. W. (2007) Silent running: RNA interference and heterochromatic modification. Chromosome Research, 15 (2 (Sup). pp. 20-21. ISSN 0967-3849

Ordway, J. M., Bedell, J. A., Citek, R. W., Nunberg, A., Garrido, A., Kendall, R., Stevens, J. R., Cao, D., Doerge, R. W., Korshunova, Y., Holemon, H., McPherson, J. D., Lakey, N., Leon, J., Martienssen, R. A., Jeddeloh, J. A. (December 2006) Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets. Carcinogenesis, 27 (12). pp. 2409-23. ISSN 0143-3334 (Print)0143-3334 (Linking)

Irvine, D. V., Zaratiegui, Mi., Tolia, N. H., Goto, D. B., Chitwood, D. H., Vaughn, M. W., Joshua-Tor, L., Martienssen, R. A. (August 2006) Argonaute slicing is required for heterochromatic silencing and spreading. Science, 313 (5790). pp. 1134-7. ISSN 1095-9203 (Electronic)

Ronemus, M., Vaughn, M. W., Martienssen, R. A. (July 2006) MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis. Plant Cell, 18 (7). pp. 1559-74. ISSN 1040-4651 (Print)

Garcia, D., Collier, S. A., Byrne, M. E., Martienssen, R. A. (May 2006) Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway. Curr Biol, 16 (9). pp. 933-8. ISSN 0960-9822 (Print)

Bortiri, E., Chuck, G., Vollbrecht, E., Rocheford, T. R., Martienssen, R. A., Hake, S. (March 2006) ramosa2 encodes a LATERAL ORGAN BOUNDARY domain protein that determines the fate of stem cells in branch meristems of maize. Plant Cell, 18 (3). pp. 574-585. ISSN 10404651

Locke, S. M., Martienssen, R. A. (2006) Slicing and spreading of heterochromatic silencing by RNA interference. Cold Spring Harbor Symposia on Quantitative Biology, 71. pp. 497-503. ISSN 00917451 (ISSN)

Jones, P. A., Martienssen, R. A. (December 2005) A Blueprint for a Human Epigenome Project: The AACR Human Epigenome Workshop. Cancer Res, 65 (24). pp. 11241-6. ISSN 0008-5472 (Print)

May, B. P., Lippman, Z. B., Fang, Y., Spector, D. L., Martienssen, R. A. (December 2005) Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats. PLoS Genet, 1 (6). e79. ISSN 1553-7404 (Electronic)

Vaughn, M. W., Tanurdzic, M., Martienssen, R. (December 2005) Replication, repair, and reactivation. Dev Cell, 9 (6). pp. 724-5. ISSN 1534-5807 (Print)

Rabinowicz, P. D., Citek, R., Budiman, M. A., Nunberg, A., Bedell, J. A., Lakey, N., O'Shaughnessy, A. L., Nascimento, L. U., McCombie, W. R., Martienssen, R. A. (October 2005) Differential methylation of genes and repeats in land plants. Genome Research, 15 (10). pp. 1431-1440. ISSN 1088-9051

Vaughn, M. W., Martienssen, R. (September 2005) It's a small RNA world, after all. Science, 309 (5740). pp. 1525-6. ISSN 1095-9203 (Electronic)

Nakayama, N., Arroyo, J. M., Simorowski, J., May, B., Martienssen, R., Irish, V. F. (September 2005) Gene trap lines define domains of gene regulation in Arabidopsis petals and stamens. Plant Cell, 17 (9). pp. 2486-2506. ISSN 1040-4651

Vollbrecht, E., Springer, P. S., Goh, L., Buckler, E. S. th, Martienssen, R. (August 2005) Architecture of floral branch systems in maize and related grasses. Nature, 436 (7054). pp. 1119-26. ISSN 1476-4687 (Electronic)

Martienssen, R. A., Zaratiegui, M., Goto, D. B. (August 2005) RNA interference and heterochromatin in the fission yeast Schizosaccharomyces pombe. Trends Genet, 21 (8). pp. 450-6. ISSN 0168-9525 (Print)

Li, F., Goto, D. B., Zaratiegui, M., Tang, X., Martienssen, R., Cande, W. Z. (August 2005) Two novel proteins, Dos1 and Dos2, interact with Rik1 to regulate heterochromatic RNA interference and histone modification. Current Biology, 15 (16). pp. 1448-1457. ISSN 0960-9822

Warek, U., Bedell, J., Martienssen, R., Rabinowicz, P. (June 2005) Methylation filtration - A path to rapid gene discovery. Phytopathology, 95 (6). S109-S109. ISSN 0031-949X

Kidner, C. A., Martienssen, R. A. (April 2005) The role of ARGONAUTE1 (AGO1) in meristem formation and identity. Dev Biol, 280 (2). pp. 504-17. ISSN 0012-1606 (Print)

Katari, M.t S., Balija, V., Wilson, R. K., Martienssen, R. A., McCombie, W. R. (April 2005) Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. Genome Research, 15 (4). pp. 496-504. ISSN 10889051 (ISSN)

Vaughn, M. W., Martienssen, R. A. (March 2005) Finding the right template: RNA Pol IV, a plant-specific RNA polymerase. Mol Cell, 17 (6). pp. 754-6. ISSN 1097-2765 (Print)

Lippman, Z. B., Gendrel, A. V., Colot, V., Martienssen, R. A. (March 2005) Profiling DNA methylation patterns using genomic tiling microarrays. Nat Methods, 2 (3). pp. 219-24. ISSN 1548-7091 (Print)

Gendrel, A. V., Lippman, Z. , Martienssen, R., Colot, V. (March 2005) Profiling histone modification patterns in plants using genomic tiling microarrays. Nature Methods, 2 (3). pp. 213-218. ISSN 1548-7091

Ronemus, M., Martienssen, R. (February 2005) RNA interference - Methylation mystery. Nature, 433 (7025). pp. 472-473. ISSN 0028-0836

