Browse by CSHL Author

Paper

Musall, Simon, Sun, Xiaonan R, Mohan, Hemanth, An, Xu, Gluf, Steven, Li, Shu-Jing, Drewes, Rhonda, Cravo, Emma, Lenzi, Irene, Yin, Chaoqun, Kampa, Björn M, Churchland, Anne K (January 2023) Pyramidal cell types drive functionally distinct cortical activity patterns during decision-making. Nature Neuroscience. ISSN 1097-6256

International Brain Laboratory, Aguillon, Valeria, Angelaki, Dora E, Bayer, Hannah, Bonacchi, Niccolo, Carandini, Matteo, Cazettes, Fanny, Chapuis, Gaelle, Churchland, Anne K, Dan, Yang, Dewitt, Eric, Faulkner, Mayo, Forrest, Hamish, Haetzel, Laura, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Khanal, Anup, Krasniak, Christopher, Laranjeira, Ines, Mainen, Zachary F, Meijer, Guido, Miska, Nathaniel, Mrsic-Flogel, Thomas D, Murakami, Masayoshi, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Rossant, Cyrille, Sanders, Joshua, Socha, Karolina, Terry, Rebecca, Urai, Anne E, Vergara, Hernando, Wells, Miles, Wilson, Christian, Witten, Ilana B, Wool, Lauren, Zador, Anthony M (October 2022) Correction: Standardized and reproducible measurement of decision-making in mice. eLife, 11. e84310. ISSN 2050-084X

Urai, Anne E, Doiron, Brent, Leifer, Andrew M, Churchland, Anne K (January 2022) Large-scale neural recordings call for new insights to link brain and behavior. Nature Neuroscience. ISSN 1097-6256

Roach, James, Churchland, Anne, Engel, Tatiana (2022) Two roles for choice selective inhibition in decision-making circuits. bioRxiv. (Submitted)

Macpherson, Tom, Churchland, Anne, Sejnowski, Terry, DiCarlo, James, Kamitani, Yukiyasu, Takahashi, Hidehiko, Hikida, Takatoshi (September 2021) Natural and Artificial Intelligence: A brief introduction to the interplay between AI and neuroscience research. Neural Networks. ISSN 0893-6080

Couto, Joao, Musall, Simon, Sun, Xiaonan R, Khanal, Anup, Gluf, Steven, Saxena, Shreya, Kinsella, Ian, Abe, Taiga, Cunningham, John P, Paninski, Liam, Churchland, Anne K (June 2021) Chronic, cortex-wide imaging of specific cell populations during behavior. Nature Protocols. ISSN 1754-2189

International Brain Laboratory, Aguillon-Rodriguez, Valeria, Angelaki, Dora, Bayer, Hannah, Bonacchi, Niccolo, Carandini, Matteo, Cazettes, Fanny, Chapuis, Gaelle, Churchland, Anne K, Dan, Yang, Dewitt, Eric, Faulkner, Mayo, Forrest, Hamish, Haetzel, Laura, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Khanal, Anup, Krasniak, Christopher, Laranjeira, Ines, Mainen, Zachary F, Meijer, Guido, Miska, Nathaniel J, Mrsic-Flogel, Thomas D, Murakami, Masayoshi, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Rossant, Cyrille, Sanders, Joshua, Socha, Karolina, Terry, Rebecca, Urai, Anne E, Vergara, Hernando, Wells, Miles, Wilson, Christian J, Witten, Ilana B, Wool, Lauren E, Zador, Anthony M (May 2021) Standardized and reproducible measurement of decision-making in mice. eLife, 10. ISSN 2050-084X

Pisupati, Sashank, Chartarifsky-Lynn, Lital, Khanal, Anup, Churchland, Anne K (January 2021) Lapses in perceptual decisions reflect exploration. eLife, 10. pp. 1-27. ISSN 2050-084X

