Browse by CSHL Author

Paper

Huang, Longwen, Kebschull, Justus M, Fürth, Daniel, Musall, Simon, Kaufman, Matthew T, Churchland, Anne K, Zador, Anthony M (July 2020) BRICseq Bridges Brain-wide Interregional Connectivity to Neural Activity and Gene Expression in Single Animals. Cell, 182 (1). 177-188.e27. ISSN 0092-8674

Musall, S., Kaufman, M. T., Juavinett, A. L., Gluf, S., Churchland, A. K. (October 2019) Single-trial neural dynamics are dominated by richly varied movements. Nat Neurosci, 22 (10). pp. 1677-1686. ISSN 1097-6256

Huang, Longwen, Kebschull, Justus, Furth, Daniel, Musall, Simon, Kaufman, Matthew T., Churchland, Anne K., Zador, Anthony (September 2018) High-throughput mapping of mesoscale connectomes in individual mice. bioRxiv.

Pandarinath, C., O'Shea, D. J., Collins, J., Jozefowicz, R., Stavisky, S. D., Kao, J. C., Trautmann, E. M., Kaufman, M. T., Ryu, S. I., Hochberg, L. R., Henderson, J. M., Shenoy, K. V., Abbott, L. F., Sussillo, D. (September 2018) Inferring single-trial neural population dynamics using sequential auto-encoders. Nat Methods, 15 (10). pp. 805-815. ISSN 1548-7091

O'Shea, D. J., Kalanithi, P., Ferenczi, E. A., Hsueh, B., Chandrasekaran, C., Goo, W., Diester, I., Ramakrishnan, C., Kaufman, M. T., Ryu, S. I., Yeom, K. W., Deisseroth, K., Shenoy, K. V. (April 2018) Development of an optogenetic toolkit for neural circuit dissection in squirrel monkeys. Sci Rep, 8 (1). p. 6775. ISSN 2045-2322

Giovannucci, A., Friedrich, J., Kaufman, M., Churchland, A. K., Chklovskii, D., Paninski, L., Pnevmatikakis, E. A. (December 2017) OnACID: Online analysis of calcium imaging data in real time. 31st Annual Conference on Neural Information Processing Systems, NIPS 2017;, 2017-D. pp. 2382-2392. ISSN 10495258

Omrani, M., Kaufman, M. T., Hatsopoulos, N. G., Cheney, P. D. (September 2017) Perspectives on classical controversies about the motor cortex. J Neurophysiol, 118 (3). pp. 1828-1848. ISSN 0022-3077

Licata, A. M., Kaufman, M. T., Raposo, D., Ryan, M. B., Sheppard, J. P., Churchland, A. K. (May 2017) Posterior parietal cortex guides visual decisions in rats. J Neurosci, 37 (19). pp. 4954-4966. ISSN 0270-6474

Kaufman, M. T., Churchland, A. K. (November 2016) Many paths from state to state. Nat Neurosci, 19 (12). pp. 1541-1542. ISSN 1546-1726 (Electronic)1097-6256 (Linking)

Seely, J. S., Kaufman, M. T., Ryu, S. I., Shenoy, K. V., Cunningham, J. P., Churchland, M. M. (November 2016) Tensor Analysis Reveals Distinct Population Structure that Parallels the Different Computational Roles of Areas M1 and V1. PLoS Comput Biol, 12 (11). e1005164. ISSN 1553-7358 (Electronic)1553-734X (Linking)

Elsayed, G. F., Lara, A. H., Kaufman, M. T., Churchland, M. M., Cunningham, J. P. (October 2016) Reorganization between preparatory and movement population responses in motor cortex. Nat Commun, 7. p. 13239. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Kaufman, M. T., Seely, J. S., Sussillo, D., Ryu, S. I., Shenoy, K. V., Churchland, M. M. (August 2016) The Largest Response Component in the Motor Cortex Reflects Movement Timing but Not Movement Type. eNeuro, 3 (4). ISSN 2373-2822 (Electronic)2373-2822 (Linking)

Sussillo, David, Churchland, Mark M., Kaufman, Matthew T., Shenoy, Krishna V. (June 2015) A neural network that finds a naturalistic solution for the production of muscle activity. Nat Neurosci, 18 (7). pp. 1025-1033. ISSN 1097-6256

Kaufman, M. T., Churchland, M. M., Ryu, S. I., Shenoy, K. V. (May 2015) Vacillation, indecision and hesitation in moment-by-moment decoding of monkey motor cortex. Elife, 4. e04677. ISSN 2050-084X (Electronic)2050-084X (Linking)

Raposo, David, Kaufman, Matthew T., Churchland, Anne K. (December 2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience, 17 (12). pp. 1784-1792. ISSN 1546-1726

Kaufman, M. T., Churchland, M. M., Ryu, S. I., Shenoy, K. V. (February 2014) Cortical activity in the null space: permitting preparation without movement. Nature Neuroscience, 17 (3). pp. 440-448. ISSN 1097-6256

Cowley, B. R., Kaufman, M. T., Butler, Z. S., Churchland, M. M., Ryu, S. I., Shenoy, K. V., Yu, B. M. (December 2013) DataHigh: Graphical user interface for visualizing and interacting with high-dimensional neural activity. Journal of Neural Engineering, 10 (6). ISSN 17412560 (ISSN)

Kaufman, M. T., Churchland, M. M., Shenoy, K. V. (May 2013) The roles of monkey M1 neuron classes in movement preparation and execution. Journal of Neurophysiology, 110 (4). pp. 817-825. ISSN 00223077

Kaufman, M. T., Churchland, A. K. (2013) Cognitive neuroscience: Sensory noise drives bad decisions. Nature, 496 (7444). pp. 172-173. ISSN 00280836 (ISSN)

Dataset

Churchland, A. K., Musall, Simon, Kaufman, Matthew T., Juavinett, A. L., Gluf, S. (October 2019) Dataset from: Single-trial neural dynamics are dominated by richly varied movements. [Dataset]

Raposo, D., Kaufman, M. T., Churchland, A. K. (2014) Datasets from "Raposo, David and Kaufman, Matthew T. and Churchland, Anne K. (2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience". [Dataset]

Raposo, D., Kaufman, M. T., Churchland, A. K. (2014) Matlab code for running the PAIRS and Variance Alignment Analyses from "Raposo, David and Kaufman, Matthew T. and Churchland, Anne K. (2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience". [Dataset]