Madlung, A., Tyagi, A. P., Watson, B., Jiang, H. M., Kagochi, T., Doerge, R. W., Martienssen, R. A., Comai, L. (January 2005) Genomic changes in synthetic Arabidopsis polyploids. Plant Journal, 41 (2). pp. 221-230. ISSN 0960-7412

Hansen, K. R., Burns, G., Mata, J., Volpe, T. A., Martienssen, R. A., Bahler, J., Thon, G. (January 2005) Global effects on gene expression in fission yeast by silencing and RNA interference machineries. Molecular and Cellular Biology, 25 (2). pp. 590-601. ISSN 0270-7306

Bedell, J. A., Budiman, M. A., Nunberg, A., Citek, R. W., Robbins, D., Jones, J., Flick, E., Rohlfing, T., Fries, J., Bradford, K., McMenamy, J., Smith, M., Holeman, H., Roe, B. A., Wiley, G., Korf, I. F., Rabinowicz, P. D., Lakey, N., McCombie, W. R., Jeddeloh, J. A., Martienssen, R. A. (January 2005) Sorghum genome sequencing by methylation filtration. PLoS Biology, 3 (1). e13. ISSN 1544-9173

Martienssen, Robert A., Doerge, R. W., Colot, Vincent (2005) Epigenomic mapping in Arabidopsis using tiling microarrays. Chromosome Res, 13 (3). pp. 299-308. ISSN 0967-3849 (Print)

Mandell, J. G., Bahler, J., Volpe, T. A., Martienssen, R. A., Cech, T. R. (2005) Global expression changes resulting from loss of telomeric DNA in fission yeast. Genome Biology, 6 (1). ISSN 1465-6914

Tanurdžić, M., Doerge, R., Martienssen, R. (2005) Microarrays: Design, analysis, and applications in functional genomics. Archive of Oncology, 13 (3-4). pp. 124-125. ISSN 03547310 (ISSN)

Kato, H., Goto, D. B., Martienssen, R. A., Urano, T., Furukawa, K., Murakami, Y. (2005) RNA polymerase II is required for RNAi-dependent heterochromatin assembly. Science, 309 (5733). pp. 467-469. ISSN 00368075 (ISSN)

Martienssen, R. A. (November 2004) Crop Plant Genome sequence: What is it good for? Crop Science, 44 (6). pp. 1898-1899. ISSN 0011-183X

Lippman, Z., Martienssen, R. A. (September 2004) The role of RNA interference in heterochromatic silencing. Nature, 431 (7006). pp. 364-70. ISSN 1476-4687 (Electronic)

Jeffrey Chen, Z., Wang, J., Tian, L., Lee, H. S., Wang, J. J., Chen, M., Lee, J. J., Josefsson, C., Madlung, A., Watson, B., Lippman, Z., Vaughn, M., Chris Pires, J., Colot, V., Doerge, R. W., Martienssen, R. A., Comai, L., Osborn, T. C. (August 2004) The development of an Arabidopsis model system for genome-wide analysis of polyploidy effects. Biological journal of the Linnean Society. Linnean Society of London, 82 (4). pp. 689-700. ISSN 0024-4066 (Print)0024-4066 (Linking)

Lippman, Z., Gendrel, A. V., Black, M., Vaughn, M. W., Dedhia, N., McCombie, W. R., Lavine, K., Mittal, V., May, B., Kasschau, K. D., Carrington, J. C., Doerge, R. W., Colot, V., Martienssen, R. (July 2004) Role of transposable elements in heterochromatin and epigenetic control. Nature, 430 (6998). pp. 471-6. ISSN 1476-4687 (Electronic)

Byrne, M., Kidney, C., Martienssen, R. (July 2004) Homeobox genes in Arabidopsis and their epigenetic regulation. Developmental Biology, 271 (2). p. 553. ISSN 0012-1606

Groover, A., Fontana, J. R., Dupper, G., Ma, C. P., Martienssen, R. A., Strauss, S., Meilan, R. (April 2004) Gene and enhancer trap tagging of vascular-expressed genes in poplar trees. Plant Physiology, 134 (4). pp. 1742-1751. ISSN 0032-0889

Martienssen, R. A., Rabinowicz, P. D., O'Shaughnessy, A., McCombie, W. R. (April 2004) Sequencing the maize genome. Curr Opin Plant Biol, 7 (2). pp. 102-7. ISSN 1369-5266 (Print)

Kidner, C. A., Martienssen, R. A. (March 2004) Spatially restricted microRNA directs leaf polarity through ARGONAUTE1. Nature, 428 (6978). pp. 81-4. ISSN 1476-4687 (Electronic)

Martienssen, R., Lippman, Z., May, B., Vaughn, M., Gendrel, A. V., Ronemus, M., Volpe, T., Kidner, C., Colot, V. (March 2004) Transposons, small interfering RNA and the origin of heterochromatin. European Journal of Cell Biology, 83 (Suppl). p. 61. ISSN 0171-9335

Bastow, R., Mylne, J. S., Lister, C., Lippman, Z., Martienssen, R. A., Dean, C. (January 2004) Vernalization requires epigenetic silencing of FLC by histone methylation. Nature, 427 (6970). pp. 164-7. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Martienssen, R. A., Rabinowicz, P. D., O'Shaughnessy, A., McCombie, W. R. (2004) Sequencing the maize genome. Current Opinion in Plant Biology, 7 (2). pp. 102-107. ISSN 13695266 (ISSN)

Martienssen, R., Lippman, Z., May, B., Ronemus, M., Vaughn, M. (2004) Transposons, tandem repeats, and the silencing of imprinted genes. Cold Spring Harbor symposia on quantitative biology, 69. pp. 371-9. ISSN 0091-7451 (Print)0091-7451 (Linking)