Urai, Anne E, Aguillon-Rodriguez, Valeria, Laranjeira, Inês C, Cazettes, Fanny, International Brain Laboratory, Mainen, Zachary F, Churchland, Anne K (January 2021) Citric Acid Water as an Alternative to Water Restriction for High-Yield Mouse Behavior. eNeuro, 8 (1). pp. 1-8. ISSN 2373-2822

Huang, Longwen, Kebschull, Justus M, Fürth, Daniel, Musall, Simon, Kaufman, Matthew T, Churchland, Anne K, Zador, Anthony M (July 2020) BRICseq Bridges Brain-wide Interregional Connectivity to Neural Activity and Gene Expression in Single Animals. Cell, 182 (1). 177-188.e27. ISSN 0092-8674

Saxena, S., Kinsella, I., Musall, S., Kim, S.H., Meszaros, J., Thibodeaux, D.N., Kim, C., Cunningham, J., Hillman, E.M.C., Churchland, A., Paninski, L. (April 2020) Localized Semi-Nonnegative Matrix Factorization (LocaNMF) of Widefield Calcium Imaging Data. PLoS Comput Biol, 16 (4). e1007791. ISSN 1553-734x

The International Brain Laboratory, Aguillon-Rodriguez, Valeria, Angelaki, Dora, Bayer, Hannah, Bonacchi, Niccolò, Carandini, Matteo, Cazettes, Fanny, Chapuis, Gaelle, Churchland, Anne, Dan, Yang, Dewitt, Eric, Faulkner, Mayo, Forrest, Hamish, Haetzel, Laura, Hausser, Michael, Hofer, Sonja, Hu, Fei, Khanal, Anup, Krasniak, Christopher, Laranjeira, Inês, Mainen, Zachary, Meijer, Guido, Miska, Nathaniel, Mrsic-Flogel, Thomas, Murakami, Masayoshi, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Sanders, Josh, Socha, Karolina, Terry, Rebecca, Urai, Anne, Vergara, Hernando, Wells, Miles, Wilson, Christian, Witten, Ilana, Wool, Lauren, Zador, Anthony (January 2020) A standardized and reproducible method to measure decision-making in mice. bioRxiv. (Unpublished)

Najafi, F., Elsayed, G. F., Cao, R., Pnevmatikakis, E., Latham, P. E., Cunningham, J. P., Churchland, A. K. (October 2019) Excitatory and Inhibitory Subnetworks Are Equally Selective during Decision-Making and Emerge Simultaneously during Learning. Neuron, 105 (1). pp. 165-179. ISSN 0896-6273 (Public Dataset)

Musall, S., Urai, A. E., Sussillo, D., Churchland, A. K. (October 2019) Harnessing behavioral diversity to understand neural computations for cognition. Curr Opin Neurobiol, 58. pp. 229-238. ISSN 0959-4388

Musall, S., Kaufman, M. T., Juavinett, A. L., Gluf, S., Churchland, A. K. (October 2019) Single-trial neural dynamics are dominated by richly varied movements. Nat Neurosci, 22 (10). pp. 1677-1686. ISSN 1097-6256

Juavinett, A. L., Bekheet, G., Churchland, A. K. (August 2019) Chronically-implanted Neuropixels probes enable high yield recordings in freely moving mice. Elife, 8. ISSN 2050-084x (Public Dataset)

Najafi, F., Churchland, A. K. (October 2018) Perceptual Decision-Making: A Field in the Midst of a Transformation. Neuron, 100 (2). pp. 453-462. ISSN 0896-6273

Odoemene, O., Pisupati, S., Nguyen, H., Churchland, A. K. (October 2018) Visual evidence accumulation guides decision-making in unrestrained mice. J Neurosci, 38 (47). pp. 10143-10155. ISSN 0270-6474 (Public Dataset)

Huang, Longwen, Kebschull, Justus, Furth, Daniel, Musall, Simon, Kaufman, Matthew T., Churchland, Anne K., Zador, Anthony (September 2018) High-throughput mapping of mesoscale connectomes in individual mice. bioRxiv.

