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Das, D., Banerjee, N., Zhang, M. Q. (November 2004) Interacting models of cooperative gene regulation. Proc Natl Acad Sci U S A, 101 (46). pp. 16234-9. ISSN 0027-8424 (Print)

Kato, M., Hata, N., Banerjee, N., Futcher, B., Zhang, M. Q. (2004) Identifying combinatorial regulation of transcription factors and binding motifs. Genome Biology, 5 (8). ISSN 1465-6914

Banerjee, N., Zhang, M. Q. (December 2003) Identifying cooperativity among transcription factors controlling the cell cycle in yeast. Nucleic Acids Research, 31 (23). pp. 7024-7031. ISSN 0305-1048

Banerjee, N., Zhang, M. Q. (June 2002) Functional genomics as applied to mapping transcription regulatory networks. Current Opinion in Microbiology, 5 (3). pp. 313-317. ISSN 1369-5274

Chen, G. X., Jaradat, S. A., Banerjee, N., Tanaka, T. S., Ko, M. S. H., Zhang, M. Q. (January 2002) Evaluation and comparison of clustering algorithms in analyzing es cell gene expression data. Statistica Sinica, 12 (1). pp. 241-262. ISSN 1017-0405