Palmer, L. E., Rabinowicz, P. D., O'Shaughnessy, A. L., Balija, V. S., Nascimento, L. U., Dike, S., de la Bastide, M., Martienssen, R. A., McCombie, W. R. (December 2003) Maize genome sequencing by methylation filtrations. Science, 302 (5653). pp. 2115-2117. ISSN 0036-8075

Lippman, Z., May, B., Yordan, C., Singer, T., Martienssen, R. (December 2003) Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification. PLoS biology, 1 (3). pp. 420-428. ISSN 1545-7885 (Electronic)1544-9173 (Linking)

Rabinowicz, P. D., Palmer, L. E., May, B. P., Hemann, M. T., Lowe, S. W., McCombie, W. R., Martienssen, R. A. (December 2003) Genes and transposons are differentially methylated in plants, but not in mammals. Genome Research, 13 (12). pp. 2658-64. ISSN 1088-9051

Song, J. J., Liu, J., Tolia, N. H., Schneiderman, J., Smith, S. K., Martienssen, R. A., Hannon, G. J., Joshua-Tor, L. (December 2003) The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes. Nat Struct Biol, 10 (12). pp. 1026-32. ISSN 1072-8368 (Print) (Public Dataset)

Martienssen, R. A. (November 2003) Maintenance of heterochromatin by RNA interference of tandem repeats. Nature Genetics, 35 (3). pp. 213-4. ISSN 1061-4036

Byrne, M. E., Kidner, C. A., Martienssen, R. A. (October 2003) Plant stem cells: divergent pathways and common themes in shoots and roots. Current Opinion in Genetics & Development, 13 (5). pp. 551-7. ISSN 0959-437X

May, B. P., Liu, H., Vollbrecht, E., Senior, L., Rabinowicz, P. D., Roh, D., Pan, X. K., Stein, L., Freeling, M., Alexander, D., Martienssen, R. (September 2003) Maize-targeted mutagenesis: A knockout resource for maize. Proceedings of the National Academy of Sciences of the United States of America, 100 (20). pp. 11541-11546. ISSN 0027-8424

Byrne, M. E., Groover, A. T., Fontana, J. R., Martienssen, R. A. (September 2003) Phyllotactic pattern and stem cell fate are determined by the Arabidopsis homeobox gene BELLRINGER. Development, 130 (17). pp. 3941-50. ISSN 0950-1991 (Print)0950-1991 (Linking)

Muskett, P. R., Clissold, L., Marocco, A., Springer, P. S., Martienssen, R., Dean, C. (June 2003) A resource of mapped dissociation launch pads for targeted insertional mutagenesis in the Arabidopsis genome. Plant physiology, 132 (2). pp. 506-16. ISSN 0032-0889 (Print)0032-0889 (Linking)

Osborn, T. C., Pires, J. C., Birchler, J. A., Auger, D. L., Chen, Z. J., Lee, H. S., Comai, L., Madlung, A., Doerge, R. W., Colot, V., Martienssen, R. A. (March 2003) Understanding mechanisms of novel gene expression in polyploids. Trends in Genetics, 19 (3). pp. 141-7. ISSN 0168-9525

Kidner, C. A., Martienssen, R. A. (January 2003) Macro effects of microRNAs in plants. Trends in Genetics, 19 (1). pp. 13-16. ISSN 0168-9525

Brenner, E. D., Stevenson, D. W., McCombie, R. W., Katari, M. S., Rudd, S. A., Mayer, K. F., Palenchar, P. M., Runko, S. J., Twigg, R. W., Dai, G., Martienssen, R. A., Benfey, P. N., Coruzzi, G. M. (2003) Expressed sequence tag analysis in Cycas, the most primitive living seed plant. Genome Biology, 4 (12). R78. ISSN 1474-7596

Yu, Y., Rambo, T., Currie, J., Saski, C., Kim, H. R., Collura, K., Thompson, S., Simmons, J., Yang, T. J., Nah, G., Patel, A. J., Thurmond, S., Henry, D., Oates, R., Palmer, M., Pries, G., Gibson, J., Anderson, H., Paradkar, M., Crane, L., Dale, J., Carver, M. B., Wood, T., Frisch, D., Engler, F., Soderlund, C., Palmer, L. E., Tetylman, L., Nascimento, L., de la Bastide, M., Spiegel, L., Ware, D., O'Shaughnessy, A., Dike, S., Dedhia, N., Preston, R., Huang, E., Ferraro, K., Kuit, K., Miller, B., Zutavern, T., Katzenberger, F., Muller, S., Balija, V., Martienssen, R. A., Stein, L., Minx, P., Johnson, D., Cordum, H., Mardis, E., Cheng, Z., Jiang, J., Wilson, R., McCombie, W. R., Wing, R. A., Yuan, Q., Ouyang, S., Liu, J., Jones, K. M., Gansberger, K., Moffat, K., Hill, J., Tsitrin, T., Overton, L., Bera, J., Kim, M., Jin, S., Tallon, L., Ciecko, A., Pai, G., van Aken, S., Utterback, T., Reidmuller, S., Bormann, J., Feldblyum, T., Hsiao, J., Zismann, V., Blunt, S., de Vazeilles, A., Shaffer, T., Koo, H., Suh, B., Yang, Q., Haas, B., Peterson, J., Pertea, M., Volfovsky, N., Wortman, J., White, O., Salzberg, S. L., Fraser, C. M., Robin Buell, C., Messing, J., Song, R., Fuks, G., Llaca, V., Kovchak, S., Young, S., Bowers, J. E., Paterson, A. H. (2003) In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 300 (5625). pp. 1566-1569. ISSN 00368075 (ISSN)

Volpe, T., Schramke, V., Hamilton, G. L., White, S. A., Teng, G., Martienssen, R. A., Allshire, R. C. (2003) RNA interference is required for normal centromere function in fission yeast. Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 11 (2). pp. 137-46. ISSN 0967-3849 (Print)0967-3849 (Linking)