Giovannucci, A., Friedrich, J., Kaufman, M., Churchland, A. K., Chklovskii, D., Paninski, L., Pnevmatikakis, E. A. (December 2017) OnACID: Online analysis of calcium imaging data in real time. 31st Annual Conference on Neural Information Processing Systems, NIPS 2017;, 2017-D. pp. 2382-2392. ISSN 10495258

Juavinett, A. L., Erlich, J. C., Churchland, A. K. (November 2017) Decision-making behaviors: weighing ethology, complexity, and sensorimotor compatibility. Curr Opin Neurobiol, 49. pp. 42-50. ISSN 0959-4388

Licata, A. M., Kaufman, M. T., Raposo, D., Ryan, M. B., Sheppard, J. P., Churchland, A. K. (May 2017) Posterior parietal cortex guides visual decisions in rats. J Neurosci, 37 (19). pp. 4954-4966. ISSN 0270-6474

Churchland, A. (December 2016) Q&A with Anne Churchland. Neuron, 92 (5). pp. 940-942. ISSN 0896-6273

Kaufman, M. T., Churchland, A. K. (November 2016) Many paths from state to state. Nat Neurosci, 19 (12). pp. 1541-1542. ISSN 1546-1726 (Electronic)1097-6256 (Linking)

Churchland, Anne K., Kiani, Roozbeh (October 2016) Three challenges for connecting model to mechanism in decision-making. Current Opinion in Behavioral Sciences, 11. pp. 74-80. ISSN 2352-1546

Pisupati, S., Chartarifsky, L., Churchland, A. K. (September 2016) Decision Activity in Parietal Cortex - Leader or Follower? Trends Cogn Sci. ISSN 1879-307X (Electronic)1364-6613 (Linking)

Churchland, A. K., Abbott, L. F. (February 2016) Conceptual and technical advances define a key moment for theoretical neuroscience. Nat Neurosci, 19 (3). pp. 348-9. ISSN 1546-1726 (Electronic)1097-6256 (Linking)

Churchland, Anne, Lisberger, Stephen (June 2015) Contributions from different model organisms to brain research. Neuroscience, 296. pp. 1-2. ISSN 0306-4522

Kanitscheider, I., Brown, A., Pouget, A., Churchland, A. K. (June 2015) Multisensory decisions provide support for probabilistic number representations. Journal of Neurophysiology, 113 (10). pp. 3490-3498. ISSN 00223077

Raposo, David, Kaufman, Matthew T., Churchland, Anne K. (December 2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience, 17 (12). pp. 1784-1792. ISSN 1546-1726

Odoemene, O., Churchland, A.K. (June 2014) Listening for the Right Sounds. Neuron, 82 (5). pp. 944-945. ISSN 0896-6273

Kiani, R., Churchland, A. K., Shadlen, M. N. (October 2013) Integration of Direction Cues Is Invariant to the Temporal Gap between Them. Journal of Neuroscience, 33 (42). pp. 16483-9. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Carandini, M., Churchland, A. K. (July 2013) Probing perceptual decisions in rodents. Nature Neuroscience, 16 (7). pp. 824-831. ISSN 1097-6256

Kaufman, M. T., Churchland, A. K. (2013) Cognitive neuroscience: Sensory noise drives bad decisions. Nature, 496 (7444). pp. 172-173. ISSN 00280836 (ISSN)

Sheppard, J. P., Raposo, D., Churchland, A. K. (2013) Dynamic weighting of multisensory stimuli shapes decision-making in rats and humans. Journal of Vision, 13 (6). ISSN 1534-7362 (Electronic)1534-7362 (Linking)

Drugowitsch, J., Moreno-Bote, R., Churchland, A. K., Shadlen, M. N., Pouget, A. (March 2012) The Cost of Accumulating Evidence in Perceptual Decision Making. Journal of Neuroscience, 32 (11). pp. 3612-3628. ISSN 0270-6474

Raposo, D., Sheppard, J. P., Schrater, P. R., Churchland, A. K. (March 2012) Multisensory decision-making in rats and humans. Journal of Neuroscience, 32 (11). pp. 3726-35. ISSN 0270-6474

Churchland, A. K., Ditterich, J. (2012) New advances in understanding decisions among multiple alternatives. Current Opinion in Neurobiology. ISSN 0959-4388

Churchland, A. K. (May 2011) Normalizing relations between the senses. Nature Neuroscience, 14 (6). pp. 672-3. ISSN 1097-6256

Churchland, A. K., Kiani, R., Chaudhuri, R., Wang, X. J., Pouget, A., Shadlen, M. N. (February 2011) Variance as a Signature of Neural Computations during Decision Making. Neuron, 69 (4). pp. 818-831.

