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Lu, Shaina, Fürth, Daniel, Gillis, Jesse (October 2021) Integrative analysis methods for spatial transcriptomics. Nature Methods. ISSN 1548-7091

Lu, Shaina, Ortiz, Cantin, Fürth, Daniel, Fischer, Stephan, Meletis, Konstantinos, Zador, Anthony, Gillis, Jesse (July 2021) Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain. PLoS Biology, 19 (7). e3001341. ISSN 1545-7885

Liu, Songlei, Punthambaker, Sukanya, Iyer, Eswar PR, Ferrante, Thomas, Goodwin, Daniel, Fürth, Daniel, Pawlowski, Andrew C, Jindal, Kunal, Tam, Jenny M, Mifflin, Lauren, Alon, Shahar, Sinha, Anubhav, Wassie, Asmamaw T, Chen, Fei, Cheng, Anne, Willocq, Valerie, Meyer, Katharina, Ling, King-Hwa, Camplisson, Conor K, Kohman, Richie E, Aach, John, Lee, Je Hyuk, Yankner, Bruce A, Boyden, Edward S, Church, George M (March 2021) Barcoded oligonucleotides ligated on RNA amplified for multiplexed and parallel in situ analyses. Nucleic Acids Research. ISSN 0305-1048

Anderson, Kristin R, Harris, Julie A, Ng, Lydia, Prins, Pjotr, Memar, Sara, Ljungquist, Bengt, Fürth, Daniel, Williams, Robert W, Ascoli, Giorgio A, Dumitriu, Dani (February 2021) Highlights from the Era of Open Source Web-Based Tools. The Journal of Neuroscience, 41 (5). pp. 927-936. ISSN 0270-6474

Choi, Jung Yoon, Jang, Hee Jae, Ornelas, Sharon, Fleming, Weston T, Fürth, Daniel, Au, Jennifer, Bandi, Akhil, Engel, Esteban A, Witten, Ilana B (December 2020) A Comparison of Dopaminergic and Cholinergic Populations Reveals Unique Contributions of VTA Dopamine Neurons to Short-Term Memory. Cell Reports, 33 (11). p. 108492. ISSN 2211-1247

Lu, Shaina, Ortiz, Cantin, Fürth, Daniel, Fischer, Stephan, Meletis, Konstantinos, Zador, Anthony, Gillis, Jesse (October 2020) Replicability of spatial gene expression atlas data from the adult mouse brain. bioRxiv. (Unpublished)

Asp, M., Giacomello, S., Larsson, L., Wu, C., Furth, D., Qian, X., Wardell, E., Custodio, J., Reimegard, J., Salmen, F., Osterholm, C., Stahl, P. L., Sundstrom, E., Akesson, E., Bergmann, O., Bienko, M., Mansson-Broberg, A., Nilsson, M., Sylven, C., Lundeberg, J. (December 2019) A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart. Cell, 179 (7). 1647-1660.e19. ISSN 0092-8674

Fürth, Daniel, Hatini, Victor, Lee, Je (August 2019) In Situ Transcriptome Accessibility Sequencing (INSTA-seq). BioRxiv. (Unpublished)

Huang, Longwen, Kebschull, Justus, Furth, Daniel, Musall, Simon, Kaufman, Matthew T., Churchland, Anne K., Zador, Anthony (September 2018) High-throughput mapping of mesoscale connectomes in individual mice. bioRxiv.