Groover, A. T., Fontana, J. R., Arroyo, J. M., Yordan, C., McCombie, W. R., Martienssen, R. A. (2003) Secretion trap tagging of secreted and membrane-spanning proteins using Arabidopsis gene traps. Plant Physiology, 132 (2). pp. 698-708. ISSN 00320889 (ISSN)

May, B. P., Martienssen, R. A. (2003) Transposon mutagenesis in the study of plant development. Critical Reviews in Plant Sciences, 22 (1). pp. 1-35. ISSN 0735-2689

Volpe, T. A., Kidner, C., Hall, I. M., Teng, G., Grewal, S. I., Martienssen, R. A. (September 2002) Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science, 297 (5588). pp. 1833-7. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Gendrel, A. V., Lippman, Z., Yordan, C., Colot, V., Martienssen, R. A. (September 2002) Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1. Science, 297 (5588). pp. 1871-1873. ISSN 0036-8075

Mylona, P., Linstead, P., Martienssen, R., Dolan, L. (September 2002) SCHIZORIZA controls an asymmetric cell division and restricts epidermal identity in the Arabidopsis root. Development, 129 (18). pp. 4327-4334. ISSN 0950-1991

Mardis, E., McPherson, J., Martienssen, R., Wilson, R. K., McCombie, W. R. (May 2002) What is finished, and why does it matter. Genome Research, 12 (5). pp. 669-671. ISSN 1088-9051

Venglat, S. P., Dumonceaux, T., Rozwadowski, K., Parnell, L., Babic, V., Keller, W., Martienssen, R., Selvaraj, G., Datla, R. (April 2002) The homeobox gene BREVIPEDICELLUS is a key regulator of inflorescence architecture in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, 99 (7). pp. 4730-5. ISSN 0027-8424 (Print)0027-8424 (Linking)

Byrne, M. E., Simorowski, J., Martienssen, R. A. (April 2002) ASYMMETRIC LEAVES1 reveals knox gene redundancy in Arabidopsis. Development, 129 (8). pp. 1957-1965. ISSN 0950-1991

Kidner, C. A., Timmermans, M. C. P., Byrne, M. E., Martienssen, R. A. (2002) Developmental genetics of the angiosperm leaf. Advances in Botanical Research, 38. pp. 191-234. ISSN 0065-2296

Budziszewski, G. J., Lewis, S. P., Glover, L. W., Reineke, J., Jones, G., Ziemnik, L. S., Lonowski, J., Nyfeler, B., Aux, G., Zhou, Q., McElver, J., Patton, D. A., Martienssen, R., Grossniklaus, U., Ma, H., Law, M., Levin, J. Z. (December 2001) Arabidopsis genes essential for seedling viability: Isolation of Insertional mutants and molecular cloning. Genetics, 159 (4). pp. 1765-1778. ISSN 0016-6731

Martienssen, R. A., Colot, V. (August 2001) DNA methylation and epigenetic inheritance in plants and filamentous fungi. Science, 293 (5532). pp. 1070-1074. ISSN 0036-8075

Thomas, S. R., Vollbrecht, E. W., Meglen, R. (April 2001) Functional genomics approach to maize cell wall biochemistry. Abstracts of Papers of the American Chemical Society, 221. U193-U193. ISSN 0065-7727

Martienssen, R. (March 2001) Chipping away at chromatin. Nature Genetics, 27 (3). pp. 240-241. ISSN 1061-4036

Rabinowicz, P. D. (March 2001) Genomics in Latin America: Reaching the Frontiers. Genome Research, 11 (3). pp. 319-322. ISSN 1088-9051

Singer, T., Yordan, C., Martienssen, R. A. (March 2001) Robertson's Mutator transposons in A-thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1). Genes & Development, 15 (5). pp. 591-602. ISSN 0890-9369

Byrne, M., Timmermans, M., Kidner, C., Martienssen, R. (February 2001) Development of leaf shape. Current Opinion in Plant Biology, 4 (1). pp. 38-43. ISSN 1369-5266

Settles, A. M., Baron, A., Barkan, A., Martienssen, R. A. (January 2001) Duplication and suppression of chloroplast protein translocation genes in maize. Genetics, 157 (1). pp. 349-360. ISSN 0016-6731

Rabinowicz, P. D., Byrne, M. E. (2001) Follow that plant! Genome Biology, 2 (2). ISSN 1474-7596

Martienssen, R., McCombie, W. R. (2001) The first plant genome. Cell, 105 (5). pp. 571-574. ISSN 00928674 (ISSN)

Petersen, M., Brodersen, P., Naested, H., Andreasson, E., Lindhart, U., Johansen, B., Nielsen, H. B., Lacy, M., Austin, M. J., Parker, J. E., Sharma, S. B., Klessig, D. F., Martienssen, R., Mattsson, O., Jensen, A. B., Mundy, J. (December 2000) Arabidopsis MAP kinase 4 negatively regulates systemic acquired resistance. Cell, 103 (7). pp. 1111-1120. ISSN 0092-8674

Byrne, M. E., Barley, R., Curtis, M., Arroyo, J. M., Dunham, M., Hudson, A., Martienssen, R. A. (December 2000) Asymmetric leaves1 mediates leaf patterning and stem cell function in Arabidopsis. Nature, 408 (6815). pp. 967-971. ISSN 0028-0836

Rabinowicz, P. D., Grotewold, E. (November 2000) A novel reverse-genetic approach (SIMF) identifies Mutator insertions in new Myb genes. Planta, 211 (6). pp. 887-893. ISSN 0032-0935

Rabinowicz, P. D. (July 2000) Are obese plant genomes on a diet? Genome Research, 10 (7). pp. 893-894. ISSN 1088-9051

Kidner, C., Sundaresan, V., Roberts, K., Dolan, L. (July 2000) Clonal analysis of the Arabidopsis root confirms that position, not lineage, determines cell fate. Planta, 211 (2). pp. 191-199. ISSN 0032-0935