Churchland, A. K., Kiani, R., Shadlen, M. N. (2008) Decision-making with multiple alternatives. Nature Neuroscience, 11 (6). pp. 693-702. ISSN 10976256 (ISSN)

Beck, J. M., Ma, W. J., Kiani, R., Hanks, T., Churchland, A. K., Roitman, J., Shadlen, M. N., Latham, P. E., Pouget, A. (2008) Probabilistic Population Codes for Bayesian Decision Making. Neuron, 60 (6). pp. 1142-1152. ISSN 08966273 (ISSN)

Churchland, A. K., Huang, X., Lisberger, S. G. (January 2007) Responses of neurons in the medial superior temporal visual area to apparent motion stimuli in macaque monkeys. Journal of Neurophysiology, 97 (1). pp. 272-282. ISSN 00223077 (ISSN)

Churchland, A. K., Lisberger, S. G. (October 2005) Relationship between extraretinal component of firing rate and eye speed in area MST of Macaque monkeys. Journal of Neurophysiology, 94 (4). pp. 2416-2426. ISSN 00223077 (ISSN)

Churchland, A. K., Lisberger, S. G. (2005) Discharge properties of MST neurons that project to the frontal pursuit area in macaque monkeys. Journal of Neurophysiology, 94 (2). pp. 1084-1090. ISSN 00223077 (ISSN)

Churchland, A. K., Gardner, J. L., Chou, I. H., Priebe, N. J., Lisberger, S. G. (March 2003) Directional anisotropies reveal a functional segregation of visual motion processing for perception and action. Neuron, 37 (6). pp. 1001-1011. ISSN 08966273 (ISSN)

Blake, D. T., Strata, F., Churchland, A. K., Merzenich, M. M. (July 2002) Neural correlates of instrumental learning in primary auditory cortex. Proceedings of the National Academy of Sciences of the United States of America, 99 (15). pp. 10114-10119. ISSN 00278424 (ISSN)

Churchland, A. K., Lisberger, S. G. (2002) Gain control in human smooth-pursuit eye movements. Journal of Neurophysiology, 87 (6). pp. 2936-2945. ISSN 00223077 (ISSN)

Rambold, H., Churchland, A. K., Selig, Y., Jasmin, L., Lisberger, S. G. (2002) Partial ablations of the flocculus and ventral paraflocculus in monkeys cause linked deficits in smooth pursuit eye movements and adaptive modification of the VOR. Journal of Neurophysiology, 87 (2). pp. 912-924. ISSN 00223077 (ISSN)

Diamond, A., Churchland, A. K., Cruess, L., Kirkham, N. Z. (November 1999) Early developments in the ability to understand the relation between stimulus and reward. Developmental Psychology, 35 (6). pp. 1507-1517. ISSN 00121649 (ISSN)

Book Section

Churchland, A. K., Shadlen, M. N. (2007) Decision-Making and Vision. In: The New Encyclopedia of Neuroscience. Elsevier.

Shadlen, M. N., Hanks, T. D., Churchland, A. K., Kiani, R., Yang, T. J. (2007) The Speed and Accuracy of a Simple Perceptual Decision: A Mathematical Primer. In: Bayesian Brain: Probabilistic Approaches to Neural Coding (Computational Neuroscience). M. I. T. Press, Cambridge, MA, pp. 209-238. ISBN ISBN-10: 0-262-51601-2

Conference or Workshop Item

Varol, E, Boussard, J, Dethe, N, Winter, O, Urai, A, Churchland, A, Steinmetz, N, Paninski, L (January 2021) Decentralized motion inference and registration of neuropixel data. In: Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing, 6 Jun 2021 - 11 Jun 2021.

