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Ranallo-Benavidez, T Rhyker, Lemmon, Zachary, Soyk, Sebastian, Aganezov, Sergey, Salerno, William J, McCoy, Rajiv C, Lippman, Zachary B, Schatz, Michael C, Sedlazeck, Fritz J (May 2021) Optimized sample selection for cost-efficient long-read population sequencing. Genome Research, 31 (5). pp. 910-918. ISSN 1088-9051

Ranallo-Benavidez, Rhyker, Lemmon, Zachary, Soyk, Sebastian, Aganezov, Sergey, Salerno, William, McCoy, Rajiv, Lippman, Zachary, Schatz, Michael, Sedlazeck, Fritz (August 2020) SVCollector: Optimized sample selection for cost-efficient long-read population sequencing. BioRxiv. (Unpublished)

Alonge, M., Wang, X., Benoit, M., Soyk, S., Pereira, L., Zhang, L., Suresh, H., Ramakrishnan, S., Maumus, F., Ciren, D., Levy, Y., Harel, T. H., Shalev-Schlosser, G., Amsellem, Z., Razifard, H., Caicedo, A. L., Tieman, D. M., Klee, H., Kirsche, M., Aganezov, S., Ranallo-Benavidez, T. R., Lemmon, Z. H., Kim, J., Robitaille, G., Kramer, M., Goodwin, S., McCombie, W. R., Hutton, S., Van Eck, J., Gillis, J., Eshed, Y., Sedlazeck, F. J., van der Knaap, E., Schatz, M. C., Lippman, Z. B. (July 2020) Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato. Cell, 182 (1). 145-161.e23. ISSN 0092-8674 (Print)0092-8674

Kwon, C. T., Heo, J., Lemmon, Z. H., Capua, Y., Hutton, S. F., Van Eck, J., Park, S. J., Lippman, Z. B. (December 2019) Rapid customization of Solanaceae fruit crops for urban agriculture. Nat Biotechnol, 38. pp. 182-188. ISSN 1087-0156

Soyk, S., Lemmon, Z. H., Sedlazeck, F. J., Jimenez-Gomez, J. M., Alonge, M., Hutton, S. F., Van Eck, J., Schatz, M. C., Lippman, Z. B. (July 2019) Author Correction: Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato. Nat Plants. ISSN 2055-0278

Soyk, S., Lemmon, Z. H., Sedlazeck, F. J., Jimenez-Gomez, J. M., Alonge, M., Hutton, S. F., Van Eck, J., Schatz, M. C., Lippman, Z. B. (May 2019) Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato. Nat Plants, 5 (5). pp. 471-497. ISSN 2055-0278

Rodriguez-Leal, D., Xu, C., Kwon, C. T., Soyars, C., Demesa-Arevalo, E., Man, J., Liu, L., Lemmon, Z. H., Jones, D. S., Van Eck, J., Jackson, D. P., Bartlett, M. E., Nimchuk, Z. L., Lippman, Z. B. (April 2019) Evolution of buffering in a genetic circuit controlling plant stem cell proliferation. Nat Genet, 51 (5). pp. 786-792. ISSN 1061-4036

Lemmon, Z. H., Reem, N. T., Dalrymple, J., Soyk, S., Swartwood, K. E., Rodriguez-Leal, D., Van Eck, J., Lippman, Z. B. (October 2018) Rapid improvement of domestication traits in an orphan crop by genome editing. Nature Plants, 4 (10). pp. 766-770. ISSN 20550278 (ISSN)

Wang, X., Chen, Q., Wu, Y., Lemmon, Z. H., Xu, G., Huang, C., Liang, Y., Xu, D., Li, D., Doebley, J. F., Tian, F. (March 2018) Genome-wide analysis of transcriptional variability in a large maize-teosinte population. Mol Plant, 11 (3). pp. 443-459. ISSN 1674-2052

Rodríguez-Leal, Daniel, Lemmon, Zachary H., Man, Jarrett, Bartlett, Madelaine E., Lippman, Zachary B. (October 2017) Engineering Quantitative Trait Variation for Crop Improvement by Genome Editing. Cell, 171 (2). pp. 470-80. ISSN 0092-8674

Soyk, Sebastian, Lemmon, Zachary H., Oved, Matan, Fisher, Josef, Liberatore, Katie L., Park, Soon Ju, Goren, Anna, Jiang, Ke, Ramos, Alexis, van der Knaap, Esther, Van Eck, Joyce, Zamir, Dani, Eshed, Yuval, Lippman, Zachary B. (June 2017) Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene. Cell, 169 (6). pp. 1142-1155. ISSN 0092-8674

Van Eck, J., Swartwood, K., Lemmon, Z. H., Dalrymple, J., Lippman, Z. B. (June 2017) Development of Agrobacterium-mediated Transformation of Physalis peruviana and Application of CRISPR/Cas9 Genome Editing. In Vitro Cellular & Developmental Biology-Animal, 53 (Supple). S34-S35. ISSN 1071-2690

Lemmon, Z. H., Park, S. J., Jiang, K., Van Eck, J., Schatz, M. C., Lippman, Z. B. (November 2016) The evolution of inflorescence diversity in the nightshades and heterochrony during meristem maturation. Genome Res, 26 (12). pp. 1676-1686. ISSN 1549-5469 (Electronic)1088-9051 (Linking) (Public Dataset)

Lemmon, Z. H., Doebley, J. F. (September 2014) Genetic Dissection of a Genomic Region with Pleiotropic Effects on Domestication Traits in Maize Reveals Multiple Linked QTL. Genetics, 198 (1). pp. 345-53. ISSN 0016-6731