Groover, A. T., Martienssen, R. M. (June 2000) Identifying genes involved in pattern formation using Arabidopsis genetraps. Developmental Biology, 222 (1). p. 226. ISSN 0012-1606

Chory, J., Ecker, J. R., Briggs, S., Caboche, M., Coruzzi, G. M., Cook, D., Dangl, J., Grant, S., Guerinot, M. L., Henikoff, S., Martienssen, R., Okada, K., Raikhel, N. V., Somerville, C. R., Weigel, D. (June 2000) National Science Foundation Sponsored Workshop report: "The 2010 Project" - Functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them. Plant Physiology, 123 (2). pp. 423-425. ISSN 0032-0889

Springer, P. S., Holding, D. R., Groover, A., Yordan, C., Martienssen, R. A. (May 2000) The essential Mcm7 protein PROLIFERA is localized to the nucleus of dividing cells during the G(1) phase and is required maternally for early Arabidopsis development. Development, 127 (9). pp. 1815-1822. ISSN 0950-1991

Park, S. H., Chin, H. G., Cho, M. J., Martienssen, R. A., Han, C. D. (April 2000) Inhibitor of striate conditionally suppresses cell proliferation in variegated maize. Genes & Development, 14 (8). pp. 1005-1016. ISSN 0890-9369

Thomas, S. R., Meglen, B., Davis, M., Vollbrecht, E. W. (March 2000) Identification of maize cell-wall mutations using near-IR spectroscopy: Implications for biomass to ethanol conversion. Abstracts of Papers of the American Chemical Society, 219. U525-U525. ISSN 0065-7727

Ferrandiz, C., Gu, Q., Martienssen, R., Yanofsky, M. F. (February 2000) Redundant regulation of meristem identity and plant architecture by FRUITFULL, APETALA1 and CAULIFLOWER. Development, 127 (4). pp. 725-734. ISSN 0950-1991

Kaul, S., Koo, H. L., Jenkins, J., Rizzo, M., Rooney, T., Tallon, L. J., Feldblyum, T., Nierman, W., Benito, M. I., Lin, X., Town, C. D., Venter, J. C., Fraser, C. M., Tabata, S., Nakamura, Y., Kaneko, T., Sato, S., Asamizu, E., Kato, T., Kotani, H., Sasamoto, S., Ecker, J. R., Theologis, A., Federspiel, N. A., Palm, C. J., Osborne, B. I., Shinn, P., Dewar, K., Kim, C. J., Buehler, E., Dunn, P., Chao, Q., Chen, H., Vysotskaia, V. S., Lenz, C. A., Hansen, N. F., Liu, S. X., Alta, H., Sakano, H., Lam, B., Pham, P. K., Nguyen, M., Yu, G., Southwick, A., Lee, J. M., Miranda, M., Toriumi, M. J., Davis, R. W., Conway, A. B., Conn, L., Hootan, A., Wambutt, R., Murphy, G., Düsterhöft, A., Stiekema, W., Pohl, T., Entian, K. D., Terryn, N., Volckaert, G., Salanoubat, M., Choisne, N., Artiguenave, F., Weissenbach, J., Quetier, F., Rieger, M., Ansorge, W., Unseld, M., Fartmann, B., Valle, G., Wilson, R. K., Sekhon, M., Pepin, K., Murray, J., Johnson, D., Hillier, L., de la Bastide, M., Huang, E., Spiegel, L., Gnoj, L., Habermann, K., Dedhia, N., Parnell, L., Preston, R., Marra, M., McCombie, W. R., Chen, E., Martienssen, R., Mayer, K., Lemcke, K., Haas, B., Haase, D., Rudd, S., Schoof, H., Frishman, D., Morgenstern, B., Zaccaria, P., Mewes, H. W., White, O., Creasy, T. H., Bielke, C. (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408 (6814). pp. 796-815. ISSN 00280836 (ISSN)

Tabata, S., Kaneko, T., Nakamura, Y., Kotani, H., Kato, T., Asamizu, E., Miyajima, N., Sasamoto, S., Kimura, T., Hosouchi, T., Kawashima, K., Kohara, M., Matsumoto, M., Matsuno, A., Muraki, A., Nakayama, S., Nakazaki, N., Naruo, K., Okumura, S., Shinpo, S., Takeuchi, C., Wada, T., Watanabe, A., Yamada, M., Yasuda, M., Sato, S., de la Bastide, M., Huang, E., Spiegel, L., Gnoj, L., O'Shaughnessy, A., Preston, R., Habermann, K., Murray, J., Johnson, D., Rohlfing, T., Nelson, J., Stoneking, T., Pepin, K., Spieth, J., Sekhon, M., Armstrong, J., Becker, M., Belter, E., Cordum, H., Cordes, M., Courtney, L., Courtney, W., Dante, M., Du, H., Edwards, J., Fryman, J., Haakensen, B., Lamar, E., Latreille, P., Leonard, S., Meyer, R., Mulvaney, E., Ozersky, P., Riley, A., Strowmatt, C., Wagner-McPherson, C., Wollam, A., Yoakum, M., Bell, M., Dedhia, N., Parnell, L., Shah, R., Rodriguez, M., See, L. H., Vil, D., Baker, J., Kirchoff, K., Toth, K., King, L., Bahret, A., Miller, B., Marra, M., Martienssen, R., McCombie, W. R., Wilson, R. K., Murphy, G., Bancroft, I., Volckaert, G., Wambutt, R., Düsterhöft, A., Stiekema, W., Pohl, T., Entian, K. D., Terryn, N., Hartley, N., Bent, E., Johnson, S., Langham, S. A., McCullagh, B., Robben, J., Grymonprez, B., Zimmermann, W., Ramsperger, U., Wedler, H. (2000) Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Nature, 408 (6814). pp. 823-826. ISSN 00280836 (ISSN)

Martienssen, R. A. (2000) Weeding out the genes: the Arabidopsis genome project. Functional & Integrative Genomics, 1 (1). pp. 2-11. ISSN 1438-793X