Sheppard, J. P., Ryan, M.B., Churchland, A. K. (November 2013) Optogenetic stimulation of visual inputs to posterior parietal cortex biases choice behavior of rats on a multisensory decision task. In: Neuroscience 2013, Nov 9th-13th 2013, San Diego, CA.

Churchland, A. K. (May 2013) Noise in decision making. In: European Science Foundation Exploratory Workshop , May 29th 2013, Sant Fruitós del Bages, Spain. (Unpublished)

Image

Churchland, A. K., Bekheet, G., Cascone, B., Chartarifsky, L., Juavinett, A. L., Musall, S., Najafi, F., Pisupati, S., Urai, A. (May 2018) The Churchland birthday data cake. [Image]

Video

Churchland, A. K. (November 2011) Talk from Anne Churchland at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Dataset

Pisupati, S., Chartarifsky, L., Khanal, A., Churchland, A. K. (February 2020) Dataset from: Lapses in perceptual decisions reflect exploration. [Dataset]

Odoemene, O., Pisupati, S., Nguyen, H., Churchland, A. K. (January 2020) Dataset from: Visual evidence accumulation guides decision-making in unrestrained mice. [Dataset]

Churchland, A. K., Musall, Simon, Kaufman, Matthew T., Juavinett, A. L., Gluf, S. (October 2019) Dataset from: Single-trial neural dynamics are dominated by richly varied movements. [Dataset]

Juavinett, A. L., Bekheet, G., Churchland, A. K. (August 2019) Chronically-implanted Neuropixels probes enable high yield recordings in freely moving mice: dataset. [Dataset]

Najafi, Farzaneh, Elsayed, Gamaleldin F, Cao, Robin, Pnevmatikakis, Eftychios, Latham, Peter E, Cunningham, John P, Churchland, Anne K (February 2019) Dataset from "Farzaneh Najafi, Gamaleldin F Elsayed, Robin Cao, Eftychios Pnevmatikakis, Peter E. Latham, John P Cunningham, Anne K Churchland (bioRxiv, 2018); Excitatory and inhibitory subnetworks are equally selective during decision-making and emerge simultaneously during learning.”. [Dataset] (Unpublished)

Juavinett, A. L., Bekheet, G., Churchland, A. K. (2018) 3D design files for chronically-implanted Neuropixels probes from "Juavinett, Ashley and Bekheet, George and Churchland, Anne K. (2018) bioRxiv". [Dataset] (Unpublished)

Najafi, F., Elsayed, G. F., Pnevmatikakis, E., Cunningham, J. P., Churchland, A. K. (2018) Datasets from "Najafi, Farzaneh and Elsayed, Gamaleldin F and Pnevmatikakis, Eftychios and Cunningham, John P and Churchland, Anne K (2018) Inhibitory and excitatory populations in parietal cortex are equally selective for decision outcome in both novices and experts. [Dataset] (In Press)

Raposo, D., Kaufman, M. T., Churchland, A. K. (2014) Datasets from "Raposo, David and Kaufman, Matthew T. and Churchland, Anne K. (2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience". [Dataset]

Raposo, D., Kaufman, M. T., Churchland, A. K. (2014) Matlab code for running the PAIRS and Variance Alignment Analyses from "Raposo, David and Kaufman, Matthew T. and Churchland, Anne K. (2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience". [Dataset]

Sheppard, J. P., Raposo, D., Churchland, A. K. (August 2013) Tutorial and data for "Sheppard, J. P. and Raposo, D. and Churchland, A. K. (2013) Dynamic weighting of multisensory stimuli shapes decision-making in rats and humans. Journal of Vision, 13 (6).". [Dataset]

Other

Churchland, A. K. (December 2014) Curriculum Vitae for Anne Churchland. UNSPECIFIED. (Unpublished)