McCombie, W. R., De la Bastide, M., Habermann, K., Parnell, L., Dedhia, N., Gnoj, L., Schutz, K., Huang, E., Spiegel, L., Yordan, C., Sehkon, M., Murray, J., Sheet, P., Cordes, M., Threideh, J., Stoneking, T., Kalicki, J., Graves, T., Harmon, G., Edwards, J., Latreille, P., Courtney, L., Cloud, J., Abbott, A., Scott, K., Johnson, D., Minx, P., Bentley, D., Fulton, B., Miller, N., Greco, T., Kemp, K., Kramer, J., Fulton, L., Mardis, E., Dante, M., Pepin, K., Hillier, L., Nelson, J., Spieth, J., Simorowski, J., May, B., Ma, P., Preston, R., Vil, D., Lei, H. S., Shekher, M., Matero, A., Shah, R., Swaby, I., O'Shaughnessy, A., Rodriguez, M., Hoffman, J., Till, S., Granat, S., Shohdy, N., Hasegawa, A., Hameed, A., Lodhi, M., Johnson, A., Chen, E., Marra, M., Wilson, R. K., Martienssen, R. (2000) The complete sequence of a heterochromatic island from a higher eukaryote. Cell, 100 (3). pp. 377-386. ISSN 00928674 (ISSN)

Mayer, K., Schuller, C., Wambutt, R., Murphy, G., Volckaert, G., Pohl, T., Dusterhoft, A., Stiekema, W., Entian, K. D., Terryn, N., Harris, B., Ansorge, W., Brandt, P., Grivell, L., Rieger, M., Weichselgartner, M., de Simone, V., Obermaier, B., Mache, R., Muller, M., Kreis, M., Delseny, M., Puigdomenech, P., Watson, M., Schmidtheini, T., Reichert, B., Portatelle, D., Perez-Alonso, M., Boutry, M., Bancroft, I., Vos, P., Hoheisel, J., Zimmermann, W., Wedler, H., Ridley, P., Langham, S. A., McCullagh, B., Bilham, L., Robben, J., Van der Schueren, J., Grymonprez, B., Chuang, Y. J., Vandenbussche, F., Braeken, M., Weltjens, I., Voet, M., Bastiaens, I., Aert, R., Defoor, E., Weitzenegger, T., Bothe, G., Ramsperger, U., Hilbert, H., Braun, M., Holzer, E., Brandt, A., Peters, S., van Staveren, M., Dirske, W., Mooijman, P., Klein Lankhorst, R., Rose, M., Hauf, J., Kotter, P., Berneiser, S., Hempel, S., Feldpausch, M., Lamberth, S., Van den Daele, H., De Keyser, A., Buysshaert, C., Gielen, J., Villarroel, R., De Clercq, R., Van Montagu, M., Rogers, J., Cronin, A., Quail, M., Bray-Allen, S., Clark, L., Doggett, J., Hall, S., Kay, M., Lennard, N., McLay, K., Mayes, R., Pettett, A., Rajandream, M. A., Lyne, M., Benes, V., Rechmann, S., Borkova, D., Blocker, H., Scharfe, M., Grimm, M., Lohnert, T. H., Dose, S., de Haan, M., Maarse, A., Schafer, M., Müller-Auer, S., Gabel, C., Fuchs, M., Fartmann, B., Granderath, K., Dauner, D., Herzl, A., Neumann, S., Argiriou, A., Vitale, D., Liguori, R., Piravandi, E., Massenet, O., Quigley, F., Clabauld, G., Mundlein, A., Felber, R., Schnabl, S., Hiller, R., Schmidt, W., Lecharny, A., Aubourg, S., Chefdor, F., Berger, C., Montfort, A., Casacuberta, E., Gibbons, T., Weber, N., Vandenbol, M., Bargues, M., Terol, J., Perez-Perez, A., Purnelle, B., Bent, E., Johnson, S., Tacon, D., Jesse, T., Heijnen, L., Schwarz, S., Scholler, P., Heber, S., Francs, P., Bielke, C., Frishman, D., Haase, D., Lemcke, K., Mewes, H. W., Stocker, S., Zaccaria, P., Bevan, M., Wilson, R. K., de la Bastide, M., Habermann, K., Parnell, L., Dedhia, N., Gnoj, L., Schutz, K., Huang, E., Spiegel, L., Sehkon, M., Murray, J., Sheet, P., Cordes, M., Abu-Threideh, J., Stoneking, T., Kalicki, J., Graves, T., Harmon, G., Edwards, J., Latreille, P., Courtney, L., Cloud, J., Abbott, A., Scott, K., Johnson, D., Minx, P., Bentley, D., Fulton, B., Miller, N., Greco, T., Kemp, K., Kramer, J., Fulton, L., Mardis, E., Pepin, K., Hillier, L., Nelson, J., Spieth, J., Ryan, E., Andrews, S., Geisel, C., Layman, D., Du, H., Ali, J., Berghoff, A., Jones, K., Drone, K., Cotton, M., Joshu, C., Antonoiu, B., Zidanic, M., Strong, C., Sun, H., Lamar, B., Yordan, C., Ma, P., Zhong, J., Preston, R., Vil, D., Shekher, M., Matero, A., Shah, R., Swaby, I.K., O'Shaughnessy, A., Rodriguez, M., Hoffmann, J., Till, S., Granat, S., Shohdy, N., Hasegawa, A., Hameed, A., Lodhi, M., Johnson, A., Chen, E., Marra, M., Martienssen, R., McCombie, W. R. (December 1999) Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Nature, 402 (6763). pp. 769-77. ISSN 0028-0836 (Print)0028-0836 (Linking)

Martienssen, R., Irish, V. (November 1999) Copying out our ABCs - the role of gene redundancy in interpreting genetic hierarchies. Trends in Genetics, 15 (11). pp. 435-437. ISSN 0168-9525

Rabinowicz, P. D., Braun, E. L., Wolfe, A. D., Bowen, B., Grotewold, E. (September 1999) Maize R2R3 Myb genes: Sequence analysis reveals amplification in the higher plants. Genetics, 153 (1). pp. 427-44. ISSN 0016-6731 (Print)

Mozo, T., Dewar, K., Dunn, P., Ecker, J. R., Fischer, S., Kloska, S., Lehrach, H., Marra, M., Martienssen, R., Meier-Ewert, S., Altmann, T. (July 1999) A complete BAC-based physical map of the Arabidopsis thaliana genome. Nature Genetics, 22 (3). pp. 271-275. ISSN 1061-4036

Martienssen, R., Henikoff, S. (May 1999) The House & Garden guide to chromatin remodelling. Nature Genetics, 22 (1). pp. 6-7. ISSN 1061-4036

Bevan, M., Bancroft, I., Mewes, H. W., Martienssen, R., McCombie, R. (1999) Clearing a path through the jungle: Progress in Arabidopsis genomics. Bioessays, 21 (2). pp. 110-120. ISSN 02659247 (ISSN)

Rabinowicz, P. D., Schutz, K., Dedhia, N., Yordan, C., Parnell, L. D., Stein, L., McCombie, W. R., Martienssen, R. A. (1999) Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome. Nature Genetics, 23 (3). pp. 305-308. ISSN 10614036 (ISSN)

Copenhaver, G. P., Nickel, K., Kuromori, T., Benito, M. I., Kaul, S., Lin, X., Bevan, M., Murphy, G., Harris, B., Parnell, L. D., McCombie, W. R., Martienssen, R. A., Marra, M., Preuss, D. (1999) Genetic definition and sequence analysis of Arabidopsis centromeres. Science, 286 (5449). pp. 2468-2474. ISSN 00368075 (ISSN)

Marra, M., Kucaba, T., Sekhon, M., Hillier, L., Martienssen, R., Chinwalla, A., Crockett, J., Fedele, J., Grover, H., Gund, C., McCombie, W. R., McDonald, K., McPherson, J., Mudd, N., Parnell, L., Schein, J., Seim, R., Shelby, P., Waterston, R., Wilson, R. (1999) A map for sequence analysis of the Arabidopsis thaliana genome. Nature Genetics, 22 (3). pp. 265-270. ISSN 10614036 (ISSN)

Settles, A. M., Martienssen, R. (December 1998) Old and new pathways of protein export in chloroplasts and bacteria. Trends in Cell Biology, 8 (12). pp. 494-501. ISSN 0962-8924

Martienssen, R. (July 1998) Transposons, DNA methylation and gene control. Trends in Genetics, 14 (7). pp. 263-264. ISSN 0168-9525

Martienssen, R. (April 1998) Chromosomal imprinting in plants. Current Opinion in Genetics & Development, 8 (2). pp. 240-244. ISSN 0959-437X

Gu, Q., Ferrandiz, C., Yanofsky, M. F., Martienssen, R. (April 1998) The FRUITFULL MADS-box gene mediates cell differentiation during Arabidopsis fruit development. Development, 125 (8). pp. 1509-1517. ISSN 0950-1991

Bevan, M., Bennetzen, J. L., Martienssen, R. (April 1998) Genome studies and molecular evolution commonalities, contrasts, continuity and change in plant genomes. Current Opinion in Plant Biology, 1 (2). pp. 101-102. ISSN 1369-5266

Martienssen, R. A. (March 1998) Functional genomics: Probing plant gene function and expression with transposons. Proceedings of the National Academy of Sciences of the United States of America, 95 (5). pp. 2021-2026. ISSN 0027-8424

Settles, A. M., Byrne, M. (February 1998) Opportunities and challenges grow from Arabidopsis genome sequencing. Genome Research, 8 (2). pp. 83-5. ISSN 1088-9051 (Print)

Settles, A. M., Yonetani, A., Baron, A., Bush, D. R., Cline, K., Martienssen, R. (November 1997) Sec-independent protein translocation by the maize Hcf106 protein. Science, 278 (5342). pp. 1467-1470. ISSN 0036-8075

Martienssen, R. (September 1997) Cell death: Fatal induction in plants. Current Biology, 7 (9). R534-R537. ISSN 0960-9822

Martienssen, R. (April 1997) Evolutionary biology - The origin of maize branches out. Nature, 386 (6624). 443&445. ISSN 0028-0836

Bevan, M., Ecker, J., Theologis, S., Federspiel, N., Davis, R., McCombie, D., Martienssen, R., Chen, E., Waterston, B., Wilson, R., Rounsley, S., Venter, C., Tabata, S., Salanoubat, M., Quetier, F., Cherry, J. M., Meinke, D. (April 1997) Objective: The complete sequence of a plant genome. Plant cell, 9 (4). pp. 476-478. ISSN 1040-4651

Martienssen, R. (April 1997) The origin of maize branches out. Nature, 386 (6624). p. 443. ISSN 0028-0836

Martienssen, R. (July 1996) Epigenetic phenomena: Paramutation and gene silencing in plants. Current Biology, 6 (7). pp. 810-813. ISSN 0960-9822

Nussaume, L., Harrison, K., Klimyuk, V., Martienssen, R., Sundaresan, V., Jones, J. D. G. (November 1995) Analysis of splice donor and acceptor site function in a transposable gene trap derived from the maize element Activator. Molecular & General Genetics, 249 (1). pp. 91-101. ISSN 0026-8925

Sundaresan, V., Springer, P., Volpe, T., Haward, S., Jones, J. D. G., Dean, C., Ma, H., Martienssen, R. (July 1995) Patterns of Gene-Action in Plant Development Revealed by Enhancer Trap and Gene Trap Transposable Elements. Genes & development, 9 (14). pp. 1797-1810. ISSN 0890-9369

Sundaresan, V., Springer, P., Volpe, T., Haward, S., Jones, J. D. G., Dean, C., Ma, H., Martienssen, R. (July 1995) Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements. Genes & Development, 9 (14). pp. 1797-1810. ISSN 0890-9369

Springer, P. S., McCombie, W. R., Sundaresan, V., Martienssen, R. A. (May 1995) Gene trap tagging of PROLIFERA, an essential MCM2-3-5-like gene in Arabidopsis. Science, 268 (5212). pp. 877-880. ISSN 0036-8075

Das, L., Martienssen, R. (March 1995) Site-selected transposon mutagenesis at the hcf106 locus in maize. Plant Cell, 7 (3). pp. 287-294. ISSN 1040-4651

Han, C. D., Derby, R. J., Schnable, P. S., Martienssen, R. A. (1995) Characterization of the plastids affected by class-ii albino mutations of maize at the morphological and transcript levels. Maydica, 40 (1). pp. 13-22. ISSN 0025-6153

Martienssen, R. A., Richards, E. J. (1995) DNA methylation in eukaryotes. Current Opinion in Genetics and Development, 5 (2). pp. 234-242. ISSN 0959437X (ISSN)

Martienssen, R., Baron, A. (March 1994) Coordinate suppression of mutations caused by Robertson's mutator transposons in maize. Genetics, 136 (3). pp. 1157-1170. ISSN 0016-6731

Vongs, A., Kakutani, T., Martienssen, R. A., Richards, E. J. (June 1993) Arabidopsis thaliana DNA methylation mutants. Science, 260 (5116). pp. 1926-1928. ISSN 0036-8075

Han, C. D., Coe, E. H., Martienssen, R. A. (1992) Molecular cloning and characterization of iojap (ij), a pattern striping gene of maize. EMBO J, 11 (11). pp. 4037-4046. ISSN 0261-4189

Barkan, A., Martienssen, R. A. (April 1991) Inactivation of maize transposon Mu suppresses a mutant phenotype by activating an outward-reading promoter near the end of Mu1. Proceedings of the National Academy of Sciences of the United States of America, 88 (8). pp. 3502-3506. ISSN 0027-8424

Doseff, A., Martienssen, R., Sundaresan, V. (February 1991) Somatic excision of the Mu1 transposable element of maize. Nucleic Acids Research, 19 (3). pp. 579-584. ISSN 0305-1048

Martienssen, R., Barkan, A., Taylor, W. C., Freeling, M. (1990) Somatically heritable switches in the DNA modification of Mu transposable elements monitored with a suppressible mutant in maize. Genes and Development, 4 (3). pp. 331-343. ISSN 08909369 (ISSN)

Martienssen, R. A., Barkan, A., Freeling, M., Taylor, W. C. (1989) Molecular cloning of a maize gene involved in photosynthetic membrane organization that is regulated by Robertson's Mutator. EMBO J, 8 (6). pp. 1633-1639. ISSN 0261-4189

Martienssen, R. A., Baulcombe, D. C. (1989) An unusual wheat insertion sequence (WIS1) lies upstream of an alpha-amylase gene in hexaploid wheat, and carries a "minisatellite" array. Mol Gen Genet, 217 (2-3). pp. 401-410. ISSN 0026-8925

Huttly, A. K., Martienssen, R. A., Baulcombe, D. C. (1988) Sequence heterogeneity and differential expression of the alpha-Amy2 gene family in wheat. Mol Gen Genet, 214 (2). pp. 232-240. ISSN 0026-8925

Baulcombe, D., Huttly, A., Martienssen, R. (1987) Hormonal and development control of gene expression in wheat. Biochem Soc Trans, 15 (1). pp. 9-11. ISSN 0300-5127

Taylor, W. C., Barkan, A., Martienssen, R. A. (1987) Use of nuclear mutants in the analysis of chloroplast development. Dev Genet, 8 (5-6). pp. 305-320. ISSN 0192-253X

Baulcombe, D., Lazarus, C., Martienssen, R. (1984) Gibberellins and gene control in cereal aleurone cells. J Embryol Exp Morphol, 83 Sup. pp. 119-135. ISSN 0022-0752

Pfeifer, F., Betlach, M., Martienssen, R., Friedman, J., Boyer, H. W. (1983) Transposable elements of halobacterium-halobium. Molecular & General Genetics, 191 (2). pp. 182-188. ISSN 0026-8925

Book Section

Rabinowicz, Pablo D. (2003) Constructing gene-enriched plant genomic libraries using methylation filtration technology. In: Plant functional genomics: methods and protocols. Methods in Molecular Biology, 236 . Humana Press, pp. 21-36.

Martienssen, R., Dolan, L. (1998) Patterns of Vegetative Development. In: Arabidopsis. Sheffield Academic Press, Sheffield, England. ISBN 0849397324

Martienssen, R. A. (1996) Epigenetic Silencing of Mu Transposable Elements in Maize. In: Epigenetic Mechanisms of Gene Regulation. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y., p. 593. ISBN 0270-1847

Thesis

Berube, Benjamin (August 2021) Epigenetic Control of Meiotic Recombination and Drive. PhD thesis, Cold Spring Harbor Laboratory.

Gutbrod, Michael J. (November 2019) Chromosomal Functions of RNA Interference and Small RNAs in Early Mammalian Development. PhD thesis, Cold Spring Harbor Laboratory.

Castel, S. E. (September 2014) Transcriptional regulation in the context of DNA replication by RNA interference in fission yeast. PhD thesis, Cold Spring Harbor Laboratory.

Calarco, Joseph P. (2013) Chromatin Dynamics during Germline Development. PhD thesis, Cold Spring Harbor Laboratory.

Finigan, P. (August 2011) The origin of novel phenotypic variation in Arabidopsis allopolyploids. PhD thesis, Cold Spring Harbor Laboratory.

Lippman, Z. B. (December 2004) Transposons, heterochromatin, and epigenetic landscapes in Arabidopsis thaliana. PhD thesis, Cold Spring Harbor Laboratory.